Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4473.1 and Xcc-8004.4477.1 are separated by 29 nucleotides Xcc-8004.4477.1 and Xcc-8004.4478.1 overlap by 1 nucleotides Xcc-8004.4478.1 and Xcc-8004.4480.1 are separated by 134 nucleotides
Xcc-8004.4473.1: Xcc-8004.4473.1 - FIG01212400: hypothetical protein, at 4,285,408 to 4,287,495
Xcc-8004.4473.1
Xcc-8004.4477.1: Xcc-8004.4477.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 4,287,525 to 4,288,166
Xcc-8004.4477.1
Xcc-8004.4478.1: Xcc-8004.4478.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 4,288,166 to 4,288,894
Xcc-8004.4478.1
Xcc-8004.4480.1: Xcc-8004.4480.1 - Phosphomannomutase (EC 5.4.2.8), at 4,289,029 to 4,290,375
Xcc-8004.4480.1
Position (kb) 4287
4288
4289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4286.648 kb on + strand, within Xcc-8004.4473.1 at 4286.649 kb on - strand, within Xcc-8004.4473.1 at 4286.736 kb on - strand, within Xcc-8004.4473.1 at 4286.736 kb on - strand, within Xcc-8004.4473.1 at 4286.773 kb on + strand, within Xcc-8004.4473.1 at 4286.774 kb on - strand, within Xcc-8004.4473.1 at 4286.783 kb on + strand, within Xcc-8004.4473.1 at 4286.784 kb on - strand, within Xcc-8004.4473.1 at 4286.784 kb on - strand, within Xcc-8004.4473.1 at 4286.784 kb on - strand, within Xcc-8004.4473.1 at 4286.874 kb on + strand, within Xcc-8004.4473.1 at 4286.883 kb on - strand, within Xcc-8004.4473.1 at 4286.883 kb on - strand, within Xcc-8004.4473.1 at 4286.951 kb on + strand, within Xcc-8004.4473.1 at 4287.007 kb on - strand, within Xcc-8004.4473.1 at 4287.112 kb on - strand, within Xcc-8004.4473.1 at 4287.152 kb on + strand, within Xcc-8004.4473.1 at 4287.152 kb on + strand, within Xcc-8004.4473.1 at 4287.152 kb on + strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.153 kb on - strand, within Xcc-8004.4473.1 at 4287.199 kb on + strand, within Xcc-8004.4473.1 at 4287.200 kb on - strand, within Xcc-8004.4473.1 at 4287.204 kb on + strand, within Xcc-8004.4473.1 at 4287.205 kb on - strand, within Xcc-8004.4473.1 at 4287.205 kb on - strand, within Xcc-8004.4473.1 at 4287.240 kb on + strand, within Xcc-8004.4473.1 at 4287.240 kb on + strand, within Xcc-8004.4473.1 at 4287.241 kb on - strand, within Xcc-8004.4473.1 at 4287.287 kb on + strand at 4287.469 kb on + strand at 4287.470 kb on - strand at 4287.519 kb on - strand at 4287.519 kb on - strand at 4287.526 kb on + strand at 4287.526 kb on + strand at 4287.527 kb on - strand at 4287.527 kb on - strand at 4287.527 kb on - strand at 4287.527 kb on - strand at 4287.527 kb on - strand at 4287.540 kb on + strand at 4287.540 kb on + strand at 4287.540 kb on + strand at 4287.540 kb on + strand at 4287.570 kb on + strand at 4287.571 kb on - strand at 4287.571 kb on - strand at 4287.571 kb on - strand at 4287.922 kb on + strand, within Xcc-8004.4477.1 at 4287.922 kb on + strand, within Xcc-8004.4477.1 at 4287.922 kb on + strand, within Xcc-8004.4477.1 at 4288.105 kb on + strand at 4288.105 kb on + strand at 4288.106 kb on - strand at 4288.106 kb on - strand at 4288.106 kb on - strand at 4288.106 kb on - strand at 4288.106 kb on - strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.167 kb on + strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.168 kb on - strand