Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4464.1 and Xcc-8004.4465.1 are separated by 82 nucleotides Xcc-8004.4465.1 and Xcc-8004.4466.1 are separated by 2 nucleotides Xcc-8004.4466.1 and Xcc-8004.4467.1 overlap by 4 nucleotides
Xcc-8004.4464.1: Xcc-8004.4464.1 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 4,278,898 to 4,280,010
Xcc-8004.4464.1
Xcc-8004.4465.1: Xcc-8004.4465.1 - ABC transporter ATP-binding protein USSDB6B, at 4,280,093 to 4,280,923
Xcc-8004.4465.1
Xcc-8004.4466.1: Xcc-8004.4466.1 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,280,926 to 4,281,852
Xcc-8004.4466.1
Xcc-8004.4467.1: Xcc-8004.4467.1 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 4,281,849 to 4,282,493
Xcc-8004.4467.1
Position (kb) 4280
4281
4282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.756 kb on + strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.945 kb on - strand at 4280.945 kb on - strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.017 kb on - strand at 4281.017 kb on - strand at 4281.100 kb on + strand, within Xcc-8004.4466.1 at 4281.100 kb on + strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.951 kb on + strand, within Xcc-8004.4467.1 at 4281.952 kb on - strand, within Xcc-8004.4467.1 at 4281.952 kb on - strand, within Xcc-8004.4467.1 at 4282.092 kb on + strand, within Xcc-8004.4467.1 at 4282.092 kb on + strand, within Xcc-8004.4467.1 at 4282.092 kb on + strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.093 kb on - strand, within Xcc-8004.4467.1 at 4282.215 kb on + strand, within Xcc-8004.4467.1 at 4282.216 kb on - strand, within Xcc-8004.4467.1 at 4282.254 kb on + strand, within Xcc-8004.4467.1 at 4282.340 kb on + strand, within Xcc-8004.4467.1 at 4282.341 kb on - strand, within Xcc-8004.4467.1 at 4282.341 kb on - strand, within Xcc-8004.4467.1 at 4282.491 kb on + strand at 4282.491 kb on + strand at 4282.491 kb on + strand at 4282.491 kb on + strand at 4282.491 kb on + strand at 4282.492 kb on - strand at 4282.492 kb on - strand at 4282.492 kb on - strand at 4282.492 kb on - strand at 4282.492 kb on - strand at 4282.492 kb on - strand at 4282.519 kb on + strand at 4282.520 kb on - strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.568 kb on + strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.569 kb on - strand at 4282.577 kb on + strand at 4282.577 kb on + strand at 4282.577 kb on + strand at 4282.578 kb on - strand at 4282.578 kb on - strand at 4282.578 kb on - strand at 4282.578 kb on - strand at 4282.578 kb on - strand at 4282.578 kb on - strand at 4282.691 kb on + strand at 4282.691 kb on + strand at 4282.691 kb on + strand at 4282.691 kb on + strand at 4282.692 kb on - strand at 4282.692 kb on - strand at 4282.692 kb on - strand at 4282.692 kb on - strand at 4282.701 kb on + strand at 4282.701 kb on + strand at 4282.701 kb on + strand at 4282.701 kb on + strand at 4282.702 kb on - strand at 4282.702 kb on - strand at 4282.702 kb on - strand at 4282.729 kb on + strand at 4282.792 kb on + strand at 4282.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,280,489 + Xcc-8004.4465.1 0.48 +0.2 4,280,489 + Xcc-8004.4465.1 0.48 -1.2 4,280,628 + Xcc-8004.4465.1 0.64 -0.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -1.