Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4555.1 and Xcc-8004.4556.1 are separated by 40 nucleotides Xcc-8004.4556.1 and Xcc-8004.4557.1 are separated by 10 nucleotides Xcc-8004.4557.1 and Xcc-8004.4558.1 are separated by 63 nucleotides
Xcc-8004.4555.1: Xcc-8004.4555.1 - ABC transporter permease, at 4,350,872 to 4,352,143
Xcc-8004.4555.1
Xcc-8004.4556.1: Xcc-8004.4556.1 - Lipoprotein releasing system ATP-binding protein LolD, at 4,352,184 to 4,352,903
Xcc-8004.4556.1
Xcc-8004.4557.1: Xcc-8004.4557.1 - ABC transporter ATP-binding protein, at 4,352,914 to 4,354,206
Xcc-8004.4557.1
Xcc-8004.4558.1: Xcc-8004.4558.1 - ABC transporter permease, at 4,354,270 to 4,355,478
Xcc-8004.4558.1
Position (kb) 4352
4353
4354
4355 Strain fitness (log2 ratio) -2
-1
0
1 at 4351.979 kb on + strand, within Xcc-8004.4555.1 at 4351.979 kb on + strand, within Xcc-8004.4555.1 at 4351.980 kb on - strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.986 kb on - strand, within Xcc-8004.4555.1 at 4352.368 kb on - strand, within Xcc-8004.4556.1 at 4352.368 kb on - strand, within Xcc-8004.4556.1 at 4352.731 kb on + strand, within Xcc-8004.4556.1 at 4352.924 kb on - strand at 4352.926 kb on + strand at 4352.927 kb on - strand at 4352.927 kb on - strand at 4352.927 kb on - strand at 4353.038 kb on - strand at 4353.167 kb on + strand, within Xcc-8004.4557.1 at 4353.271 kb on + strand, within Xcc-8004.4557.1 at 4353.271 kb on + strand, within Xcc-8004.4557.1 at 4353.316 kb on + strand, within Xcc-8004.4557.1 at 4353.465 kb on + strand, within Xcc-8004.4557.1 at 4353.691 kb on + strand, within Xcc-8004.4557.1 at 4353.701 kb on - strand, within Xcc-8004.4557.1 at 4353.701 kb on - strand, within Xcc-8004.4557.1 at 4354.561 kb on + strand, within Xcc-8004.4558.1 at 4354.636 kb on + strand, within Xcc-8004.4558.1 at 4354.714 kb on - strand, within Xcc-8004.4558.1 at 4354.728 kb on + strand, within Xcc-8004.4558.1 at 4354.952 kb on - strand, within Xcc-8004.4558.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,351,979 + Xcc-8004.4555.1 0.87 -2.6 4,351,979 + Xcc-8004.4555.1 0.87 -0.3 4,351,980 - Xcc-8004.4555.1 0.87 -0.0 4,351,985 + Xcc-8004.4555.1 0.88 -1.0 4,351,985 + Xcc-8004.4555.1 0.88 -2.5 4,351,985 + Xcc-8004.4555.1 0.88 -1.9 4,351,985 + Xcc-8004.4555.1 0.88 -0.0 4,351,986 - Xcc-8004.4555.1 0.88 -1.0 4,352,368 - Xcc-8004.4556.1 0.26 +0.6 4,352,368 - Xcc-8004.4556.1 0.26 -0.3 4,352,731 + Xcc-8004.4556.1 0.76 +0.4 4,352,924 - -0.0 4,352,926 + +1.3 4,352,927 - -0.4 4,352,927 - +0.2 4,352,927 - -0.3 4,353,038 - +0.0 4,353,167 + Xcc-8004.4557.1 0.20 -0.0 4,353,271 + Xcc-8004.4557.1 0.28 +1.1 4,353,271 + Xcc-8004.4557.1 0.28 -0.2 4,353,316 + Xcc-8004.4557.1 0.31 -0.9 4,353,465 + Xcc-8004.4557.1 0.43 -0.6 4,353,691 + Xcc-8004.4557.1 0.60 -0.9 4,353,701 - Xcc-8004.4557.1 0.61 -0.9 4,353,701 - Xcc-8004.4557.1 0.61 -0.9 4,354,561 + Xcc-8004.4558.1 0.24 +0.4 4,354,636 + Xcc-8004.4558.1 0.30 +0.4 4,354,714 - Xcc-8004.4558.1 0.37 -0.9 4,354,728 + Xcc-8004.4558.1 0.38 +1.1 4,354,952 - Xcc-8004.4558.1 0.56 +0.1
Or see this region's nucleotide sequence