Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4773.1 and Xcc-8004.4774.1 overlap by 4 nucleotides Xcc-8004.4774.1 and Xcc-8004.4775.1 are separated by 8 nucleotides Xcc-8004.4775.1 and Xcc-8004.4776.1 overlap by 4 nucleotides Xcc-8004.4776.1 and Xcc-8004.4777.1 are separated by 75 nucleotides
Xcc-8004.4773.1: Xcc-8004.4773.1 - Uracil-DNA glycosylase, family 1, at 4,541,726 to 4,542,451
Xcc-8004.4773.1
Xcc-8004.4774.1: Xcc-8004.4774.1 - Response regulator protein, at 4,542,448 to 4,543,290
Xcc-8004.4774.1
Xcc-8004.4775.1: Xcc-8004.4775.1 - Cell division protein FtsX, at 4,543,299 to 4,544,249
Xcc-8004.4775.1
Xcc-8004.4776.1: Xcc-8004.4776.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,544,246 to 4,544,932
Xcc-8004.4776.1
Xcc-8004.4777.1: Xcc-8004.4777.1 - ATP-dependent RNA helicase RhlB, at 4,545,008 to 4,546,777
Xcc-8004.4777.1
Position (kb) 4543
4544
4545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4542.451 kb on + strand at 4542.451 kb on + strand at 4542.451 kb on + strand at 4542.451 kb on + strand at 4542.452 kb on - strand at 4542.452 kb on - strand at 4542.632 kb on + strand, within Xcc-8004.4774.1 at 4542.632 kb on + strand, within Xcc-8004.4774.1 at 4542.632 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.857 kb on + strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.858 kb on - strand, within Xcc-8004.4774.1 at 4542.896 kb on + strand, within Xcc-8004.4774.1 at 4542.896 kb on + strand, within Xcc-8004.4774.1 at 4542.896 kb on + strand, within Xcc-8004.4774.1 at 4542.896 kb on + strand, within Xcc-8004.4774.1 at 4542.897 kb on - strand, within Xcc-8004.4774.1 at 4542.897 kb on - strand, within Xcc-8004.4774.1 at 4542.897 kb on - strand, within Xcc-8004.4774.1 at 4542.897 kb on - strand, within Xcc-8004.4774.1 at 4542.947 kb on + strand, within Xcc-8004.4774.1 at 4542.947 kb on + strand, within Xcc-8004.4774.1 at 4542.947 kb on + strand, within Xcc-8004.4774.1 at 4542.947 kb on + strand, within Xcc-8004.4774.1 at 4542.947 kb on + strand, within Xcc-8004.4774.1 at 4542.959 kb on + strand, within Xcc-8004.4774.1 at 4542.959 kb on + strand, within Xcc-8004.4774.1 at 4542.959 kb on + strand, within Xcc-8004.4774.1 at 4542.959 kb on + strand, within Xcc-8004.4774.1 at 4542.959 kb on + strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4542.960 kb on - strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.025 kb on + strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.026 kb on - strand, within Xcc-8004.4774.1 at 4543.216 kb on + strand at 4543.216 kb on + strand at 4543.376 kb on + strand at 4543.424 kb on + strand, within Xcc-8004.4775.1 at 4543.424 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.466 kb on + strand, within Xcc-8004.4775.1 at 4543.466 kb on + strand, within Xcc-8004.4775.1 at 4543.467 kb on - strand, within Xcc-8004.4775.1 at 4543.467 kb on - strand, within Xcc-8004.4775.1 at 4543.544 kb on - strand, within Xcc-8004.4775.1 at 4543.544 kb on - strand, within Xcc-8004.4775.1 at 4543.623 kb on - strand, within Xcc-8004.4775.1 at 4543.637 kb on + strand, within Xcc-8004.4775.1 at 4543.638 kb on - strand, within Xcc-8004.4775.1 at 4543.638 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.838 kb on + strand, within Xcc-8004.4775.1 at 4543.838 kb on + strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.895 kb on + strand at 4544.895 kb on + strand at 4544.895 kb on + strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.941 kb on + strand at 4544.942 kb on - strand at 4545.004 kb on + strand at 4545.004 kb on + strand at 4545.004 kb on + strand at 4545.005 kb on - strand at 4545.005 kb on - strand at 4545.005 kb on - strand at 4545.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,542,451 + +0.2 4,542,451 + -0.1 4,542,451 + -0.1 4,542,451 + +0.3 4,542,452 - +0.8 4,542,452 - -0.5 4,542,632 + Xcc-8004.4774.1 0.22 +0.0 4,542,632 + Xcc-8004.4774.1 0.22 -0.2 4,542,632 + Xcc-8004.4774.1 0.22 -0.5 4,542,857 + Xcc-8004.4774.1 0.49 -0.6 4,542,857 + Xcc-8004.4774.1 0.49 +0.7 4,542,857 + Xcc-8004.4774.1 0.49 -0.2 4,542,857 + Xcc-8004.4774.1 0.49 +0.2 4,542,857 + Xcc-8004.4774.1 0.49 +1.3 4,542,857 + Xcc-8004.4774.1 0.49 +0.2 4,542,857 + Xcc-8004.4774.1 0.49 -0.3 4,542,857 + Xcc-8004.4774.1 0.49 +1.7 4,542,857 + Xcc-8004.4774.1 0.49 -0.2 4,542,858 - Xcc-8004.4774.1 0.49 +0.1 4,542,858 - Xcc-8004.4774.1 0.49 +0.9 4,542,858 - Xcc-8004.4774.1 0.49 -0.7 4,542,858 - Xcc-8004.4774.1 0.49 -0.7 4,542,858 - Xcc-8004.4774.1 0.49 -0.5 4,542,858 - Xcc-8004.4774.1 0.49 -0.5 4,542,858 - Xcc-8004.4774.1 0.49 +0.2 4,542,896 + Xcc-8004.4774.1 0.53 +0.6 4,542,896 + Xcc-8004.4774.1 0.53 -1.7 4,542,896 + Xcc-8004.4774.1 0.53 -1.2 4,542,896 + Xcc-8004.4774.1 0.53 -1.8 4,542,897 - Xcc-8004.4774.1 0.53 -0.8 4,542,897 - Xcc-8004.4774.1 0.53 -2.5 4,542,897 - Xcc-8004.4774.1 0.53 -0.4 4,542,897 - Xcc-8004.4774.1 0.53 +0.1 4,542,947 + Xcc-8004.4774.1 0.59 +0.1 4,542,947 + Xcc-8004.4774.1 0.59 +1.1 4,542,947 + Xcc-8004.4774.1 0.59 -0.8 4,542,947 + Xcc-8004.4774.1 0.59 +1.1 4,542,947 + Xcc-8004.4774.1 0.59 +0.4 4,542,959 + Xcc-8004.4774.1 0.61 +0.8 4,542,959 + Xcc-8004.4774.1 0.61 -0.6 4,542,959 + Xcc-8004.4774.1 0.61 -0.3 4,542,959 + Xcc-8004.4774.1 0.61 -1.3 4,542,959 + Xcc-8004.4774.1 0.61 +0.3 4,542,960 - Xcc-8004.4774.1 0.61 +0.4 4,542,960 - Xcc-8004.4774.1 0.61 -0.6 4,542,960 - Xcc-8004.4774.1 0.61 -0.7 4,542,960 - Xcc-8004.4774.1 0.61 -0.8 4,542,960 - Xcc-8004.4774.1 0.61 +0.4 4,542,960 - Xcc-8004.4774.1 0.61 -0.0 4,542,960 - Xcc-8004.4774.1 0.61 +0.5 4,542,960 - Xcc-8004.4774.1 0.61 -0.2 4,542,960 - Xcc-8004.4774.1 0.61 -0.7 4,543,025 + Xcc-8004.4774.1 0.68 -0.0 4,543,025 + Xcc-8004.4774.1 0.68 +0.0 4,543,025 + Xcc-8004.4774.1 0.68 +0.1 4,543,025 + Xcc-8004.4774.1 0.68 +0.8 4,543,025 + Xcc-8004.4774.1 0.68 -1.0 4,543,025 + Xcc-8004.4774.1 0.68 +0.9 4,543,025 + Xcc-8004.4774.1 0.68 -0.8 4,543,025 + Xcc-8004.4774.1 0.68 +0.2 4,543,025 + Xcc-8004.4774.1 0.68 -0.8 4,543,025 + Xcc-8004.4774.1 0.68 +0.4 4,543,025 + Xcc-8004.4774.1 0.68 +0.8 4,543,025 + Xcc-8004.4774.1 0.68 +0.4 