Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4518.1 and Xcc-8004.4520.1 are separated by 231 nucleotides Xcc-8004.4520.1 and Xcc-8004.4521.1 are separated by 262 nucleotides Xcc-8004.4521.1 and Xcc-8004.4522.1 overlap by 4 nucleotides Xcc-8004.4522.1 and Xcc-8004.4523.1 are separated by 5 nucleotides
Xcc-8004.4518.1: Xcc-8004.4518.1 - Cystathionine beta-synthase (EC 4.2.1.22), at 4,318,536 to 4,319,906
Xcc-8004.4518.1
Xcc-8004.4520.1: Xcc-8004.4520.1 - UptF protein, at 4,320,138 to 4,320,434
Xcc-8004.4520.1
Xcc-8004.4521.1: Xcc-8004.4521.1 - outer membrane protein, at 4,320,697 to 4,321,587
Xcc-8004.4521.1
Xcc-8004.4522.1: Xcc-8004.4522.1 - Outer membrane protein assembly factor YaeT precursor, at 4,321,584 to 4,322,060
Xcc-8004.4522.1
Xcc-8004.4523.1: Xcc-8004.4523.1 - Type II secretion system protein-like protein, at 4,322,066 to 4,323,199
Xcc-8004.4523.1
Position (kb) 4320
4321
4322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4319.867 kb on + strand at 4319.868 kb on - strand at 4319.886 kb on + strand at 4319.912 kb on + strand at 4319.936 kb on - strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.016 kb on + strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.017 kb on - strand at 4320.122 kb on + strand at 4320.122 kb on + strand at 4320.122 kb on + strand at 4320.123 kb on - strand at 4320.123 kb on - strand at 4320.123 kb on - strand at 4320.123 kb on - strand at 4320.123 kb on - strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.157 kb on + strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.158 kb on - strand at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.210 kb on + strand, within Xcc-8004.4520.1 at 4320.211 kb on - strand, within Xcc-8004.4520.1 at 4320.211 kb on - strand, within Xcc-8004.4520.1 at 4320.211 kb on - strand, within Xcc-8004.4520.1 at 4320.211 kb on - strand, within Xcc-8004.4520.1 at 4320.211 kb on - strand, within Xcc-8004.4520.1 at 4320.286 kb on + strand, within Xcc-8004.4520.1 at 4320.286 kb on + strand, within Xcc-8004.4520.1 at 4320.286 kb on + strand, within Xcc-8004.4520.1 at 4320.286 kb on + strand, within Xcc-8004.4520.1 at 4320.287 kb on - strand, within Xcc-8004.4520.1 at 4320.287 kb on - strand, within Xcc-8004.4520.1 at 4320.287 kb on - strand, within Xcc-8004.4520.1 at 4320.287 kb on - strand, within Xcc-8004.4520.1 at 4320.287 kb on - strand, within Xcc-8004.4520.1 at 4320.362 kb on + strand, within Xcc-8004.4520.1 at 4320.362 kb on + strand, within Xcc-8004.4520.1 at 4320.362 kb on + strand, within Xcc-8004.4520.1 at 4320.362 kb on + strand, within Xcc-8004.4520.1 at 4320.363 kb on - strand, within Xcc-8004.4520.1 at 4320.363 kb on - strand, within Xcc-8004.4520.1 at 4320.363 kb on - strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.375 kb on + strand, within Xcc-8004.4520.1 at 4320.376 kb on - strand, within Xcc-8004.4520.1 at 4320.376 kb on - strand, within Xcc-8004.4520.1 at 4320.486 kb on + strand at 4320.486 kb on + strand at 4320.486 kb on + strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.487 kb on - strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.530 kb on + strand at 4320.531 kb on - strand at 4320.531 kb on - strand at 4320.531 kb on - strand at 4320.563 kb on + strand at 4320.563 kb on + strand at 4320.563 kb on + strand at 4320.564 kb on - strand at 4320.564 kb on - strand at 4320.564 kb on - strand at 4320.564 kb on - strand at 4320.572 kb on - strand at 4320.679 kb on + strand at 4320.679 kb on + strand at 4320.679 kb on + strand at 4320.679 kb on + strand at 4320.679 kb on + strand at 4320.680 kb on - strand at 4320.680 kb on - strand at 4320.680 kb on - strand at 4320.680 kb on - strand at 4320.680 kb on - strand at 4320.890 kb on + strand, within Xcc-8004.4521.1 at 4320.890 kb on + strand, within Xcc-8004.4521.1 at 4320.890 kb on + strand, within Xcc-8004.4521.1 at 4320.891 kb on - strand, within Xcc-8004.4521.1 at 4320.891 kb on - strand, within Xcc-8004.4521.1 at 4320.891 kb on - strand, within Xcc-8004.4521.1 at 4321.434 kb on - strand, within Xcc-8004.4521.1 at 4321.488 kb on + strand, within Xcc-8004.4521.1 at 4321.488 kb on + strand, within Xcc-8004.4521.1 at 4321.488 kb on + strand, within Xcc-8004.4521.1 at 4321.488 kb on + strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.489 kb on - strand, within Xcc-8004.4521.1 at 4321.563 kb on + strand at 4321.563 kb on + strand at 4321.564 kb on - strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.565 kb on + strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.566 kb on - strand at 4321.731 kb on + strand, within Xcc-8004.4522.1 at 4321.732 kb on - strand, within Xcc-8004.4522.1 at 4321.816 kb on + strand, within Xcc-8004.4522.1 at 4321.816 kb on + strand, within Xcc-8004.4522.1 at 4321.816 kb on + strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.817 kb on - strand, within Xcc-8004.4522.1 at 4321.930 kb on + strand, within Xcc-8004.4522.1 at 4321.930 kb on + strand, within Xcc-8004.4522.1 at 4321.930 kb on + strand, within Xcc-8004.4522.1 at 4321.931 kb on - strand, within Xcc-8004.4522.1 at 4321.931 kb on - strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.948 kb on + strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.949 kb on - strand, within Xcc-8004.4522.1 at 4321.959 kb on - strand, within Xcc-8004.4522.1 at 4321.959 kb on - strand, within Xcc-8004.4522.1 at 4321.969 kb on - strand, within Xcc-8004.4522.1 at 4321.969 kb on - strand, within Xcc-8004.4522.1 at 4322.079 kb on - strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.144 kb on + strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.145 kb on - strand at 4322.169 kb on - strand at 4322.219 kb on + strand, within Xcc-8004.4523.1 at 4322.219 kb on + strand, within Xcc-8004.4523.1 at 4322.220 kb on - strand, within Xcc-8004.4523.1 at 4322.220 kb on - strand, within Xcc-8004.4523.1 at 4322.555 kb on + strand, within Xcc-8004.4523.