Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4464.1 and Xcc-8004.4465.1 are separated by 82 nucleotides Xcc-8004.4465.1 and Xcc-8004.4466.1 are separated by 2 nucleotides Xcc-8004.4466.1 and Xcc-8004.4467.1 overlap by 4 nucleotides
Xcc-8004.4464.1: Xcc-8004.4464.1 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 4,278,898 to 4,280,010
Xcc-8004.4464.1
Xcc-8004.4465.1: Xcc-8004.4465.1 - ABC transporter ATP-binding protein USSDB6B, at 4,280,093 to 4,280,923
Xcc-8004.4465.1
Xcc-8004.4466.1: Xcc-8004.4466.1 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,280,926 to 4,281,852
Xcc-8004.4466.1
Xcc-8004.4467.1: Xcc-8004.4467.1 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 4,281,849 to 4,282,493
Xcc-8004.4467.1
Position (kb) 4280
4281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4279.415 kb on - strand, within Xcc-8004.4464.1 at 4279.415 kb on - strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.530 kb on - strand, within Xcc-8004.4464.1 at 4279.530 kb on - strand, within Xcc-8004.4464.1 at 4279.539 kb on + strand, within Xcc-8004.4464.1 at 4279.539 kb on + strand, within Xcc-8004.4464.1 at 4279.540 kb on - strand, within Xcc-8004.4464.1 at 4279.761 kb on + strand, within Xcc-8004.4464.1 at 4279.762 kb on - strand, within Xcc-8004.4464.1 at 4279.777 kb on + strand, within Xcc-8004.4464.1 at 4279.777 kb on + strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.756 kb on + strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.945 kb on - strand at 4280.945 kb on - strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.016 kb on + strand at 4281.017 kb on - strand at 4281.017 kb on - strand at 4281.100 kb on + strand, within Xcc-8004.4466.1 at 4281.100 kb on + strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.101 kb on - strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.584 kb on + strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.585 kb on - strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.696 kb on + strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1 at 4281.697 kb on - strand, within Xcc-8004.4466.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,279,415 - Xcc-8004.4464.1 0.46 -0.3 4,279,415 - Xcc-8004.4464.1 0.46 +0.0 4,279,480 + Xcc-8004.4464.1 0.52 -2.1 4,279,480 + Xcc-8004.4464.1 0.52 -1.0 4,279,480 + Xcc-8004.4464.1 0.52 +0.3 4,279,480 + Xcc-8004.4464.1 0.52 -1.0 4,279,480 + Xcc-8004.4464.1 0.52 -0.3 4,279,480 + Xcc-8004.4464.1 0.52 -0.4 4,279,480 + Xcc-8004.4464.1 0.52 +0.7 4,279,480 + Xcc-8004.4464.1 0.52 -0.4 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 -1.6 4,279,481 - Xcc-8004.4464.1 0.52 +0.0 4,279,481 - Xcc-8004.4464.1 0.52 -0.9 4,279,481 - Xcc-8004.4464.1 0.52 -0.5 4,279,481 - Xcc-8004.4464.1 0.52 -1.3 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 -1.3 