Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5230.1 and Xcc-8004.5231.1 are separated by 364 nucleotides Xcc-8004.5231.1 and Xcc-8004.5232.1 overlap by 7 nucleotides Xcc-8004.5232.1 and Xcc-8004.5233.1 overlap by 43 nucleotides Xcc-8004.5233.1 and Xcc-8004.5235.1 are separated by 51 nucleotides
Xcc-8004.5230.1: Xcc-8004.5230.1 - Gluconolactonase (EC 3.1.1.17), at 4,966,351 to 4,967,388
Xcc-8004.5230.1
Xcc-8004.5231.1: Xcc-8004.5231.1 - hypothetical protein, at 4,967,753 to 4,967,986
Xcc-8004.5231.1
Xcc-8004.5232.1: Xcc-8004.5232.1 - hypothetical protein, at 4,967,980 to 4,968,309
Xcc-8004.5232.1
Xcc-8004.5233.1: Xcc-8004.5233.1 - hypothetical protein, at 4,968,267 to 4,969,223
Xcc-8004.5233.1
Xcc-8004.5235.1: Xcc-8004.5235.1 - Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8), at 4,969,275 to 4,970,468
Xcc-8004.5235.1
Position (kb) 4967
4968
4969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4967.108 kb on - strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.329 kb on - strand at 4967.391 kb on + strand at 4967.443 kb on + strand at 4967.470 kb on + strand at 4967.471 kb on - strand at 4967.477 kb on - strand at 4967.538 kb on + strand at 4967.538 kb on + strand at 4967.538 kb on + strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.565 kb on + strand at 4967.565 kb on + strand at 4967.566 kb on - strand at 4967.566 kb on - strand at 4967.613 kb on + strand at 4967.613 kb on + strand at 4967.614 kb on - strand at 4967.614 kb on - strand at 4967.614 kb on - strand at 4967.617 kb on + strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.619 kb on + strand at 4967.620 kb on - strand at 4967.620 kb on - strand at 4967.674 kb on - strand at 4967.695 kb on + strand at 4967.695 kb on + strand at 4967.695 kb on + strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.700 kb on + strand at 4967.727 kb on + strand at 4967.894 kb on - strand, within Xcc-8004.5231.1 at 4967.927 kb on - strand, within Xcc-8004.5231.1 at 4967.927 kb on - strand, within Xcc-8004.5231.1 at 4967.937 kb on + strand, within Xcc-8004.5231.1 at 4967.946 kb on - strand, within Xcc-8004.5231.1 at 4967.975 kb on + strand at 4967.975 kb on + strand at 4968.091 kb on + strand, within Xcc-8004.5232.1 at 4968.092 kb on - strand, within Xcc-8004.5232.1 at 4968.092 kb on - strand, within Xcc-8004.5232.1 at 4968.098 kb on + strand, within Xcc-8004.5232.1 at 4968.098 kb on + strand, within Xcc-8004.5232.1 at 4968.099 kb on - strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.236 kb on - strand, within Xcc-8004.5232.1 at 4968.244 kb on + strand, within Xcc-8004.5232.1 at 4968.288 kb on + strand at 4968.288 kb on + strand at 4968.288 kb on + strand at 4968.289 kb on - strand at 4968.289 kb on - strand at 4968.290 kb on + strand at 4968.291 kb on - strand at 4968.312 kb on + strand at 4968.312 