Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4467.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4465.1 and Xcc-8004.4466.1 are separated by 2 nucleotidesXcc-8004.4466.1 and Xcc-8004.4467.1 overlap by 4 nucleotidesXcc-8004.4467.1 and Xcc-8004.4470.1 are separated by 543 nucleotides Xcc-8004.4465.1: Xcc-8004.4465.1 - ABC transporter ATP-binding protein USSDB6B, at 4,280,093 to 4,280,923 Xcc-8004.4465.1 Xcc-8004.4466.1: Xcc-8004.4466.1 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,280,926 to 4,281,852 Xcc-8004.4466.1 Xcc-8004.4467.1: Xcc-8004.4467.1 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 4,281,849 to 4,282,493 Xcc-8004.4467.1 Xcc-8004.4470.1: Xcc-8004.4470.1 - Alkylated DNA repair protein AlkB, at 4,283,037 to 4,283,636 Xcc-8004.4470.1 Position (kb) 4281 4282 4283Strain fitness (log2 ratio) -2 -1 0 1at 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.945 kb on - strandat 4280.945 kb on - strandat 4281.016 kb on + strandat 4281.016 kb on + strandat 4281.016 kb on + strandat 4281.016 kb on + strandat 4281.017 kb on - strandat 4281.017 kb on - strandat 4281.100 kb on + strand, within Xcc-8004.4466.1at 4281.100 kb on + strand, within Xcc-8004.4466.1at 4281.101 kb on - strand, within Xcc-8004.4466.1at 4281.101 kb on - strand, within Xcc-8004.4466.1at 4281.101 kb on - strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.584 kb on + strand, within Xcc-8004.4466.1at 4281.585 kb on - strand, within Xcc-8004.4466.1at 4281.585 kb on - strand, within Xcc-8004.4466.1at 4281.585 kb on - strand, within Xcc-8004.4466.1at 4281.696 kb on + strand, within Xcc-8004.4466.1at 4281.696 kb on + strand, within Xcc-8004.4466.1at 4281.696 kb on + strand, within Xcc-8004.4466.1at 4281.696 kb on + strand, within Xcc-8004.4466.1at 4281.696 kb on + strand, within Xcc-8004.4466.1at 4281.697 kb on - strand, within Xcc-8004.4466.1at 4281.697 kb on - strand, within Xcc-8004.4466.1at 4281.697 kb on - strand, within Xcc-8004.4466.1at 4281.697 kb on - strand, within Xcc-8004.4466.1at 4281.697 kb on - strand, within Xcc-8004.4466.1at 4281.951 kb on + strand, within Xcc-8004.4467.1at 4281.952 kb on - strand, within Xcc-8004.4467.1at 4281.952 kb on - strand, within Xcc-8004.4467.1at 4282.092 kb on + strand, within Xcc-8004.4467.1at 4282.092 kb on + strand, within Xcc-8004.4467.1at 4282.092 kb on + strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.093 kb on - strand, within Xcc-8004.4467.1at 4282.215 kb on + strand, within Xcc-8004.4467.1at 4282.216 kb on - strand, within Xcc-8004.4467.1at 4282.254 kb on + strand, within Xcc-8004.4467.1at 4282.340 kb on + strand, within Xcc-8004.4467.1at 4282.341 kb on - strand, within Xcc-8004.4467.1at 4282.341 kb on - strand, within Xcc-8004.4467.1at 4282.491 kb on + strandat 4282.491 kb on + strandat 4282.491 kb on + strandat 4282.491 kb on + strandat 4282.491 kb on + strandat 4282.492 kb on - strandat 4282.492 