Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5406.1 and Xcc-8004.5407.1 are separated by 91 nucleotides Xcc-8004.5407.1 and Xcc-8004.5408.1 are separated by 22 nucleotides
Xcc-8004.5406.1: Xcc-8004.5406.1 - hypothetical protein, at 5,138,851 to 5,141,895
Xcc-8004.5406.1
Xcc-8004.5407.1: Xcc-8004.5407.1 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 5,141,987 to 5,143,327
Xcc-8004.5407.1
Xcc-8004.5408.1: Xcc-8004.5408.1 - Polysaccharide deacetylase, caspase activity, at 5,143,350 to 5,146,109
Xcc-8004.5408.1
Position (kb) 5141
5142
5143
5144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5141.125 kb on + strand, within Xcc-8004.5406.1 at 5141.125 kb on + strand, within Xcc-8004.5406.1 at 5141.126 kb on - strand, within Xcc-8004.5406.1 at 5141.212 kb on + strand, within Xcc-8004.5406.1 at 5141.213 kb on - strand, within Xcc-8004.5406.1 at 5141.223 kb on - strand, within Xcc-8004.5406.1 at 5141.302 kb on + strand, within Xcc-8004.5406.1 at 5141.302 kb on + strand, within Xcc-8004.5406.1 at 5141.302 kb on + strand, within Xcc-8004.5406.1 at 5141.302 kb on + strand, within Xcc-8004.5406.1 at 5141.303 kb on - strand, within Xcc-8004.5406.1 at 5141.303 kb on - strand, within Xcc-8004.5406.1 at 5141.304 kb on + strand, within Xcc-8004.5406.1 at 5141.304 kb on + strand, within Xcc-8004.5406.1 at 5141.304 kb on + strand, within Xcc-8004.5406.1 at 5141.304 kb on + strand, within Xcc-8004.5406.1 at 5141.305 kb on - strand, within Xcc-8004.5406.1 at 5141.305 kb on - strand, within Xcc-8004.5406.1 at 5141.305 kb on - strand, within Xcc-8004.5406.1 at 5141.305 kb on - strand, within Xcc-8004.5406.1 at 5141.339 kb on - strand, within Xcc-8004.5406.1 at 5141.416 kb on + strand, within Xcc-8004.5406.1 at 5141.417 kb on - strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.467 kb on + strand, within Xcc-8004.5406.1 at 5141.468 kb on - strand, within Xcc-8004.5406.1 at 5141.468 kb on - strand, within Xcc-8004.5406.1 at 5141.468 kb on - strand, within Xcc-8004.5406.1 at 5141.542 kb on + strand, within Xcc-8004.5406.1 at 5141.542 kb on + strand, within Xcc-8004.5406.1 at 5141.542 kb on + strand, within Xcc-8004.5406.1 at 5141.542 kb on + strand, within Xcc-8004.5406.1 at 5141.543 kb on - strand, within Xcc-8004.5406.1 at 5141.544 kb on + strand, within Xcc-8004.5406.1 at 5141.544 kb on + strand, within Xcc-8004.5406.1 at 5141.545 kb on - strand, within Xcc-8004.5406.1 at 5141.594 kb on - strand at 5141.705 kb on - strand at 5141.705 kb on - strand at 5141.785 kb on + strand at 5141.785 kb on + strand at 5141.785 kb on + strand at 5141.989 kb on - strand at 5141.989 kb on - strand at 5141.989 kb on - strand at 5141.989 kb on - strand at 5142.026 kb on + strand at 5142.026 kb on + strand at 5142.026 kb on + strand at 5142.212 kb on + strand, within Xcc-8004.5407.1 at 5142.212 kb on + strand, within Xcc-8004.5407.1 at 5142.212 kb on + strand, within Xcc-8004.5407.1 at 5142.213 kb on - strand, within Xcc-8004.5407.1 at 5142.213 kb on - strand, within Xcc-8004.5407.1 at 5142.668 kb on + strand, within Xcc-8004.5407.1 at 5143.182 kb on + strand, within Xcc-8004.5407.1 at 5143.235 kb on + strand at 5143.236 kb on - strand at 5143.414 kb on + strand at 5143.414 kb on + strand at 5143.414 kb on + strand at 5143.415 kb on - strand at 5143.415 kb on - strand at 5143.415 kb on - strand at 5143.423 kb on + strand at 5143.423 kb on + strand at 5143.423 kb on + strand at 5143.424 kb on - strand at 5143.424 kb on - strand at 5143.463 kb on - strand at 5143.463 kb on - strand at 5143.463 kb on - strand at 5143.546 kb on + strand at 5143.547 kb on - strand at 5143.564 kb on + strand at 5143.564 kb on + strand at 5143.564 kb on + strand at 5143.564 kb on + strand at 5143.565 kb on - strand at 5143.565 kb on - strand at 5143.581 kb on - strand at 5143.608 kb on + strand at 5143.609 kb on - strand at 5143.648 kb on + strand, within Xcc-8004.5408.1 at 5143.649 kb on - strand, within Xcc-8004.5408.1 at 5143.663 kb on + strand, within Xcc-8004.5408.1 at 5143.663 kb on + strand, within Xcc-8004.5408.1 at 5143.664 kb on - strand, within Xcc-8004.5408.1 at 5143.664 kb on - strand, within Xcc-8004.5408.1 at 5143.996 kb on + strand, within Xcc-8004.5408.1 at 5143.996 kb on + strand, within Xcc-8004.5408.1 at 5143.996 kb on + strand, within Xcc-8004.5408.1 at 5143.996 kb on + strand, within Xcc-8004.5408.1 at 5143.997 kb on - strand, within Xcc-8004.5408.1 at 5143.997 kb on - strand, within Xcc-8004.5408.1 at 5143.997 kb on - strand, within Xcc-8004.5408.1 at 5144.179 kb on + strand, within Xcc-8004.5408.1 at 5144.179 kb on + strand, within Xcc-8004.5408.1 at 5144.179 kb on + strand, within Xcc-8004.5408.1 at 5144.179 kb on + strand, within Xcc-8004.5408.1 at 5144.179 kb on + strand, within Xcc-8004.5408.1 at 5144.224 kb on + strand, within Xcc-8004.5408.1 at 5144.225 kb on - strand, within Xcc-8004.5408.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 5,141,125 + Xcc-8004.5406.1 0.75 +0.7 5,141,125 + Xcc-8004.5406.1 0.75 +0.1 5,141,126 - Xcc-8004.5406.1 0.75 -0.5 5,141,212 + Xcc-8004.5406.1 0.78 -0.2 5,141,213 - Xcc-8004.5406.1 0.78 -0.1 5,141,223 - Xcc-8004.5406.1 0.78 +0.7 5,141,302 + Xcc-8004.5406.1 0.80 +0.1 5,141,302 + Xcc-8004.5406.1 0.80 +2.3 5,141,302 + Xcc-8004.5406.1 0.80 -0.1 5,141,302 + Xcc-8004.5406.1 0.80 +0.1 5,141,303 - Xcc-8004.5406.1 0.81 +0.4 5,141,303 - Xcc-8004.5406.1 0.81 +0.6 5,141,304 + Xcc-8004.5406.1 0.81 -0.9 5,141,304 + Xcc-8004.5406.1 0.81 -1.0 