Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5323.1 and Xcc-8004.5324.1 overlap by 152 nucleotides Xcc-8004.5324.1 and Xcc-8004.5326.1 overlap by 31 nucleotides Xcc-8004.5326.1 and Xcc-8004.5328.1 are separated by 122 nucleotides Xcc-8004.5328.1 and Xcc-8004.5327.1 are separated by 50 nucleotides
Xcc-8004.5323.1: Xcc-8004.5323.1 - putative; ORF located using Glimmer/Genemark, at 5,064,636 to 5,065,511
Xcc-8004.5323.1
Xcc-8004.5324.1: Xcc-8004.5324.1 - Mobile element protein, at 5,065,360 to 5,065,764
Xcc-8004.5324.1
Xcc-8004.5326.1: Xcc-8004.5326.1 - Mobile element protein, at 5,065,734 to 5,066,060
Xcc-8004.5326.1
Xcc-8004.5328.1: Xcc-8004.5328.1 - Mobile element protein, at 5,066,183 to 5,066,443
Xcc-8004.5328.1
Xcc-8004.5327.1: Xcc-8004.5327.1 - leucin rich protein, at 5,066,494 to 5,068,326
Xcc-8004.5327.1
Position (kb) 5065
5066
5067 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5064.822 kb on + strand, within Xcc-8004.5323.1 at 5064.823 kb on - strand, within Xcc-8004.5323.1 at 5064.823 kb on - strand, within Xcc-8004.5323.1 at 5064.846 kb on + strand, within Xcc-8004.5323.1 at 5064.846 kb on + strand, within Xcc-8004.5323.1 at 5064.847 kb on - strand, within Xcc-8004.5323.1 at 5064.894 kb on + strand, within Xcc-8004.5323.1 at 5064.895 kb on - strand, within Xcc-8004.5323.1 at 5064.903 kb on + strand, within Xcc-8004.5323.1 at 5064.991 kb on - strand, within Xcc-8004.5323.1 at 5064.991 kb on - strand, within Xcc-8004.5323.1 at 5064.991 kb on - strand, within Xcc-8004.5323.1 at 5065.032 kb on + strand, within Xcc-8004.5323.1 at 5065.032 kb on + strand, within Xcc-8004.5323.1 at 5065.074 kb on - strand, within Xcc-8004.5323.1 at 5065.074 kb on - strand, within Xcc-8004.5323.1 at 5065.111 kb on + strand, within Xcc-8004.5323.1 at 5065.119 kb on + strand, within Xcc-8004.5323.1 at 5065.120 kb on - strand, within Xcc-8004.5323.1 at 5065.120 kb on - strand, within Xcc-8004.5323.1 at 5065.120 kb on - strand, within Xcc-8004.5323.1 at 5065.120 kb on - strand, within Xcc-8004.5323.1 at 5065.122 kb on + strand, within Xcc-8004.5323.1 at 5065.122 kb on + strand, within Xcc-8004.5323.1 at 5065.122 kb on + strand, within Xcc-8004.5323.1 at 5065.122 kb on + strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.123 kb on - strand, within Xcc-8004.5323.1 at 5065.152 kb on + strand, within Xcc-8004.5323.1 at 5065.153 kb on - strand, within Xcc-8004.5323.1 at 5065.200 kb on + strand, within Xcc-8004.5323.1 at 5065.200 kb on + strand, within Xcc-8004.5323.1 at 5065.200 kb on + strand, within Xcc-8004.5323.1 at 5065.200 kb on + strand, within Xcc-8004.5323.1 at 5065.200 kb on + strand, within Xcc-8004.5323.1 at 5065.201 kb on - strand, within Xcc-8004.5323.1 at 5065.201 kb on - strand, within Xcc-8004.5323.1 at 5065.201 kb on - strand, within Xcc-8004.5323.1 at 5065.201 kb on - strand, within Xcc-8004.5323.1 at 5065.203 kb on + strand, within Xcc-8004.5323.1 at 5065.204 kb on - strand, within Xcc-8004.5323.1 at 5065.204 kb on - strand, within Xcc-8004.5323.1 at 5065.204 kb on - strand, within Xcc-8004.5323.1 at 5065.215 kb on + strand, within Xcc-8004.5323.1 at 5065.216 kb on - strand, within Xcc-8004.5323.1 at 5065.216 