kb on - strandat 4282.492 kb on - strandat 4282.492 kb on - strandat 4282.492 kb on - strandat 4282.492 kb on - strandat 4282.519 kb on + strandat 4282.520 kb on - strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.568 kb on + strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.569 kb on - strandat 4282.577 kb on + strandat 4282.577 kb on + strandat 4282.577 kb on + strandat 4282.578 kb on - strandat 4282.578 kb on - strandat 4282.578 kb on - strandat 4282.578 kb on - strandat 4282.578 kb on - strandat 4282.578 kb on - strandat 4282.691 kb on + strandat 4282.691 kb on + strandat 4282.691 kb on + strandat 4282.691 kb on + strandat 4282.692 kb on - strandat 4282.692 kb on - strandat 4282.692 kb on - strandat 4282.692 kb on - strandat 4282.701 kb on + strandat 4282.701 kb on + strandat 4282.701 kb on + strandat 4282.701 kb on + strandat 4282.702 kb on - strandat 4282.702 kb on - strandat 4282.702 kb on - strandat 4282.729 kb on + strandat 4282.792 kb on + strandat 4282.793 kb on - strandat 4283.038 kb on + strandat 4283.038 kb on + strandat 4283.039 kb on - strandat 4283.103 kb on + strand, within Xcc-8004.4470.1at 4283.103 kb on + strand, within Xcc-8004.4470.1at 4283.128 kb on + strand, within Xcc-8004.4470.1at 4283.128 kb on + strand, within Xcc-8004.4470.1at 4283.129 kb on - strand, within Xcc-8004.4470.1at 4283.247 kb on + strand, within Xcc-8004.4470.1at 4283.248 kb on - strand, within Xcc-8004.4470.1at 4283.248 kb on - strand, within Xcc-8004.4470.1at 4283.294 kb on + strand, within Xcc-8004.4470.1at 4283.294 kb on + strand, within Xcc-8004.4470.1at 4283.295 kb on - strand, within Xcc-8004.4470.1at 4283.295 kb on - strand, within Xcc-8004.4470.1at 4283.382 kb on - strand, within Xcc-8004.4470.1at 4283.382 kb on - strand, within Xcc-8004.4470.1at 4283.438 kb on - strand, within Xcc-8004.4470.1at 4283.443 kb on + strand, within Xcc-8004.4470.1at 4283.444 kb on - strand, within Xcc-8004.4470.1at 4283.444 kb on - strand, within Xcc-8004.4470.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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4,280,944 + +0.5
4,280,944 + -1.7
4,280,944 + -0.9
4,280,944 + -0.6
4,280,944 + +0.5
4,280,945 - -0.9
4,280,945 - +0.4
4,281,016 + +0.2
4,281,016 + -1.0
4,281,016 + -0.3
4,281,016 + +0.1
4,281,017 - +0.6
4,281,017 - +1.3
4,281,100 + Xcc-8004.4466.1 0.19 -0.4
4,281,100 + Xcc-8004.4466.1 0.19 -0.2
4,281,101 - Xcc-8004.4466.1 0.19 +0.2
4,281,101 - Xcc-8004.4466.1 0.19 -2.6
4,281,101 - Xcc-8004.4466.1 0.19 -0.3
4,281,584 + Xcc-8004.4466.1 0.71 -0.7
4,281,584 + Xcc-8004.4466.1 0.71 -0.9
4,281,584 + Xcc-8004.4466.1 0.71 -2.5
4,281,584 + Xcc-8004.4466.1 0.71 -0.1
4,281,584 + Xcc-8004.4466.1 0.71 -1.2
4,281,584 + Xcc-8004.4466.1 0.71 -1.3
4,281,584 + Xcc-8004.4466.1 0.71 -1.3
4,281,584 + Xcc-8004.4466.1 0.71 -1.3
4,281,585 - Xcc-8004.4466.1 0.71 -0.3
4,281,585 - Xcc-8004.4466.1 0.71 +0.1
4,281,585 - Xcc-8004.4466.1 0.71 -0.5