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 +0.4 4,279,481 - Xcc-8004.4464.1 0.52 -0.6 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,526 + Xcc-8004.4464.1 0.56 -0.1 4,279,526 + Xcc-8004.4464.1 0.56 -2.0 4,279,526 + Xcc-8004.4464.1 0.56 -0.6 4,279,529 + Xcc-8004.4464.1 0.57 +0.9 4,279,529 + Xcc-8004.4464.1 0.57 -0.4 4,279,529 + Xcc-8004.4464.1 0.57 +1.1 4,279,529 + Xcc-8004.4464.1 0.57 -0.3 4,279,529 + Xcc-8004.4464.1 0.57 -0.5 4,279,529 + Xcc-8004.4464.1 0.57 +0.4 4,279,529 + Xcc-8004.4464.1 0.57 -0.2 4,279,529 + Xcc-8004.4464.1 0.57 +0.1 4,279,530 - Xcc-8004.4464.1 0.57 +0.1 4,279,530 - Xcc-8004.4464.1 0.57 -0.6 4,279,539 + Xcc-8004.4464.1 0.58 +0.7 4,279,539 + Xcc-8004.4464.1 0.58 -1.6 4,279,540 - Xcc-8004.4464.1 0.58 -1.6 4,279,761 + Xcc-8004.4464.1 0.78 -1.0 4,279,762 - Xcc-8004.4464.1 0.78 -1.0 4,279,777 + Xcc-8004.4464.1 0.79 +0.1 4,279,777 + Xcc-8004.4464.1 0.79 -1.3 4,279,778 - Xcc-8004.4464.1 0.79 -2.1 4,279,778 - Xcc-8004.4464.1 0.79 -0.1 4,279,778 - Xcc-8004.4464.1 0.79 -2.5 4,279,778 - Xcc-8004.4464.1 0.79 -0.9 4,279,778 - Xcc-8004.4464.1 0.79 -0.1 4,280,489 + Xcc-8004.4465.1 0.48 +0.2 4,280,489 + Xcc-8004.4465.1 0.48 -1.2 4,280,628 + Xcc-8004.4465.1 0.64 -0.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -1.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -0.5 4,280,628 + Xcc-8004.4465.1 0.64 -0.2 4,280,629 - Xcc-8004.4465.1 0.65 +2.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.8 4,280,629 - Xcc-8004.4465.1 0.65 -1.6 4,280,749 + Xcc-8004.4465.1 0.79 -0.3 4,280,749 + Xcc-8004.4465.1 0.79 -2.1 4,280,756 + Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -1.8 4,280,944 + +0.5 4,280,944 + -1.7 4,280,944 + -0.9 4,280,944 + -0.6 4,280,944 + +0.5 4,280,945 - -0.9 4,280,945 - +0.4 4,281,016 + +0.2 4,281,016 + -1.0 4,281,016 + -0.3 4,281,016 + +0.1 4,281,017 - +0.6 4,281,017 - +1.3 4,281,100 + Xcc-8004.4466.1 0.19 -0.4 4,281,100 + Xcc-8004.4466.1 0.19 -0.2 4,281,101 - Xcc-8004.4466.1 0.19 +0.2 4,281,101 - Xcc-8004.4466.1 0.19 -2.6 4,281,101 - Xcc-8004.4466.1 0.19 -0.3 4,281,584 + Xcc-8004.4466.1 0.71 -0.7 4,281,584 + Xcc-8004.4466.1 0.71 -0.9 4,281,584 + Xcc-8004.4466.1 0.71 -2.5 4,281,584 + Xcc-8004.4466.1 0.71 -0.1 4,281,584 + Xcc-8004.4466.1 0.71 -1.2 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,584 + Xcc-8004.4466.1 0.71 -1.3 4,281,585 - Xcc-8004.4466.1 0.71 -0.3 4,281,585 - Xcc-8004.4466.1 0.71 +0.1 4,281,585 - Xcc-8004.4466.1 0.71 -0.5 4,281,696 + Xcc-8004.4466.1 0.83 -0.1 4,281,696 + Xcc-8004.4466.1 0.83 -0.7 4,281,696 + Xcc-8004.4466.1 0.83 -1.4 4,281,696 + Xcc-8004.4466.1 0.83 -1.3 4,281,696 + Xcc-8004.4466.1 0.83 +0.0 4,281,697 - Xcc-8004.4466.1 0.83 -1.5 4,281,697 - Xcc-8004.4466.1 0.83 +0.1 4,281,697 - Xcc-8004.4466.1 0.83 -0.9 4,281,697 - Xcc-8004.4466.1 0.83 -0.6 4,281,697 - Xcc-8004.4466.1 0.83 +1.0
Or see this region's nucleotide sequence