5,141,304 + Xcc-8004.5406.1 0.81 +0.1 5,141,304 + Xcc-8004.5406.1 0.81 +0.3 5,141,305 - Xcc-8004.5406.1 0.81 -2.5 5,141,305 - Xcc-8004.5406.1 0.81 -0.3 5,141,305 - Xcc-8004.5406.1 0.81 -0.2 5,141,305 - Xcc-8004.5406.1 0.81 +0.7 5,141,339 - Xcc-8004.5406.1 0.82 -0.2 5,141,416 + Xcc-8004.5406.1 0.84 +1.5 5,141,417 - Xcc-8004.5406.1 0.84 +0.4 5,141,467 + Xcc-8004.5406.1 0.86 +0.6 5,141,467 + Xcc-8004.5406.1 0.86 -0.2 5,141,467 + Xcc-8004.5406.1 0.86 +0.5 5,141,467 + Xcc-8004.5406.1 0.86 +0.3 5,141,467 + Xcc-8004.5406.1 0.86 +1.9 5,141,467 + Xcc-8004.5406.1 0.86 +0.2 5,141,468 - Xcc-8004.5406.1 0.86 +1.7 5,141,468 - Xcc-8004.5406.1 0.86 +1.5 5,141,468 - Xcc-8004.5406.1 0.86 -0.4 5,141,542 + Xcc-8004.5406.1 0.88 -0.1 5,141,542 + Xcc-8004.5406.1 0.88 +0.5 5,141,542 + Xcc-8004.5406.1 0.88 +1.2 5,141,542 + Xcc-8004.5406.1 0.88 -0.2 5,141,543 - Xcc-8004.5406.1 0.88 +0.1 5,141,544 + Xcc-8004.5406.1 0.88 +0.7 5,141,544 + Xcc-8004.5406.1 0.88 -0.6 5,141,545 - Xcc-8004.5406.1 0.88 -0.5 5,141,594 - +1.0 5,141,705 - +0.6 5,141,705 - -0.4 5,141,785 + +0.9 5,141,785 + -1.4 5,141,785 + -0.4 5,141,989 - +0.1 5,141,989 - +0.0 5,141,989 - +0.6 5,141,989 - +0.8 5,142,026 + +0.3 5,142,026 + +0.4 5,142,026 + -0.5 5,142,212 + Xcc-8004.5407.1 0.17 +0.7 5,142,212 + Xcc-8004.5407.1 0.17 -0.1 5,142,212 + Xcc-8004.5407.1 0.17 +3.0 5,142,213 - Xcc-8004.5407.1 0.17 -0.6 5,142,213 - Xcc-8004.5407.1 0.17 -2.1 5,142,668 + Xcc-8004.5407.1 0.51 -3.4 5,143,182 + Xcc-8004.5407.1 0.89 -1.2 5,143,235 + -0.9 5,143,236 - -0.3 5,143,414 + -0.5 5,143,414 + +1.8 5,143,414 + +0.3 5,143,415 - -0.9 5,143,415 - +1.0 5,143,415 - -1.6 5,143,423 + -1.2 5,143,423 + -0.7 5,143,423 + +0.7 5,143,424 - -0.6 5,143,424 - -0.3 5,143,463 - -1.2 5,143,463 - -1.3 5,143,463 - +0.7 5,143,546 + +0.1 5,143,547 - -0.1 5,143,564 + -0.4 5,143,564 + -1.1 5,143,564 + +1.2 5,143,564 + +0.1 5,143,565 - +0.5 5,143,565 - -0.8 5,143,581 - -0.8 5,143,608 + -0.5 5,143,609 - +0.2 5,143,648 + Xcc-8004.5408.1 0.11 -0.5 5,143,649 - Xcc-8004.5408.1 0.11 +0.5 5,143,663 + Xcc-8004.5408.1 0.11 -0.4 5,143,663 + Xcc-8004.5408.1 0.11 -0.3 5,143,664 - Xcc-8004.5408.1 0.11 -0.7 5,143,664 - Xcc-8004.5408.1 0.11 +0.5 5,143,996 + Xcc-8004.5408.1 0.23 +0.7 5,143,996 + Xcc-8004.5408.1 0.23 +1.3 5,143,996 + Xcc-8004.5408.1 0.23 -2.5 5,143,996 + Xcc-8004.5408.1 0.23 +0.1 5,143,997 - Xcc-8004.5408.1 0.23 -0.1 5,143,997 - Xcc-8004.5408.1 0.23 +0.5 5,143,997 - Xcc-8004.5408.1 0.23 -0.5 5,144,179 + Xcc-8004.5408.1 0.30 +0.7 5,144,179 + Xcc-8004.5408.1 0.30 +0.2 5,144,179 + Xcc-8004.5408.1 0.30 +1.1 5,144,179 + Xcc-8004.5408.1 0.30 +0.1 5,144,179 + Xcc-8004.5408.1 0.30 -0.6 5,144,224 + Xcc-8004.5408.1 0.32 -0.5 5,144,225 - Xcc-8004.5408.1 0.32 -0.9
Or see this region's nucleotide sequence