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,319,867 + -0.5 4,319,868 - -0.0 4,319,886 + +0.5 4,319,912 + +1.5 4,319,936 - -0.1 4,320,016 + -0.6 4,320,016 + +0.1 4,320,016 + +0.3 4,320,016 + -0.0 4,320,016 + +0.7 4,320,016 + +0.2 4,320,016 + -2.1 4,320,016 + +0.7 4,320,016 + -1.0 4,320,016 + -0.3 4,320,016 + -0.7 4,320,016 + +0.0 4,320,016 + -1.4 4,320,017 - -0.6 4,320,017 - -0.3 4,320,017 - -0.7 4,320,017 - +0.7 4,320,017 - +1.2 4,320,017 - -1.0 4,320,017 - -0.3 4,320,017 - -0.3 4,320,122 + +0.2 4,320,122 + -2.3 4,320,122 + +0.1 4,320,123 - -0.8 4,320,123 - -0.5 4,320,123 - +0.6 4,320,123 - +0.2 4,320,123 - -0.5 4,320,157 + +0.5 4,320,157 + -1.3 4,320,157 + -0.6 4,320,157 + +0.7 4,320,157 + -1.3 4,320,157 + -0.6 4,320,157 + -2.0 4,320,157 + +0.1 4,320,157 + -0.5 4,320,157 + -1.5 4,320,158 - -0.2 4,320,158 - +0.5 4,320,158 - +0.1 4,320,158 - +0.6 4,320,158 - -0.7 4,320,158 - +0.5 4,320,158 - +1.0 4,320,158 - +0.2 4,320,210 + Xcc-8004.4520.1 0.24 -0.5 4,320,210 + Xcc-8004.4520.1 0.24 -0.7 4,320,210 + Xcc-8004.4520.1 0.24 +0.4 4,320,210 + Xcc-8004.4520.1 0.24 -0.3 4,320,210 + Xcc-8004.4520.1 0.24 -1.8 4,320,210 + Xcc-8004.4520.1 0.24 -1.9 4,320,211 - Xcc-8004.4520.1 0.25 -0.2 4,320,211 - Xcc-8004.4520.1 0.25 +0.1 4,320,211 - Xcc-8004.4520.1 0.25 +0.3 4,320,211 - Xcc-8004.4520.1 0.25 +0.1 4,320,211 - Xcc-8004.4520.1 0.25 -0.3 4,320,286 + Xcc-8004.4520.1 0.50 -1.5 4,320,286 + Xcc-8004.4520.1 0.50 +1.4 4,320,286 + Xcc-8004.4520.1 0.50 -0.1 4,320,286 + Xcc-8004.4520.1 0.50 -1.5 4,320,287 - Xcc-8004.4520.1 0.50 +0.5 4,320,287 - Xcc-8004.4520.1 0.50 -1.3 4,320,287 - Xcc-8004.4520.1 0.50 +0.3 4,320,287 - Xcc-8004.4520.1 0.50 -0.1 4,320,287 - Xcc-8004.4520.1 0.50 +0.3 4,320,362 + Xcc-8004.4520.1 0.75 -3.1 4,320,362 + Xcc-8004.4520.1 0.75 +0.7 4,320,362 + Xcc-8004.4520.1 0.75 -0.3 4,320,362 + Xcc-8004.4520.1 0.75 +0.9 4,320,363 - Xcc-8004.4520.1 0.76 +0.2 4,320,363 - Xcc-8004.4520.1 0.76 -0.5 4,320,363 - Xcc-8004.4520.1 0.76 +0.1 4,320,375 + Xcc-8004.4520.1 0.80 -1.9 4,320,375 + Xcc-8004.4520.1 0.80 -0.8 4,320,375 + Xcc-8004.4520.1 0.80 +0.4 4,320,375 + Xcc-8004.4520.1 0.80 -0.2 4,320,375 + Xcc-8004.4520.1 0.80 -0.0 4,320,375 + Xcc-8004.4520.1 0.80 -2.9 4,320,376 - Xcc-8004.4520.1 0.80 -0.1 4,320,376 - Xcc-8004.4520.1 0.80 +0.2 4,320,486 + -1.1 4,320,486 + -0.9 4,320,486 + -0.0 4,320,487 - -0.7 4,320,487 - +0.7 4,320,487 - -0.2 4,320,487 - -0.9 4,320,487 - -0.8 4,320,487 - -1.2 4,320,487 - +0.3 4,320,530 + +0.7 4,320,530 + -1.3 4,320,530 + +0.9 4,320,530 + -1.7 4,320,530 + -0.3 4,320,530 + -0.2 4,320,530 + -1.3 4,320,531 - +0.6 4,320,531 - +0.6 4,320,531 - -2.0 4,320,563 + -2.0 4,320,563 + +0.1 4,320,563 + -0.3 4,320,564 - +0.2 4,320,564 - -1.4 4,320,564 - -0.2 4,320,564 - -1.4 4,320,572 - +0.5 4,320,679 + -0.7 4,320,679 + -0.1 4,320,679 + -0.9 4,320,679 + -0.7 4,320,679 + -0.6 4,320,680 - -1.5 4,320,680 - +0.1 4,320,680 - -0.3 4,320,680 - -0.5 4,320,680 - -0.4 4,320,890 + Xcc-8004.4521.1 0.22 -0.1 4,320,890 + Xcc-8004.4521.1 0.22 -2.9 4,320,890 + Xcc-8004.4521.1 0.22 +0.5 4,320,891 - Xcc-8004.4521.1 0.22 -1.8 