4,281,696 + Xcc-8004.4466.1 0.83 -0.1
4,281,696 + Xcc-8004.4466.1 0.83 -0.7
4,281,696 + Xcc-8004.4466.1 0.83 -1.4
4,281,696 + Xcc-8004.4466.1 0.83 -1.3
4,281,696 + Xcc-8004.4466.1 0.83 +0.0
4,281,697 - Xcc-8004.4466.1 0.83 -1.5
4,281,697 - Xcc-8004.4466.1 0.83 +0.1
4,281,697 - Xcc-8004.4466.1 0.83 -0.9
4,281,697 - Xcc-8004.4466.1 0.83 -0.6
4,281,697 - Xcc-8004.4466.1 0.83 +1.0
4,281,951 + Xcc-8004.4467.1 0.16 +0.3
4,281,952 - Xcc-8004.4467.1 0.16 +1.7
4,281,952 - Xcc-8004.4467.1 0.16 -2.1
4,282,092 + Xcc-8004.4467.1 0.38 -0.7
4,282,092 + Xcc-8004.4467.1 0.38 +0.4
4,282,092 + Xcc-8004.4467.1 0.38 +0.1
4,282,093 - Xcc-8004.4467.1 0.38 +0.2
4,282,093 - Xcc-8004.4467.1 0.38 +0.7
4,282,093 - Xcc-8004.4467.1 0.38 -1.3
4,282,093 - Xcc-8004.4467.1 0.38 -1.6
4,282,093 - Xcc-8004.4467.1 0.38 -0.4
4,282,093 - Xcc-8004.4467.1 0.38 -2.0
4,282,215 + Xcc-8004.4467.1 0.57 -2.1
4,282,216 - Xcc-8004.4467.1 0.57 -0.9
4,282,254 + Xcc-8004.4467.1 0.63 -0.7
4,282,340 + Xcc-8004.4467.1 0.76 -0.6
4,282,341 - Xcc-8004.4467.1 0.76 -0.9
4,282,341 - Xcc-8004.4467.1 0.76 -1.2
4,282,491 + -0.0
4,282,491 + +0.7
4,282,491 + +1.1
4,282,491 + -0.2
4,282,491 + -0.0
4,282,492 - +0.1
4,282,492 - -1.0
4,282,492 - -1.0
4,282,492 - -0.6
4,282,492 - +0.5
4,282,492 - -1.2
4,282,519 + -0.9
4,282,520 - -0.3
4,282,568 + -0.0
4,282,568 + +0.3
4,282,568 + +0.4
4,282,568 + +1.7
4,282,568 + +0.7
4,282,568 + +0.4
4,282,568 + -0.6
4,282,568 + -0.1
4,282,568 + +0.7
4,282,568 + -0.3
4,282,569 - -0.3
4,282,569 - +0.1
4,282,569 - -0.9
4,282,569 - -0.1
4,282,569 - -0.6
4,282,569 - -0.6
4,282,569 - +0.9
4,282,569 - +0.5
4,282,569 - +0.7
4,282,569 - +0.7
4,282,569 - -0.9
4,282,569 - +0.6
4,282,577 + -0.4
4,282,577 + -0.2
4,282,577 + +1.2
4,282,578 - -0.6
4,282,578 - -1.1
4,282,578 - +0.9
4,282,578 - -1.6
4,282,578 - +0.9
4,282,578 - +0.5
4,282,691 + -0.6
4,282,691 + +0.7
4,282,691 + -0.6
4,282,691 + -0.7
4,282,692 - -0.3
4,282,692 - -0.6
4,282,692 - -0.2
4,282,692 - +0.0
4,282,701 + +0.5
4,282,701 + -1.3
4,282,701 + -0.4
4,282,701 + +0.5
4,282,702 - -0.7
4,282,702 - -0.8
4,282,702 - +0.1
4,282,729 + +1.0
4,282,792 + -1.1
4,282,793 - +0.2
4,283,038 + +0.4
4,283,038 + +1.5
4,283,039 - +0.9
4,283,103 + Xcc-8004.4470.1 0.11 -1.2
4,283,103 + Xcc-8004.4470.1 0.11 -0.8
4,283,128 + Xcc-8004.4470.1 0.15 -1.1
4,283,128 + Xcc-8004.4470.1 0.15 -0.6
4,283,129 - Xcc-8004.4470.1 0.15 -0.9
4,283,247 + Xcc-8004.4470.1 0.35 +0.2
4,283,248 - Xcc-8004.4470.1 0.35 -0.9
4,283,248 - Xcc-8004.4470.1 0.35 -0.4
4,283,294 + Xcc-8004.4470.1 0.43 -0.3
4,283,294 + Xcc-8004.4470.1 0.43 +0.5
4,283,295 - Xcc-8004.4470.1 0.43 -0.9
4,283,295 - Xcc-8004.4470.1 0.43 -1.5
4,283,382 - Xcc-8004.4470.1 0.57 -0.9
4,283,382 - Xcc-8004.4470.1 0.57 +0.5
4,283,438 - Xcc-8004.4470.1 0.67 -0.7
4,283,443 + Xcc-8004.4470.1 0.68 +0.3
4,283,444 - Xcc-8004.4470.1 0.68 +0.0
4,283,444 - Xcc-8004.4470.1 0.68 -0.6

Or see this region's nucleotide sequence