4,543,025 + Xcc-8004.4774.1 0.68 -2.0 4,543,025 + Xcc-8004.4774.1 0.68 +0.1 4,543,025 + Xcc-8004.4774.1 0.68 -1.0 4,543,025 + Xcc-8004.4774.1 0.68 +0.4 4,543,025 + Xcc-8004.4774.1 0.68 +0.3 4,543,026 - Xcc-8004.4774.1 0.69 +0.3 4,543,026 - Xcc-8004.4774.1 0.69 +0.2 4,543,026 - Xcc-8004.4774.1 0.69 +1.8 4,543,026 - Xcc-8004.4774.1 0.69 +1.6 4,543,026 - Xcc-8004.4774.1 0.69 -0.5 4,543,026 - Xcc-8004.4774.1 0.69 -0.4 4,543,026 - Xcc-8004.4774.1 0.69 +0.2 4,543,026 - Xcc-8004.4774.1 0.69 +0.6 4,543,026 - Xcc-8004.4774.1 0.69 -0.2 4,543,026 - Xcc-8004.4774.1 0.69 +0.5 4,543,026 - Xcc-8004.4774.1 0.69 -0.6 4,543,026 - Xcc-8004.4774.1 0.69 -2.0 4,543,026 - Xcc-8004.4774.1 0.69 +0.4 4,543,026 - Xcc-8004.4774.1 0.69 -0.2 4,543,026 - Xcc-8004.4774.1 0.69 +0.3 4,543,026 - Xcc-8004.4774.1 0.69 +0.4 4,543,026 - Xcc-8004.4774.1 0.69 -1.4 4,543,026 - Xcc-8004.4774.1 0.69 +2.1 4,543,026 - Xcc-8004.4774.1 0.69 -0.7 4,543,026 - Xcc-8004.4774.1 0.69 -0.4 4,543,026 - Xcc-8004.4774.1 0.69 +0.3 4,543,026 - Xcc-8004.4774.1 0.69 -0.2 4,543,216 + +0.3 4,543,216 + +1.2 4,543,376 + -2.4 4,543,424 + Xcc-8004.4775.1 0.13 -1.4 4,543,424 + Xcc-8004.4775.1 0.13 -0.0 4,543,438 + Xcc-8004.4775.1 0.15 -0.2 4,543,438 + Xcc-8004.4775.1 0.15 +0.2 4,543,438 + Xcc-8004.4775.1 0.15 -2.0 4,543,438 + Xcc-8004.4775.1 0.15 -0.8 4,543,438 + Xcc-8004.4775.1 0.15 -0.8 4,543,438 + Xcc-8004.4775.1 0.15 -0.4 4,543,438 + Xcc-8004.4775.1 0.15 -0.2 4,543,438 + Xcc-8004.4775.1 0.15 -0.1 4,543,439 - Xcc-8004.4775.1 0.15 +1.0 4,543,439 - Xcc-8004.4775.1 0.15 -0.2 4,543,439 - Xcc-8004.4775.1 0.15 -1.0 4,543,439 - Xcc-8004.4775.1 0.15 -1.6 4,543,439 - Xcc-8004.4775.1 0.15 -0.6 4,543,466 + Xcc-8004.4775.1 0.18 -0.2 4,543,466 + Xcc-8004.4775.1 0.18 -0.6 4,543,467 - Xcc-8004.4775.1 0.18 -1.5 4,543,467 - Xcc-8004.4775.1 0.18 -2.7 4,543,544 - Xcc-8004.4775.1 0.26 -1.1 4,543,544 - Xcc-8004.4775.1 0.26 -0.2 4,543,623 - Xcc-8004.4775.1 0.34 -0.2 4,543,637 + Xcc-8004.4775.1 0.36 -1.6 4,543,638 - Xcc-8004.4775.1 0.36 -0.2 4,543,638 - Xcc-8004.4775.1 0.36 -1.7 4,543,723 - Xcc-8004.4775.1 0.45 -0.4 4,543,723 - Xcc-8004.4775.1 0.45 -1.3 4,543,723 - Xcc-8004.4775.1 0.45 -1.0 4,543,838 + Xcc-8004.4775.1 0.57 -0.2 4,543,838 + Xcc-8004.4775.1 0.57 -1.6 4,543,839 - Xcc-8004.4775.1 0.57 -0.8 4,543,839 - Xcc-8004.4775.1 0.57 -0.2 4,543,839 - Xcc-8004.4775.1 0.57 -0.5 4,543,839 - Xcc-8004.4775.1 0.57 -0.3 4,543,839 - Xcc-8004.4775.1 0.57 -1.8 4,544,043 - Xcc-8004.4775.1 0.78 -1.8 4,544,043 - Xcc-8004.4775.1 0.78 -0.4 4,544,043 - Xcc-8004.4775.1 0.78 -1.0 4,544,673 + Xcc-8004.4776.1 0.62 +0.8 4,544,673 + Xcc-8004.4776.1 0.62 -0.2 4,544,673 + Xcc-8004.4776.1 0.62 -0.1 4,544,673 + Xcc-8004.4776.1 0.62 -1.8 4,544,673 + Xcc-8004.4776.1 0.62 -2.3 4,544,895 + -0.2 4,544,895 + -1.4 4,544,895 + -1.8 4,544,896 - -3.1 4,544,896 - +0.3 4,544,896 - -0.8 4,544,896 - -1.4 4,544,941 + +2.0 4,544,942 - -0.5 4,545,004 + -1.2 4,545,004 + -0.1 4,545,004 + +0.1 4,545,005 - -0.5 4,545,005 - +0.3 4,545,005 - +0.4 4,545,093 - -2.2
Or see this region's nucleotide sequence