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -0.5 4,280,628 + Xcc-8004.4465.1 0.64 -0.2 4,280,629 - Xcc-8004.4465.1 0.65 +2.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.8 4,280,629 - Xcc-8004.4465.1 0.65 -1.6 4,280,749 + Xcc-8004.4465.1 0.79 -0.3 4,280,749 + Xcc-8004.4465.1 0.79 -2.1 4,280,756 + Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -1.8 4,280,944 + +0.5 4,280,944 + -1.7 4,280,944 + -0.9 4,280,944 + -0.6 4,280,944 + +0.5 4,280,945 - -0.9 4,280,945 - +0.4 4,281,016 + +0.2 4,281,016 + -1.0 4,281,016 + -0.3 4,281,016 + +0.1 4,281,017 - +0.6 4,281,017 - +1.3 4,281,100 + Xcc-8004.4466.1 0.19 -0.4 4,281,100 + Xcc-8004.4466.1 0.19 -0.2 4,281,101 - Xcc-8004.4466.1 0.19 +0.2 4,281,101 - Xcc-8004.4466.1 0.19 -2.6 4,281,101 - Xcc-8004.4466.1 0.19 -0.3 4,281,584 + Xcc-8004.4466.1 0.71 -0.7 4,281,584 + Xcc-8004.4466.1 0.71 -0.9 4,281,584 + Xcc-8004.4466.1 0.71 -2.5 4,281,584 + Xcc-8004.4466.1 0.71 -0.1 4,281,584 + Xcc-8004.4466.1 0.71 -1.2 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,585 - Xcc-8004.4466.1 0.71 -0.3 4,281,585 - Xcc-8004.4466.1 0.71 +0.1 4,281,585 - Xcc-8004.4466.1 0.71 -0.5 4,281,696 + Xcc-8004.4466.1 0.83 -0.1 4,281,696 + Xcc-8004.4466.1 0.83 -0.7 4,281,696 + Xcc-8004.4466.1 0.83 -1.4 4,281,696 + Xcc-8004.4466.1 0.83 -1.3 4,281,696 + Xcc-8004.4466.1 0.83 +0.0 4,281,697 - Xcc-8004.4466.1 0.83 -1.5 4,281,697 - Xcc-8004.4466.1 0.83 +0.1 4,281,697 - Xcc-8004.4466.1 0.83 -0.9 4,281,697 - Xcc-8004.4466.1 0.83 -0.6 4,281,697 - Xcc-8004.4466.1 0.83 +1.0 4,281,951 + Xcc-8004.4467.1 0.16 +0.3 4,281,952 - Xcc-8004.4467.1 0.16 +1.7 4,281,952 - Xcc-8004.4467.1 0.16 -2.1 4,282,092 + Xcc-8004.4467.1 0.38 -0.7 4,282,092 + Xcc-8004.4467.1 0.38 +0.4 4,282,092 + Xcc-8004.4467.1 0.38 +0.1 4,282,093 - Xcc-8004.4467.1 0.38 +0.2 4,282,093 - Xcc-8004.4467.1 0.38 +0.7 4,282,093 - Xcc-8004.4467.1 0.38 -1.3 4,282,093 - Xcc-8004.4467.1 0.38 -1.6 4,282,093 - Xcc-8004.4467.1 0.38 -0.4 4,282,093 - Xcc-8004.4467.1 0.38 -2.0 4,282,215 + Xcc-8004.4467.1 0.57 -2.1 4,282,216 - Xcc-8004.4467.1 0.57 -0.9 4,282,254 + Xcc-8004.4467.1 0.63 -0.7 4,282,340 + Xcc-8004.4467.1 0.76 -0.6 4,282,341 - Xcc-8004.4467.1 0.76 -0.9 4,282,341 - Xcc-8004.4467.1 0.76 -1.2 4,282,491 + -0.0 4,282,491 + +0.7 4,282,491 + +1.1 4,282,491 + -0.2 4,282,491 + -0.0 4,282,492 - +0.1 4,282,492 - -1.0 4,282,492 - -1.0 4,282,492 - -0.6 4,282,492 - +0.5 4,282,492 - -1.2 4,282,519 + -0.9 4,282,520 - -0.3 4,282,568 + -0.0 4,282,568 + +0.3 4,282,568 + +0.4 4,282,568 + +1.7 4,282,568 + +0.7 4,282,568 + +0.4 4,282,568 + -0.6 4,282,568 + -0.1 4,282,568 + +0.7 4,282,568 + -0.3 4,282,569 - -0.3 4,282,569 - +0.1 4,282,569 - -0.9 4,282,569 - -0.1 4,282,569 - -0.6 4,282,569 - -0.6 4,282,569 - +0.9 4,282,569 - +0.5 4,282,569 - +0.7 4,282,569 - +0.7 4,282,569 - -0.9 4,282,569 - +0.6 4,282,577 + -0.4 4,282,577 + -0.2 4,282,577 + +1.2 4,282,578 - -0.6 4,282,578 - -1.1 4,282,578 - +0.9 4,282,578 - -1.6 4,282,578 - +0.9 4,282,578 - +0.5 4,282,691 + -0.6 4,282,691 + +0.7 4,282,691 + -0.6 4,282,691 + -0.7 4,282,692 - -0.3 4,282,692 - -0.6 4,282,692 - -0.2 4,282,692 - +0.0 4,282,701 + +0.5 4,282,701 + -1.3 4,282,701 + -0.4 4,282,701 + +0.5 4,282,702 - -0.7 4,282,702 - -0.8 4,282,702 - +0.1 4,282,729 + +1.0 4,282,792 + -1.1 4,282,793 - +0.2
Or see this region's nucleotide sequence