Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.494.1 and Xcc-8004.495.1 overlap by 16 nucleotides Xcc-8004.495.1 and Xcc-8004.496.1 are separated by 43 nucleotides Xcc-8004.496.1 and Xcc-8004.497.1 are separated by 159 nucleotides
Xcc-8004.494.1: Xcc-8004.494.1 - Threonine dehydratase, catabolic (EC 4.3.1.19), at 454,013 to 454,972
Xcc-8004.494.1
Xcc-8004.495.1: Xcc-8004.495.1 - EpiH/GdmH-related protein, at 454,957 to 455,574
Xcc-8004.495.1
Xcc-8004.496.1: Xcc-8004.496.1 - Isopropylmalate/homocitrate/citramalate synthases, at 455,618 to 456,037
Xcc-8004.496.1
Xcc-8004.497.1: Xcc-8004.497.1 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 456,197 to 457,102
Xcc-8004.497.1
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 453.995 kb on + strand at 453.995 kb on + strand at 453.996 kb on - strand at 454.001 kb on - strand at 454.037 kb on + strand at 454.037 kb on + strand at 454.037 kb on + strand at 454.037 kb on + strand at 454.038 kb on - strand at 454.038 kb on - strand at 454.354 kb on + strand, within Xcc-8004.494.1 at 454.354 kb on + strand, within Xcc-8004.494.1 at 454.354 kb on + strand, within Xcc-8004.494.1 at 454.355 kb on - strand, within Xcc-8004.494.1 at 454.355 kb on - strand, within Xcc-8004.494.1 at 454.355 kb on - strand, within Xcc-8004.494.1 at 454.355 kb on - strand, within Xcc-8004.494.1 at 454.416 kb on + strand, within Xcc-8004.494.1 at 454.416 kb on + strand, within Xcc-8004.494.1 at 454.416 kb on + strand, within Xcc-8004.494.1 at 454.416 kb on + strand, within Xcc-8004.494.1 at 454.417 kb on - strand, within Xcc-8004.494.1 at 454.417 kb on - strand, within Xcc-8004.494.1 at 454.417 kb on - strand, within Xcc-8004.494.1 at 454.417 kb on - strand, within Xcc-8004.494.1 at 454.417 kb on - strand, within Xcc-8004.494.1 at 454.464 kb on - strand, within Xcc-8004.494.1 at 454.466 kb on - strand, within Xcc-8004.494.1 at 455.132 kb on - strand, within Xcc-8004.495.1 at 455.188 kb on + strand, within Xcc-8004.495.1 at 455.188 kb on + strand, within Xcc-8004.495.1 at 455.188 kb on + strand, within Xcc-8004.495.1 at 455.188 kb on + strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.189 kb on - strand, within Xcc-8004.495.1 at 455.201 kb on - strand, within Xcc-8004.495.1 at 455.536 kb on + strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.536 kb on + strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.537 kb on - strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.539 kb on + strand at 455.540 kb on - strand at 455.540 kb on - strand at 455.540 kb on - strand at 455.540 kb on - strand at 455.540 kb on - strand at 455.540 kb on - strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.584 kb on + strand at 455.585 kb on - strand at 455.585 kb on - strand at 455.585 kb on - strand at 455.585 kb on - strand at 455.585 kb on - strand at 455.585 