Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4977.1 and Xcc-8004.4979.1 are separated by 8 nucleotides Xcc-8004.4979.1 and Xcc-8004.4980.1 are separated by 83 nucleotides
Xcc-8004.4977.1: Xcc-8004.4977.1 - Peptidase, at 4,726,200 to 4,728,008
Xcc-8004.4977.1
Xcc-8004.4979.1: Xcc-8004.4979.1 - Beta-lactamase related protein, at 4,728,017 to 4,728,961
Xcc-8004.4979.1
Xcc-8004.4980.1: Xcc-8004.4980.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 4,729,045 to 4,730,340
Xcc-8004.4980.1
Position (kb) 4728
4729 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4727.127 kb on + strand, within Xcc-8004.4977.1 at 4727.128 kb on - strand, within Xcc-8004.4977.1 at 4727.219 kb on - strand, within Xcc-8004.4977.1 at 4727.284 kb on + strand, within Xcc-8004.4977.1 at 4727.284 kb on + strand, within Xcc-8004.4977.1 at 4727.285 kb on - strand, within Xcc-8004.4977.1 at 4727.285 kb on - strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.305 kb on + strand, within Xcc-8004.4977.1 at 4727.305 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.674 kb on + strand, within Xcc-8004.4977.1 at 4727.674 kb on + strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.897 kb on + strand at 4727.897 kb on + strand at 4727.898 kb on - strand at 4727.921 kb on - strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.009 kb on - strand at 4728.009 kb on - strand at 4728.009 kb on - strand at 4728.147 kb on + strand, within Xcc-8004.4979.1 at 4728.148 kb on - strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.527 kb on - strand, within Xcc-8004.4979.1 at 4728.597 kb on + strand, within Xcc-8004.4979.1 at 4728.624 kb on + strand, within Xcc-8004.4979.1 at 4728.667 kb on + strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.889 kb on - strand at 4728.889 kb on - strand at 4728.997 kb on + strand at 4728.997 kb on + strand at 4728.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,727,127 + Xcc-8004.4977.1 0.51 -0.5 4,727,128 - Xcc-8004.4977.1 0.51 -1.2 4,727,219 - Xcc-8004.4977.1 0.56 -0.8 4,727,284 + Xcc-8004.4977.1 0.60 +0.2 4,727,284 + Xcc-8004.4977.1 0.60 -0.9 4,727,285 - Xcc-8004.4977.1 0.60 -0.6 4,727,285 - Xcc-8004.4977.1 0.60 +0.2 4,727,290 + Xcc-8004.4977.1 0.60 -0.6 4,727,290 + Xcc-8004.4977.1 0.60 +0.0 4,727,290 + Xcc-8004.4977.1 0.60 -1.8 4,727,290 + Xcc-8004.4977.1 0.60 +0.3 4,727,290 + Xcc-8004.4977.1 0.60 -0.1 4,727,290 + Xcc-8004.4977.1 0.60 -1.6 4,727,290 + Xcc-8004.4977.1 0.60 +0.0 4,727,290 + Xcc-8004.4977.1 0.60 +0.8 4,727,291 - Xcc-8004.4977.1 0.60 -1.6 4,727,291 - Xcc-8004.4977.1 0.60 -0.0 4,727,291 - Xcc-8004.4977.1 0.60 +0.1 4,727,305 + Xcc-8004.4977.1 0.61 -1.2 4,727,305 + Xcc-8004.4977.1 0.61 -0.2 4,727,308 + Xcc-8004.4977.1 0.61 +0.1 4,727,308 + Xcc-8004.4977.1 0.61 +0.6 4,727,308 + Xcc-8004.4977.1 0.61 -1.9 4,727,308 + Xcc-8004.4977.1 0.61 +1.6 4,727,309 - Xcc-8004.4977.1 0.61 +0.5 4,727,309 - Xcc-8004.4977.1 0.61 -0.8 4,727,309 - Xcc-8004.4977.1 0.61 -0.3 4,727,309 - Xcc-8004.4977.1 0.61 +0.2 4,727,309 - Xcc-8004.4977.1 0.61 -0.5 4,727,309 - Xcc-8004.4977.1 0.61 +0.7 4,727,410 + Xcc-8004.4977.1 0.67 -0.4 4,727,410 + Xcc-8004.4977.1 0.67 -0.7 4,727,410 + Xcc-8004.4977.1 0.67 -1.9 4,727,674 + Xcc-8004.4977.1 0.81 +0.0 4,727,674 + Xcc-8004.4977.1 0.81 -0.6 4,727,675 - Xcc-8004.4977.1 0.82 -0.3 4,727,675 - Xcc-8004.4977.1 0.82 -1.5 4,727,675 - Xcc-8004.4977.1 0.82 -0.2 4,727,897 + +0.5 4,727,897 + +0.4 4,727,898 - +1.7 4,727,921 - -1.2 4,728,008 + -0.8 4,728,008 + -1.2 4,728,008 + -0.4 4,728,008 + -1.4 4,728,008 + +0.0 4,728,009 - -0.1 4,728,009 - +3.1 4,728,009 - +0.6 4,728,147 + Xcc-8004.4979.1 0.14 -0.9 4,728,148 - Xcc-8004.4979.1 0.14 -0.6 4,728,282 + Xcc-8004.4979.1 0.28 -1.2 4,728,282 + Xcc-8004.4979.1 0.28 -1.6 4,728,282 + Xcc-8004.4979.1 0.28 -0.8 4,728,283 - Xcc-8004.4979.1 0.28 -2.0 4,728,283 - Xcc-8004.4979.1 0.28 +0.4 4,728,283 - Xcc-8004.4979.1 0.28 -0.6 4,728,294 + Xcc-8004.4979.1 0.29 +0.8 4,728,294 + Xcc-8004.4979.1 0.29 -0.4 4,728,294 + Xcc-8004.4979.1 0.29 -0.2 4,728,294 + Xcc-8004.4979.1 0.29 -0.5 4,728,294 + Xcc-8004.4979.1 0.29 -1.6 4,728,295 - Xcc-8004.4979.1 0.29 -0.8 4,728,295 - Xcc-8004.4979.1 0.29 -1.4 4,728,295 - Xcc-8004.4979.1 0.29 -1.4 4,728,295 - Xcc-8004.4979.1 0.29 +0.6 4,728,295 - Xcc-8004.4979.1 0.29 +0.5 4,728,295 - Xcc-8004.4979.1 0.29 -0.7 4,728,526 + Xcc-8004.4979.1 0.54 -0.7 4,728,526 + Xcc-8004.4979.1 0.54 -0.8 4,728,527 - Xcc-8004.4979.1 0.54 -0.8 4,728,597 + Xcc-8004.4979.1 0.61 +2.3 4,728,624 + Xcc-8004.4979.1 0.64 -0.4 4,728,667 + Xcc-8004.4979.1 0.69 -0.8 4,728,668 - Xcc-8004.4979.1 0.69 -0.8 4,728,668 - Xcc-8004.4979.1 0.69 +0.3 4,728,668 - Xcc-8004.4979.1 0.69 -1.6 4,728,889 - -0.2 4,728,889 - +0.7 4,728,997 + -0.5 4,728,997 + -0.6 4,728,998 - -0.4
Or see this region's nucleotide sequence