4,320,891 - Xcc-8004.4521.1 0.22 -1.7 4,320,891 - Xcc-8004.4521.1 0.22 -0.4 4,321,434 - Xcc-8004.4521.1 0.83 -2.2 4,321,488 + Xcc-8004.4521.1 0.89 -0.1 4,321,488 + Xcc-8004.4521.1 0.89 -1.0 4,321,488 + Xcc-8004.4521.1 0.89 +0.0 4,321,488 + Xcc-8004.4521.1 0.89 -1.1 4,321,489 - Xcc-8004.4521.1 0.89 +0.4 4,321,489 - Xcc-8004.4521.1 0.89 -1.2 4,321,489 - Xcc-8004.4521.1 0.89 -0.3 4,321,489 - Xcc-8004.4521.1 0.89 -1.0 4,321,489 - Xcc-8004.4521.1 0.89 -0.5 4,321,489 - Xcc-8004.4521.1 0.89 -0.7 4,321,563 + +0.7 4,321,563 + -1.3 4,321,564 - -1.2 4,321,565 + -0.6 4,321,565 + -2.0 4,321,565 + -0.5 4,321,565 + +0.7 4,321,565 + -1.0 4,321,565 + -1.3 4,321,565 + -2.1 4,321,565 + -0.8 4,321,565 + +0.4 4,321,566 - -1.6 4,321,566 - -0.3 4,321,566 - +0.9 4,321,566 - -1.3 4,321,566 - -0.4 4,321,566 - -0.0 4,321,566 - -0.7 4,321,566 - -0.8 4,321,566 - -1.2 4,321,566 - +0.7 4,321,566 - -0.5 4,321,566 - -1.3 4,321,731 + Xcc-8004.4522.1 0.31 -0.7 4,321,732 - Xcc-8004.4522.1 0.31 -1.6 4,321,816 + Xcc-8004.4522.1 0.49 -0.9 4,321,816 + Xcc-8004.4522.1 0.49 -1.6 4,321,816 + Xcc-8004.4522.1 0.49 -1.4 4,321,817 - Xcc-8004.4522.1 0.49 -1.4 4,321,817 - Xcc-8004.4522.1 0.49 -0.1 4,321,817 - Xcc-8004.4522.1 0.49 -0.0 4,321,817 - Xcc-8004.4522.1 0.49 -1.0 4,321,817 - Xcc-8004.4522.1 0.49 +1.7 4,321,817 - Xcc-8004.4522.1 0.49 -0.7 4,321,817 - Xcc-8004.4522.1 0.49 -0.6 4,321,930 + Xcc-8004.4522.1 0.73 -2.6 4,321,930 + Xcc-8004.4522.1 0.73 -0.2 4,321,930 + Xcc-8004.4522.1 0.73 -1.5 4,321,931 - Xcc-8004.4522.1 0.73 +0.4 4,321,931 - Xcc-8004.4522.1 0.73 -0.5 4,321,948 + Xcc-8004.4522.1 0.76 -1.4 4,321,948 + Xcc-8004.4522.1 0.76 -2.0 4,321,948 + Xcc-8004.4522.1 0.76 -0.9 4,321,948 + Xcc-8004.4522.1 0.76 +0.3 4,321,948 + Xcc-8004.4522.1 0.76 +0.0 4,321,948 + Xcc-8004.4522.1 0.76 -0.5 4,321,948 + Xcc-8004.4522.1 0.76 -1.7 4,321,948 + Xcc-8004.4522.1 0.76 +0.1 4,321,949 - Xcc-8004.4522.1 0.77 -0.2 4,321,949 - Xcc-8004.4522.1 0.77 -0.4 4,321,949 - Xcc-8004.4522.1 0.77 -1.7 4,321,949 - Xcc-8004.4522.1 0.77 -0.8 4,321,949 - Xcc-8004.4522.1 0.77 -1.3 4,321,949 - Xcc-8004.4522.1 0.77 -1.5 4,321,949 - Xcc-8004.4522.1 0.77 +0.6 4,321,949 - Xcc-8004.4522.1 0.77 -0.1 4,321,959 - Xcc-8004.4522.1 0.79 +2.3 4,321,959 - Xcc-8004.4522.1 0.79 -1.1 4,321,969 - Xcc-8004.4522.1 0.81 -0.5 4,321,969 - Xcc-8004.4522.1 0.81 -0.3 4,322,079 - -0.7 4,322,144 + +0.7 4,322,144 + +0.7 4,322,144 + +0.5 4,322,144 + +0.4 4,322,144 + -0.6 4,322,144 + +2.3 4,322,144 + +0.8 4,322,144 + -0.1 4,322,144 + -0.1 4,322,144 + -1.4 4,322,144 + -2.4 4,322,144 + -0.9 4,322,144 + -2.7 4,322,145 - -0.3 4,322,145 - -0.5 4,322,145 - -0.7 4,322,145 - +1.0 4,322,145 - -0.1 4,322,145 - +0.5 4,322,145 - +0.8 4,322,145 - +1.4 4,322,145 - +0.1 4,322,145 - -0.0 4,322,145 - -1.6 4,322,145 - -0.2 4,322,169 - +0.5 4,322,219 + Xcc-8004.4523.1 0.13 -1.0 4,322,219 + Xcc-8004.4523.1 0.13 -0.9 4,322,220 - Xcc-8004.4523.1 0.14 -0.7 4,322,220 - Xcc-8004.4523.1 0.14 +1.2 4,322,555 + Xcc-8004.4523.1 0.43 -0.1
Or see this region's nucleotide sequence