kb on + strand at 4968.312 kb on + strand at 4968.313 kb on - strand at 4968.313 kb on - strand at 4968.313 kb on - strand at 4968.400 kb on + strand, within Xcc-8004.5233.1 at 4968.400 kb on + strand, within Xcc-8004.5233.1 at 4968.401 kb on - strand, within Xcc-8004.5233.1 at 4968.410 kb on + strand, within Xcc-8004.5233.1 at 4968.412 kb on + strand, within Xcc-8004.5233.1 at 4968.412 kb on + strand, within Xcc-8004.5233.1 at 4968.452 kb on + strand, within Xcc-8004.5233.1 at 4968.480 kb on + strand, within Xcc-8004.5233.1 at 4968.480 kb on + strand, within Xcc-8004.5233.1 at 4968.480 kb on + strand, within Xcc-8004.5233.1 at 4968.480 kb on + strand, within Xcc-8004.5233.1 at 4968.480 kb on + strand, within Xcc-8004.5233.1 at 4968.481 kb on - strand, within Xcc-8004.5233.1 at 4968.481 kb on - strand, within Xcc-8004.5233.1 at 4968.582 kb on + strand, within Xcc-8004.5233.1 at 4968.599 kb on + strand, within Xcc-8004.5233.1 at 4968.600 kb on - strand, within Xcc-8004.5233.1 at 4968.631 kb on + strand, within Xcc-8004.5233.1 at 4968.631 kb on + strand, within Xcc-8004.5233.1 at 4968.665 kb on + strand, within Xcc-8004.5233.1 at 4968.666 kb on - strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.678 kb on + strand, within Xcc-8004.5233.1 at 4968.679 kb on - strand, within Xcc-8004.5233.1 at 4968.679 kb on - strand, within Xcc-8004.5233.1 at 4968.679 kb on - strand, within Xcc-8004.5233.1 at 4968.679 kb on - strand, within Xcc-8004.5233.1 at 4968.731 kb on + strand, within Xcc-8004.5233.1 at 4968.731 kb on + strand, within Xcc-8004.5233.1 at 4968.735 kb on + strand, within Xcc-8004.5233.1 at 4968.736 kb on - strand, within Xcc-8004.5233.1 at 4968.741 kb on + strand, within Xcc-8004.5233.1 at 4968.903 kb on + strand, within Xcc-8004.5233.1 at 4968.980 kb on - strand, within Xcc-8004.5233.1 at 4969.062 kb on + strand, within Xcc-8004.5233.1 at 4969.135 kb on + strand at 4969.135 kb on + strand at 4969.135 kb on + strand at 4969.138 kb on + strand at 4969.138 kb on + strand at 4969.138 kb on + strand at 4969.221 kb on + strand at 4969.237 kb on + strand at 4969.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,967,108 - Xcc-8004.5230.1 0.73 +0.1 4,967,132 + Xcc-8004.5230.1 0.75 +1.3 4,967,132 + Xcc-8004.5230.1 0.75 +0.0 4,967,132 + Xcc-8004.5230.1 0.75 -1.3 4,967,133 - Xcc-8004.5230.1 0.75 +1.0 4,967,133 - Xcc-8004.5230.1 0.75 -0.5 4,967,133 - Xcc-8004.5230.1 0.75 -0.5 4,967,329 - +1.1 4,967,391 + -0.6 4,967,443 + +1.0 4,967,470 + +0.5 4,967,471 - +0.0 4,967,477 - -0.9 4,967,538 + +0.9 4,967,538 + +1.1 4,967,538 + +0.3 4,967,539 - -0.1 4,967,539 - +3.0 4,967,539 - -0.3 4,967,539 - +0.1 4,967,565 + +1.3 4,967,565 + +1.7 4,967,566 - -0.3 4,967,566 - +0.1 4,967,613 + +1.1 4,967,613 + +0.2 4,967,614 - +0.5 4,967,614 - -0.6 4,967,614 - -1.1 4,967,617 + -0.9 4,967,618 - +0.3 4,967,618 - +1.7 4,967,618 - +0.4 4,967,618 - +0.9 4,967,619 + -0.1 4,967,620 - +0.3 4,967,620 - +0.7 4,967,674 - -0.4 4,967,695 + +0.1 4,967,695 + +0.0 4,967,695 + -2.6 4,967,696 - -0.6 4,967,696 - -0.1 4,967,696 - +0.1 4,967,696 - -0.3 4,967,696 - -0.1 4,967,696 - -0.2 4,967,700 + -1.1 4,967,727 + +0.4 4,967,894 - Xcc-8004.5231.1 0.60 -1.8 4,967,927 - Xcc-8004.5231.1 0.74 -1.0 4,967,927 - Xcc-8004.5231.1 0.74 +0.3 4,967,937 + Xcc-8004.5231.1 0.79 +0.1 4,967,946 - Xcc-8004.5231.1 0.82 -0.4 4,967,975 + +1.1 4,967,975 + +0.2 4,968,091 + Xcc-8004.5232.1 0.34 -0.9 4,968,092 - Xcc-8004.5232.1 0.34 -1.2 4,968,092 - Xcc-8004.5232.1 0.34 -1.3 4,968,098 + Xcc-8004.5232.1 0.36 -0.8 4,968,098 + Xcc-8004.5232.1 0.36 -1.3 4,968,099 - Xcc-8004.5232.1 0.36 +0.1 4,968,230 + Xcc-8004.5232.1 0.76 -0.7 4,968,230 + Xcc-8004.5232.1 0.76 +0.3 4,968,230 + Xcc-8004.5232.1 0.76 -0.3 4,968,236 - Xcc-8004.5232.1 0.78 +0.3 4,968,244 + Xcc-8004.5232.1 0.80 +0.5 4,968,288 + +1.0 4,968,288 + -2.5 4,968,288 + -0.5 4,968,289 - -0.3 4,968,289 - +0.4 4,968,290 + +1.0 4,968,291 - -0.6 4,968,312 + +0.2 4,968,312 + -1.1 4,968,312 + +1.4 4,968,313 - +0.7 4,968,313 - -1.3 4,968,313 - +1.7 4,968,400 + Xcc-8004.5233.1 0.14 +1.3 4,968,400 + Xcc-8004.5233.1 0.14 -0.1 4,968,401 - Xcc-8004.5233.1 0.14 +1.3 4,968,410 + Xcc-8004.5233.1 0.15 +0.0 4,968,412 + Xcc-8004.5233.1 0.15 -0.8 4,968,412 + Xcc-8004.5233.1 0.15 -0.1 4,968,452 + Xcc-8004.5233.1 0.19 +0.7 4,968,480 + Xcc-8004.5233.1 0.22 +0.4 4,968,480 + Xcc-8004.5233.1 0.22 -0.3 4,968,480 + Xcc-8004.5233.1 0.22 +1.1 4,968,480 + Xcc-8004.5233.1 0.22 -0.1 4,968,480 + Xcc-8004.5233.1 0.22 -0.2 4,968,481 - Xcc-8004.5233.1 0.22 -0.2 4,968,481 - Xcc-8004.5233.1 0.22 -0.0 4,968,582 + Xcc-8004.5233.1 0.33 -1.0 4,968,599 + Xcc-8004.5233.1 0.35 +0.8 4,968,600 - Xcc-8004.5233.1 0.35 +1.5 4,968,631 + Xcc-8004.5233.1 0.38 -0.7 4,968,631 + Xcc-8004.5233.1 0.38 -0.8 4,968,665 + Xcc-8004.5233.1 0.42 +0.4 4,968,666 - Xcc-8004.5233.1 0.42 -0.3 4,968,678 + Xcc-8004.5233.1 0.43 +0.1 4,968,678 + Xcc-8004.5233.1 0.43 -0.2 4,968,678 + Xcc-8004.5233.1 0.43 -0.4 4,968,678 + Xcc-8004.5233.1 0.43 -0.9 4,968,678 + Xcc-8004.5233.1 0.43 -1.3 4,968,678 + Xcc-8004.5233.1 0.43 -2.2 4,968,679 - Xcc-8004.5233.1 0.43 +0.7 4,968,679 - Xcc-8004.5233.1 0.43 +0.3 4,968,679 - Xcc-8004.5233.1 0.43 -0.1 4,968,679 - Xcc-8004.5233.1 0.43 +1.1 4,968,731 + Xcc-8004.5233.1 0.48 +0.5 4,968,731 + Xcc-8004.5233.1 0.48 +1.1 4,968,735 + Xcc-8004.5233.1 0.49 +1.7 4,968,736 - Xcc-8004.5233.1 0.49 -0.5 4,968,741 + Xcc-8004.5233.1 0.50 +0.6 4,968,903 + Xcc-8004.5233.1 0.66 +0.7 4,968,980 - Xcc-8004.5233.1 0.75 -1.9 4,969,062 + Xcc-8004.5233.1 0.83 -0.5 4,969,135 + +0.2 4,969,135 + -0.3 4,969,135 + -0.9 4,969,138 + +0.4 4,969,138 + +0.7 4,969,138 + +1.3 4,969,221 + -0.3 4,969,237 + +0.4 4,969,261 - +0.2
Or see this region's nucleotide sequence