kb on - strand, within Xcc-8004.5323.1 at 5065.216 kb on - strand, within Xcc-8004.5323.1 at 5065.395 kb on + strand at 5065.395 kb on + strand at 5065.395 kb on + strand at 5065.395 kb on + strand at 5065.396 kb on - strand at 5065.396 kb on - strand at 5065.396 kb on - strand at 5065.585 kb on - strand, within Xcc-8004.5324.1 at 5065.593 kb on + strand, within Xcc-8004.5324.1 at 5065.593 kb on + strand, within Xcc-8004.5324.1 at 5065.593 kb on + strand, within Xcc-8004.5324.1 at 5065.594 kb on - strand, within Xcc-8004.5324.1 at 5065.797 kb on + strand, within Xcc-8004.5326.1 at 5066.033 kb on - strand at 5066.206 kb on + strand at 5066.207 kb on - strand at 5066.207 kb on - strand at 5066.332 kb on + strand, within Xcc-8004.5328.1 at 5066.332 kb on + strand, within Xcc-8004.5328.1 at 5066.369 kb on + strand, within Xcc-8004.5328.1 at 5066.369 kb on + strand, within Xcc-8004.5328.1 at 5066.370 kb on - strand, within Xcc-8004.5328.1 at 5066.370 kb on - strand, within Xcc-8004.5328.1 at 5066.419 kb on + strand at 5066.419 kb on + strand at 5066.420 kb on - strand at 5066.420 kb on - strand at 5066.420 kb on - strand at 5066.495 kb on + strand at 5066.495 kb on + strand at 5066.495 kb on + strand at 5066.496 kb on - strand at 5066.534 kb on + strand at 5066.534 kb on + strand at 5066.534 kb on + strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.535 kb on - strand at 5066.544 kb on + strand at 5066.621 kb on + strand at 5066.622 kb on - strand at 5066.622 kb on - strand at 5066.676 kb on + strand at 5066.688 kb on + strand, within Xcc-8004.5327.1 at 5066.688 kb on + strand, within Xcc-8004.5327.1 at 5066.688 kb on + strand, within Xcc-8004.5327.1 at 5066.689 kb on - strand, within Xcc-8004.5327.1 at 5066.689 kb on - strand, within Xcc-8004.5327.1 at 5066.754 kb on + strand, within Xcc-8004.5327.1 at 5066.755 kb on - strand, within Xcc-8004.5327.1 at 5066.755 kb on - strand, within Xcc-8004.5327.1 at 5066.755 kb on - strand, within Xcc-8004.5327.1 at 5066.879 kb on + strand, within Xcc-8004.5327.1 at 5066.879 kb on + strand, within Xcc-8004.5327.1 at 5066.879 kb on + strand, within Xcc-8004.5327.1 at 5066.879 kb on + strand, within Xcc-8004.5327.1 at 5066.880 kb on - strand, within Xcc-8004.5327.1 at 5066.880 kb on - strand, within Xcc-8004.5327.1 at 5066.880 kb on - strand, within Xcc-8004.5327.1 at 5066.937 kb on - strand, within Xcc-8004.5327.1 at 5066.943 kb on + strand, within Xcc-8004.5327.1 at 5066.944 kb on - strand, within Xcc-8004.5327.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 5,064,822 + Xcc-8004.5323.1 0.21 +0.2 5,064,823 - Xcc-8004.5323.1 0.21 +0.6 5,064,823 - Xcc-8004.5323.1 0.21 -0.4 5,064,846 + Xcc-8004.5323.1 0.24 -0.0 5,064,846 + Xcc-8004.5323.1 0.24 -1.1 5,064,847 - Xcc-8004.5323.1 0.24 -0.4 5,064,894 + Xcc-8004.5323.1 0.29 -0.6 5,064,895 - Xcc-8004.5323.1 0.30 -0.9 5,064,903 + Xcc-8004.5323.1 0.30 +0.6 5,064,991 - Xcc-8004.5323.1 0.41 +0.8 5,064,991 - Xcc-8004.5323.1 0.41 -0.2 5,064,991 - Xcc-8004.5323.1 0.41 -1.0 5,065,032 + Xcc-8004.5323.1 0.45 +0.1 5,065,032 + Xcc-8004.5323.1 0.45 -0.6 5,065,074 - Xcc-8004.5323.1 0.50 +0.3 5,065,074 - Xcc-8004.5323.1 0.50 -0.5 5,065,111 + Xcc-8004.5323.1 0.54 +1.2 5,065,119 + Xcc-8004.5323.1 0.55 +0.4 5,065,120 - Xcc-8004.5323.1 0.55 +0.1 5,065,120 - Xcc-8004.5323.1 0.55 -0.2 5,065,120 - Xcc-8004.5323.1 0.55 +0.7 5,065,120 - Xcc-8004.5323.1 0.55 -1.9 5,065,122 + Xcc-8004.5323.1 0.55 -1.5 5,065,122 + Xcc-8004.5323.1 0.55 -0.8 5,065,122 + Xcc-8004.5323.1 0.55 -0.3 5,065,122 + Xcc-8004.5323.1 0.55 -1.0 5,065,123 - Xcc-8004.5323.1 0.56 +0.3 5,065,123 - Xcc-8004.5323.1 0.56 -2.3 5,065,123 - Xcc-8004.5323.1 0.56 -1.0 5,065,123 - Xcc-8004.5323.1 0.56 -0.5 5,065,123 - Xcc-8004.5323.1 0.56 +0.0 5,065,123 - Xcc-8004.5323.1 0.56 +0.4 5,065,123 - Xcc-8004.5323.1 0.56 +0.7 5,065,152 + Xcc-8004.5323.1 0.59 -1.9 5,065,153 - Xcc-8004.5323.1 0.59 -0.1 5,065,200 + Xcc-8004.5323.1 0.64 -0.3 5,065,200 + Xcc-8004.5323.1 0.64 -0.3 5,065,200 + Xcc-8004.5323.1 0.64 +0.5 5,065,200 + Xcc-8004.5323.1 0.64 -0.6 5,065,200 + Xcc-8004.5323.1 0.64 -0.1 5,065,201 - Xcc-8004.5323.1 0.64 -1.6 5,065,201 - Xcc-8004.5323.1 0.64 +0.1 5,065,201 - Xcc-8004.5323.1 0.64 +1.4 5,065,201 - Xcc-8004.5323.1 0.64 -0.1 5,065,203 + Xcc-8004.5323.1 0.65 -0.7 5,065,204 - Xcc-8004.5323.1 0.65 +0.7 5,065,204 - Xcc-8004.5323.1 0.65 -0.7 5,065,204 - Xcc-8004.5323.1 0.65 -0.5 5,065,215 + Xcc-8004.5323.1 0.66 -1.3 5,065,216 - Xcc-8004.5323.1 0.66 -1.7 5,065,216 - Xcc-8004.5323.1 0.66 -1.6 5,065,216 - Xcc-8004.5323.1 0.66 +1.1 5,065,395 + +1.1 5,065,395 + -0.3 5,065,395 + -0.7 5,065,395 + -0.6 5,065,396 - +0.5 5,065,396 - +0.6 5,065,396 - +1.0 5,065,585 - Xcc-8004.5324.1 0.56 +0.6 5,065,593 + Xcc-8004.5324.1 0.58 +0.7 5,065,593 + Xcc-8004.5324.1 0.58 +0.2 5,065,593 + Xcc-8004.5324.1 0.58 +0.7 5,065,594 - Xcc-8004.5324.1 0.58 -1.1 5,065,797 + Xcc-8004.5326.1 0.19 -1.0 5,066,033 - -0.7 5,066,206 + -0.3 5,066,207 - +1.3 5,066,207 - +0.9 5,066,332 + Xcc-8004.5328.1 0.57 -0.1 5,066,332 + Xcc-8004.5328.1 0.57 -0.9 5,066,369 + Xcc-8004.5328.1 0.71 +0.7 5,066,369 + Xcc-8004.5328.1 0.71 -2.9 5,066,370 - Xcc-8004.5328.1 0.72 -0.6 5,066,370 - Xcc-8004.5328.1 0.72 -0.1 5,066,419 + -1.2 5,066,419 + -0.5 5,066,420 - +0.1 5,066,420 - +0.4 5,066,420 - +0.8 5,066,495 + -1.0 5,066,495 + +0.3 5,066,495 + +0.1 5,066,496 - +0.0 5,066,534 + -1.6 5,066,534 + +0.1 5,066,534 + +1.0 5,066,535 - -0.1 5,066,535 - -0.3 5,066,535 - +0.1 5,066,535 - +0.0 5,066,535 - +1.8 5,066,535 - -0.4 5,066,535 - -0.3 5,066,535 - -0.4 5,066,544 + -1.7 5,066,621 + +0.6 5,066,622 - -2.6 5,066,622 - +1.2 5,066,676 + +0.5 5,066,688 + Xcc-8004.5327.1 0.11 -2.5 5,066,688 + Xcc-8004.5327.1 0.11 -0.3 5,066,688 + Xcc-8004.5327.1 0.11 +0.0 5,066,689 - Xcc-8004.5327.1 0.11 +1.4 5,066,689 - Xcc-8004.5327.1 0.11 -0.9 5,066,754 + Xcc-8004.5327.1 0.14 +0.8 5,066,755 - Xcc-8004.5327.1 0.14 -1.5 5,066,755 - Xcc-8004.5327.1 0.14 +0.4 5,066,755 - Xcc-8004.5327.1 0.14 +0.7 5,066,879 + Xcc-8004.5327.1 0.21 +0.8 5,066,879 + Xcc-8004.5327.1 0.21 +0.1 5,066,879 + Xcc-8004.5327.1 0.21 +1.0 5,066,879 + Xcc-8004.5327.1 0.21 -0.1 5,066,880 - Xcc-8004.5327.1 0.21 +0.8 5,066,880 - Xcc-8004.5327.1 0.21 +0.9 5,066,880 - Xcc-8004.5327.1 0.21 -0.2 5,066,937 - Xcc-8004.5327.1 0.24 +0.2 5,066,943 + Xcc-8004.5327.1 0.24 +0.0 5,066,944 - Xcc-8004.5327.1 0.25 -1.2
Or see this region's nucleotide sequence