kb on - strand at 455.663 kb on + strand, within Xcc-8004.496.1 at 455.663 kb on + strand, within Xcc-8004.496.1 at 455.663 kb on + strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.664 kb on - strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.666 kb on + strand, within Xcc-8004.496.1 at 455.667 kb on - strand, within Xcc-8004.496.1 at 455.667 kb on - strand, within Xcc-8004.496.1 at 455.667 kb on - strand, within Xcc-8004.496.1 at 455.667 kb on - strand, within Xcc-8004.496.1 at 455.667 kb on - strand, within Xcc-8004.496.1 at 455.805 kb on - strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.870 kb on + strand, within Xcc-8004.496.1 at 455.871 kb on - strand, within Xcc-8004.496.1 at 455.871 kb on - strand, within Xcc-8004.496.1 at 455.888 kb on + strand, within Xcc-8004.496.1 at 455.889 kb on - strand, within Xcc-8004.496.1 at 455.889 kb on - strand, within Xcc-8004.496.1 at 455.889 kb on - strand, within Xcc-8004.496.1 at 455.889 kb on - strand, within Xcc-8004.496.1 at 455.889 kb on - strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.933 kb on + strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.934 kb on - strand, within Xcc-8004.496.1 at 455.996 kb on + strand at 455.996 kb on + strand at 455.996 kb on + strand at 455.996 kb on + strand at 455.997 kb on - strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 455.999 kb on + strand at 456.000 kb on - strand at 456.000 kb on - strand at 456.000 kb on - strand at 456.000 kb on - strand at 456.000 kb on - strand at 456.000 kb on - strand at 456.067 kb on - strand at 456.067 kb on - strand at 456.067 kb on - strand at 456.086 kb on + strand at 456.086 kb on + strand at 456.087 kb on - strand at 456.148 kb on + strand at 456.148 kb on + strand at 456.148 kb on + strand at 456.148 kb on + strand at 456.148 kb on + strand at 456.172 kb on + strand at 456.172 kb on + strand at 456.172 kb on + strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.173 kb on - strand at 456.199 kb on - strand at 456.256 kb on - strand at 456.256 kb on - strand at 456.306 kb on + strand, within Xcc-8004.497.1 at 456.307 kb on - strand, within Xcc-8004.497.1 at 456.307 kb on - strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.498 kb on + strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1 at 456.499 kb on - strand, within Xcc-8004.497.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 453,995 + -0.9 453,995 + +0.6 453,996 - -0.5 454,001 - -1.9 454,037 + -0.9 454,037 + -0.5 454,037 + +0.6 454,037 + -0.4 454,038 - +0.1 454,038 - -1.2 454,354 + Xcc-8004.494.1 0.36 -1.9 454,354 + Xcc-8004.494.1 0.36 +0.4 454,354 + Xcc-8004.494.1 0.36 -0.6 454,355 - Xcc-8004.494.1 0.36 -0.9 454,355 - Xcc-8004.494.1 0.36 +0.9 454,355 - Xcc-8004.494.1 0.36 -0.2 454,355 - Xcc-8004.494.1 0.36 -1.1 454,416 + Xcc-8004.494.1 0.42 -0.4 454,416 + Xcc-8004.494.1 0.42 +0.8 454,416 + Xcc-8004.494.1 0.42 +0.7 454,416 + Xcc-8004.494.1 0.42 +0.5 454,417 - Xcc-8004.494.1 0.42 -1.4 454,417 - Xcc-8004.494.1 0.42 -1.7 454,417 - Xcc-8004.494.1 0.42 -0.7 454,417 - Xcc-8004.494.1 0.42 -1.2 454,417 - Xcc-8004.494.1 0.42 +0.6 454,464 - Xcc-8004.494.1 0.47 +0.3 454,466 - Xcc-8004.494.1 0.47 -2.5 455,132 - Xcc-8004.495.1 0.28 -1.9 455,188 + Xcc-8004.495.1 0.37 -3.1 455,188 + Xcc-8004.495.1 0.37 -2.8 455,188 + Xcc-8004.495.1 0.37 -2.9 455,188 + Xcc-8004.495.1 0.37 -2.2 455,189 - Xcc-8004.495.1 0.38 -3.1 455,189 - Xcc-8004.495.1 0.38 -0.4 455,189 - Xcc-8004.495.1 0.38 -1.7 455,189 - Xcc-8004.495.1 0.38 -3.6 455,189 - Xcc-8004.495.1 0.38 -2.4 455,189 - Xcc-8004.495.1 0.38 -2.7 455,189 - Xcc-8004.495.1 0.38 -3.1 455,189 - Xcc-8004.495.1 0.38 -2.1 455,189 - Xcc-8004.495.1 0.38 -1.7 455,189 - Xcc-8004.495.1 0.38 -1.6 455,201 - Xcc-8004.495.1 0.39 -1.1 455,536 + -3.5 455,536 + -0.8 455,536 + -2.8 455,536 + -3.2 455,536 + -1.5 455,536 + -0.4 455,536 + -1.5 455,537 - -2.8 455,537 - -2.1 455,537 - -0.8 455,537 - -1.3 455,537 - -1.7 455,537 - -2.6 455,537 - -2.4 455,539 + -1.8 455,539 + -1.3 455,539 + -1.5 455,539 + -0.9 455,539 + -0.2 455,539 + -1.8 455,539 + -1.8 455,539 + -1.4 455,540 - -0.4 455,540 - -0.8 455,540 - -1.6 455,540 - -0.1 455,540 - -1.4 455,540 - -1.5 455,584 + -0.5 455,584 + -1.7 455,584 + +0.7 455,584 + -0.2 455,584 + -0.4 455,584 + +0.4 455,584 + -0.4 455,584 + +0.6 455,584 + -0.4 455,584 + +0.1 455,584 + +0.1 455,585 - -0.8 455,585 - -0.6 455,585 - +0.3 455,585 - +0.6 455,585 - -0.3 455,585 - -2.0 455,663 + Xcc-8004.496.1 0.11 -0.9 455,663 + Xcc-8004.496.1 0.11 -0.4 455,663 + Xcc-8004.496.1 0.11 +0.8 455,664 - Xcc-8004.496.1 0.11 -1.1 455,664 - Xcc-8004.496.1 0.11 +0.1 455,664 - Xcc-8004.496.1 0.11 +0.6 455,664 - Xcc-8004.496.1 0.11 -0.6 455,664 - Xcc-8004.496.1 0.11 +0.0 455,664 - Xcc-8004.496.1 0.11 -1.2 455,666 + Xcc-8004.496.1 0.11 -0.3 455,666 + Xcc-8004.496.1 0.11 +0.3 455,666 + Xcc-8004.496.1 0.11 -1.4 455,666 + Xcc-8004.496.1 0.11 +0.5 455,666 + Xcc-8004.496.1 0.11 -0.1 455,666 + Xcc-8004.496.1 0.11 +1.0 455,666 + Xcc-8004.496.1 0.11 -1.3 455,666 + Xcc-8004.496.1 0.11 -1.8 455,666 + Xcc-8004.496.1 0.11 -0.0 455,666 + Xcc-8004.496.1 0.11 -1.0 455,666 + Xcc-8004.496.1 0.11 -1.2 455,666 + Xcc-8004.496.1 0.11 -0.9 455,667 - Xcc-8004.496.1 0.12 -0.5 455,667 - Xcc-8004.496.1 0.12 -0.6 455,667 - Xcc-8004.496.1 0.12 +0.1 455,667 - Xcc-8004.496.1 0.12 +0.1 455,667 - Xcc-8004.496.1 0.12 +0.2 455,805 - Xcc-8004.496.1 0.45 +0.2 455,870 + Xcc-8004.496.1 0.60 +0.9 455,870 + Xcc-8004.496.1 0.60 +0.4 455,870 + Xcc-8004.496.1 0.60 +0.2 455,870 + Xcc-8004.496.1 0.60 +0.8 455,870 + Xcc-8004.496.1 0.60 +0.0 455,870 + Xcc-8004.496.1 0.60 +0.0 455,871 - Xcc-8004.496.1 0.60 +0.6 455,871 - Xcc-8004.496.1 0.60 +0.1 455,888 + Xcc-8004.496.1 0.64 -0.0 455,889 - Xcc-8004.496.1 0.65 -1.1 455,889 - Xcc-8004.496.1 0.65 +0.2 455,889 - Xcc-8004.496.1 0.65 +0.3 455,889 - Xcc-8004.496.1 0.65 +0.1 455,889 - Xcc-8004.496.1 0.65 -0.9 455,933 + Xcc-8004.496.1 0.75 -0.4 455,933 + Xcc-8004.496.1 0.75 +1.1 455,933 + Xcc-8004.496.1 0.75 +0.1 455,933 + Xcc-8004.496.1 0.75 -0.8 455,933 + Xcc-8004.496.1 0.75 +1.0 455,933 + Xcc-8004.496.1 0.75 -0.4 455,933 + Xcc-8004.496.1 0.75 +0.6 455,933 + Xcc-8004.496.1 0.75 -1.2 455,933 + Xcc-8004.496.1 0.75 -0.8 455,933 + Xcc-8004.496.1 0.75 +1.0 455,933 + Xcc-8004.496.1 0.75 -0.4 455,933 + Xcc-8004.496.1 0.75 +0.2 455,933 + Xcc-8004.496.1 0.75 +0.9 455,933 + Xcc-8004.496.1 0.75 +0.3 455,933 + Xcc-8004.496.1 0.75 -1.3 455,933 + Xcc-8004.496.1 0.75 +0.3 455,934 - Xcc-8004.496.1 0.75 +0.1 455,934 - Xcc-8004.496.1 0.75 +0.3 455,934 - Xcc-8004.496.1 0.75 +0.9 455,934 - Xcc-8004.496.1 0.75 +2.0 455,934 - Xcc-8004.496.1 0.75 +0.3 455,934 - Xcc-8004.496.1 0.75 +1.4 455,934 - Xcc-8004.496.1 0.75 +0.9 455,934 - Xcc-8004.496.1 0.75 -1.2 455,934 - Xcc-8004.496.1 0.75 -1.4 455,934 - Xcc-8004.496.1 0.75 +0.7 455,934 - Xcc-8004.496.1 0.75 +0.5 455,934 - Xcc-8004.496.1 0.75 -0.3 455,934 - Xcc-8004.496.1 0.75 -0.1 455,934 - Xcc-8004.496.1 0.75 +0.6 455,934 - Xcc-8004.496.1 0.75 +0.9 455,996 + -0.3 455,996 + -0.3 455,996 + -0.7 455,996 + +0.8 455,997 - -0.1 455,999 + +1.3 455,999 + +0.5 455,999 + -1.1 455,999 + -0.3 455,999 + +2.2 455,999 + -0.3 455,999 + +0.5 455,999 + -0.1 456,000 - -0.9 456,000 - +0.6 456,000 - -0.1 456,000 - +0.1 456,000 - -0.0 456,000 - -0.2 456,067 - +0.4 456,067 - -0.3 456,067 - +0.1 456,086 + -0.2 456,086 + -0.1 456,087 - -1.2 456,148 + -0.4 456,148 + -1.1 456,148 + -0.0 456,148 + +0.6 456,148 + -0.2 456,172 + +0.6 456,172 + +0.3 456,172 + +0.8 456,173 - -0.0 456,173 - -0.5 456,173 - +0.1 456,173 - +0.1 456,173 - +0.2 456,173 - -0.1 456,173 - +1.1 456,199 - +0.6 456,256 - -0.8 456,256 - +0.9 456,306 + Xcc-8004.497.1 0.12 -0.7 456,307 - Xcc-8004.497.1 0.12 +0.9 456,307 - Xcc-8004.497.1 0.12 +0.6 456,498 + Xcc-8004.497.1 0.33 -0.4 456,498 + Xcc-8004.497.1 0.33 +0.3 456,498 + Xcc-8004.497.1 0.33 -0.0 456,498 + Xcc-8004.497.1 0.33 +0.3 456,498 + Xcc-8004.497.1 0.33 -0.3 456,498 + Xcc-8004.497.1 0.33 +0.1 456,498 + Xcc-8004.497.1 0.33 -0.5 456,498 + Xcc-8004.497.1 0.33 -0.6 456,499 - Xcc-8004.497.1 0.33 +0.6 456,499 - Xcc-8004.497.1 0.33 +1.4 456,499 - Xcc-8004.497.1 0.33 -1.5 456,499 - Xcc-8004.497.1 0.33 -1.1 456,499 - Xcc-8004.497.1 0.33 +0.6 456,499 - Xcc-8004.497.1 0.33 -0.6 456,499 - Xcc-8004.497.1 0.33 +0.1 456,499 - Xcc-8004.497.1 0.33 -0.2 456,499 - Xcc-8004.497.1 0.33 -1.2 456,499 - Xcc-8004.497.1 0.33 -0.1 456,499 - Xcc-8004.497.1 0.33 -0.2 456,499 - Xcc-8004.497.1 0.33 +0.3 456,499 - Xcc-8004.497.1 0.33 +4.0 456,499 - Xcc-8004.497.1 0.33 -0.5 456,499 - Xcc-8004.497.1 0.33 +0.1
Or see this region's nucleotide sequence