at 4288.227 kb on - strand at 4288.241 kb on - strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.242 kb on + strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.243 kb on - strand, within Xcc-8004.4478.1 at 4288.301 kb on + strand, within Xcc-8004.4478.1 at 4288.301 kb on + strand, within Xcc-8004.4478.1 at 4288.302 kb on - strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.446 kb on + strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.447 kb on - strand, within Xcc-8004.4478.1 at 4288.516 kb on - strand, within Xcc-8004.4478.1 at 4288.516 kb on - strand, within Xcc-8004.4478.1 at 4288.516 kb on - strand, within Xcc-8004.4478.1 at 4288.605 kb on + strand, within Xcc-8004.4478.1 at 4288.605 kb on + strand, within Xcc-8004.4478.1 at 4288.605 kb on + strand, within Xcc-8004.4478.1 at 4288.606 kb on - strand, within Xcc-8004.4478.1 at 4288.606 kb on - strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.638 kb on + strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.639 kb on - strand, within Xcc-8004.4478.1 at 4288.932 kb on - strand at 4288.932 kb on - strand at 4288.932 kb on - strand at 4288.932 kb on - strand at 4289.053 kb on + strand at 4289.053 kb on + strand at 4289.053 kb on + strand at 4289.053 kb on + strand at 4289.053 kb on + strand at 4289.054 kb on - strand at 4289.054 kb on - strand at 4289.054 kb on - strand at 4289.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,286,648 + Xcc-8004.4473.1 0.59 -0.3 4,286,649 - Xcc-8004.4473.1 0.59 +0.2 4,286,736 - Xcc-8004.4473.1 0.64 -1.5 4,286,736 - Xcc-8004.4473.1 0.64 -1.6 4,286,773 + Xcc-8004.4473.1 0.65 -0.5 4,286,774 - Xcc-8004.4473.1 0.65 -2.4 4,286,783 + Xcc-8004.4473.1 0.66 -0.3 4,286,784 - Xcc-8004.4473.1 0.66 -1.9 4,286,784 - Xcc-8004.4473.1 0.66 -1.3 4,286,784 - Xcc-8004.4473.1 0.66 -0.1 4,286,874 + Xcc-8004.4473.1 0.70 -0.7 4,286,883 - Xcc-8004.4473.1 0.71 -1.1 4,286,883 - Xcc-8004.4473.1 0.71 -0.4 4,286,951 + Xcc-8004.4473.1 0.74 -0.7 4,287,007 - Xcc-8004.4473.1 0.77 +0.5 4,287,112 - Xcc-8004.4473.1 0.82 +0.3 4,287,152 + Xcc-8004.4473.1 0.84 -0.7 4,287,152 + Xcc-8004.4473.1 0.84 -1.1 4,287,152 + Xcc-8004.4473.1 0.84 +0.2 4,287,153 - Xcc-8004.4473.1 0.84 -0.3 4,287,153 - Xcc-8004.4473.1 0.84 +0.4 4,287,153 - Xcc-8004.4473.1 0.84 +0.1 4,287,153 - Xcc-8004.4473.1 0.84 -1.9 4,287,153 - Xcc-8004.4473.1 0.84 +0.1 4,287,153 - Xcc-8004.4473.1 0.84 -0.7 4,287,153 - Xcc-8004.4473.1 0.84 -0.3 4,287,153 - Xcc-8004.4473.1 0.84 -0.0 4,287,199 + Xcc-8004.4473.1 0.86 -1.1 4,287,200 - Xcc-8004.4473.1 0.86 +0.2 4,287,204 + Xcc-8004.4473.1 0.86 -0.7 4,287,205 - Xcc-8004.4473.1 0.86 -0.3 4,287,205 - Xcc-8004.4473.1 0.86 -0.5 4,287,240 + Xcc-8004.4473.1 0.88 -0.6 4,287,240 + Xcc-8004.4473.1 0.88 -0.3 4,287,241 - Xcc-8004.4473.1 0.88 -0.6 4,287,287 + +1.0 4,287,469 + +0.6 4,287,470 - -0.4 4,287,519 - -0.4 4,287,519 - +0.4 4,287,526 + +0.3 4,287,526 + -0.0 4,287,527 - -0.9 4,287,527 - +1.1 4,287,527 - +0.5 4,287,527 - -1.1 4,287,527 - +1.0 4,287,540 + -1.3 4,287,540 + +0.2 4,287,540 + +0.2 4,287,540 + -0.9 4,287,570 + -0.6 4,287,571 - -0.3 4,287,571 - +0.5 4,287,571 - -0.4 4,287,922 + Xcc-8004.4477.1 0.62 -1.3 4,287,922 + Xcc-8004.4477.1 0.62 -1.6 4,287,922 + Xcc-8004.4477.1 0.62 +1.7 4,288,105 + +1.9 4,288,105 + -0.6 4,288,106 - -0.4 4,288,106 - -0.4 4,288,106 - +0.3 4,288,106 - +0.2 4,288,106 - +0.0 4,288,167 + -1.6 4,288,167 + -1.2 4,288,167 + +0.9 4,288,167 + +0.7 4,288,167 + -0.3 4,288,167 + -0.5 4,288,167 + -1.0 4,288,167 + -0.3 4,288,167 + -1.0 4,288,167 + +0.7 4,288,168 - +0.7 4,288,168 - -1.3 4,288,168 - +0.7 4,288,168 - -0.2 4,288,168 - +0.8 4,288,168 - -0.4 4,288,168 - -0.5 4,288,168 - -0.4 4,288,168 - +2.2 4,288,168 - -0.3 4,288,168 - -0.4 4,288,168 - +0.2 4,288,227 - +0.4 4,288,241 - Xcc-8004.4478.1 0.10 -1.7 4,288,242 + Xcc-8004.4478.1 0.10 -0.1 4,288,242 + Xcc-8004.4478.1 0.10 -1.1 4,288,242 + Xcc-8004.4478.1 0.10 -0.1 4,288,242 + Xcc-8004.4478.1 0.10 +1.7 4,288,242 + Xcc-8004.4478.1 0.10 -0.9 4,288,242 + Xcc-8004.4478.1 0.10 +0.7 4,288,242 + Xcc-8004.4478.1 0.10 -0.6 4,288,242 + Xcc-8004.4478.1 0.10 -1.3 4,288,242 + Xcc-8004.4478.1 0.10 -0.4 4,288,242 + Xcc-8004.4478.1 0.10 +0.5 4,288,243 - Xcc-8004.4478.1 0.11 +1.1 4,288,243 - Xcc-8004.4478.1 0.11 +1.3 4,288,243 - Xcc-8004.4478.1 0.11 +0.7 4,288,243 - Xcc-8004.4478.1 0.11 +0.1 4,288,243 - Xcc-8004.4478.1 0.11 -1.4 4,288,243 - Xcc-8004.4478.1 0.11 -1.0 4,288,243 - Xcc-8004.4478.1 0.11 -0.2 4,288,243 - Xcc-8004.4478.1 0.11 +0.2 4,288,301 + Xcc-8004.4478.1 0.19 +0.7 4,288,301 + Xcc-8004.4478.1 0.19 -0.2 4,288,302 - Xcc-8004.4478.1 0.19 +1.2 4,288,446 + Xcc-8004.4478.1 0.38 +0.4 4,288,446 + Xcc-8004.4478.1 0.38 -0.5 4,288,446 + Xcc-8004.4478.1 0.38 -0.7 4,288,446 + Xcc-8004.4478.1 0.38 +0.2 4,288,446 + Xcc-8004.4478.1 0.38 +0.3 4,288,446 + Xcc-8004.4478.1 0.38 -0.3 4,288,447 - Xcc-8004.4478.1 0.39 +0.1 4,288,447 - Xcc-8004.4478.1 0.39 +0.1 4,288,447 - Xcc-8004.4478.1 0.39 -1.1 4,288,447 - Xcc-8004.4478.1 0.39 -0.8 4,288,447 - Xcc-8004.4478.1 0.39 +0.5 4,288,447 - Xcc-8004.4478.1 0.39 +0.2 4,288,447 - Xcc-8004.4478.1 0.39 -0.5 4,288,447 - Xcc-8004.4478.1 0.39 -0.2 4,288,516 - Xcc-8004.4478.1 0.48 -0.6 4,288,516 - Xcc-8004.4478.1 0.48 -1.0 4,288,516 - Xcc-8004.4478.1 0.48 +0.9 4,288,605 + Xcc-8004.4478.1 0.60 -0.5 4,288,605 + Xcc-8004.4478.1 0.60 -1.6 4,288,605 + Xcc-8004.4478.1 0.60 -0.6 4,288,606 - Xcc-8004.4478.1 0.60 +0.1 4,288,606 - Xcc-8004.4478.1 0.60 -0.4 4,288,638 + Xcc-8004.4478.1 0.65 -0.3 4,288,638 + Xcc-8004.4478.1 0.65 -0.5 4,288,638 + Xcc-8004.4478.1 0.65 -0.9 4,288,638 + Xcc-8004.4478.1 0.65 -2.3 4,288,638 + Xcc-8004.4478.1 0.65 -0.3 4,288,638 + Xcc-8004.4478.1 0.65 -0.2 4,288,638 + Xcc-8004.4478.1 0.65 +0.1 4,288,638 + Xcc-8004.4478.1 0.65 -0.5 4,288,638 + Xcc-8004.4478.1 0.65 +0.3 4,288,638 + Xcc-8004.4478.1 0.65 +0.1 4,288,638 + Xcc-8004.4478.1 0.65 -1.1 4,288,638 + Xcc-8004.4478.1 0.65 -0.5 4,288,639 - Xcc-8004.4478.1 0.65 +0.7 4,288,639 - Xcc-8004.4478.1 0.65 -0.3 4,288,639 - Xcc-8004.4478.1 0.65 -0.5 4,288,639 - Xcc-8004.4478.1 0.65 +1.0 4,288,639 - Xcc-8004.4478.1 0.65 -0.2 4,288,639 - Xcc-8004.4478.1 0.65 +1.3 4,288,639 - Xcc-8004.4478.1 0.65 +0.5 4,288,639 - Xcc-8004.4478.1 0.65 -1.6 4,288,639 - Xcc-8004.4478.1 0.65 -1.7 4,288,639 - Xcc-8004.4478.1 0.65 +0.3 4,288,932 - -0.2 4,288,932 - -0.6 4,288,932 - +0.5 4,288,932 - -0.5 4,289,053 + +0.2 4,289,053 + +0.6 4,289,053 + +0.6 4,289,053 + -2.1 4,289,053 + +0.2 4,289,054 - -0.0 4,289,054 - -0.0 4,289,054 - -0.6 4,289,058 + -0.6
Or see this region's nucleotide sequence