Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4463.1 and Xcc-8004.4464.1 are separated by 87 nucleotides Xcc-8004.4464.1 and Xcc-8004.4465.1 are separated by 82 nucleotides Xcc-8004.4465.1 and Xcc-8004.4466.1 are separated by 2 nucleotides
Xcc-8004.4463.1: Xcc-8004.4463.1 - Integral membrane protein, at 4,277,473 to 4,278,810
Xcc-8004.4463.1
Xcc-8004.4464.1: Xcc-8004.4464.1 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 4,278,898 to 4,280,010
Xcc-8004.4464.1
Xcc-8004.4465.1: Xcc-8004.4465.1 - ABC transporter ATP-binding protein USSDB6B, at 4,280,093 to 4,280,923
Xcc-8004.4465.1
Xcc-8004.4466.1: Xcc-8004.4466.1 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,280,926 to 4,281,852
Xcc-8004.4466.1
Position (kb)
4278
4279
4280
4281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4278.069 kb on + strand, within Xcc-8004.4463.1 at 4278.069 kb on + strand, within Xcc-8004.4463.1 at 4278.069 kb on + strand, within Xcc-8004.4463.1 at 4278.069 kb on + strand, within Xcc-8004.4463.1 at 4278.069 kb on + strand, within Xcc-8004.4463.1 at 4278.070 kb on - strand, within Xcc-8004.4463.1 at 4278.108 kb on + strand, within Xcc-8004.4463.1 at 4278.109 kb on - strand, within Xcc-8004.4463.1 at 4278.109 kb on - strand, within Xcc-8004.4463.1 at 4278.218 kb on + strand, within Xcc-8004.4463.1 at 4278.218 kb on + strand, within Xcc-8004.4463.1 at 4278.218 kb on + strand, within Xcc-8004.4463.1 at 4278.218 kb on + strand, within Xcc-8004.4463.1 at 4278.399 kb on + strand, within Xcc-8004.4463.1 at 4278.399 kb on + strand, within Xcc-8004.4463.1 at 4278.399 kb on + strand, within Xcc-8004.4463.1 at 4278.399 kb on + strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.400 kb on - strand, within Xcc-8004.4463.1 at 4278.434 kb on + strand, within Xcc-8004.4463.1 at 4278.434 kb on + strand, within Xcc-8004.4463.1 at 4278.434 kb on + strand, within Xcc-8004.4463.1 at 4278.435 kb on - strand, within Xcc-8004.4463.1 at 4278.435 kb on - strand, within Xcc-8004.4463.1 at 4278.456 kb on - strand, within Xcc-8004.4463.1 at 4278.456 kb on - strand, within Xcc-8004.4463.1 at 4278.456 kb on - strand, within Xcc-8004.4463.1 at 4278.638 kb on + strand, within Xcc-8004.4463.1 at 4278.638 kb on + strand, within Xcc-8004.4463.1 at 4278.639 kb on - strand, within Xcc-8004.4463.1 at 4278.639 kb on - strand, within Xcc-8004.4463.1 at 4278.689 kb on + strand at 4278.689 kb on + strand at 4278.690 kb on - strand at 4278.779 kb on + strand at 4278.779 kb on + strand at 4278.779 kb on + strand at 4278.779 kb on + strand at 4278.779 kb on + strand at 4278.780 kb on - strand at 4278.780 kb on - strand at 4278.780 kb on - strand at 4278.839 kb on + strand at 4278.839 kb on + strand at 4278.839 kb on + strand at 4278.840 kb on - strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.871 kb on + strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.872 kb on - strand at 4278.923 kb on + strand at 4278.923 kb on + strand at 4278.923 kb on + strand at 4278.924 kb on - strand at 4278.924 kb on - strand at 4278.924 kb on - strand at 4278.924 kb on - strand at 4278.924 kb on - strand at 4278.924 kb on - strand at 4278.953 kb on + strand at 4279.076 kb on + strand, within Xcc-8004.4464.1 at 4279.415 kb on - strand, within Xcc-8004.4464.1 at 4279.415 kb on - strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.480 kb on + strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.481 kb on - strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.526 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.529 kb on + strand, within Xcc-8004.4464.1 at 4279.530 kb on - strand, within Xcc-8004.4464.1 at 4279.530 kb on - strand, within Xcc-8004.4464.1 at 4279.539 kb on + strand, within Xcc-8004.4464.1 at 4279.539 kb on + strand, within Xcc-8004.4464.1 at 4279.540 kb on - strand, within Xcc-8004.4464.1 at 4279.761 kb on + strand, within Xcc-8004.4464.1 at 4279.762 kb on - strand, within Xcc-8004.4464.1 at 4279.777 kb on + strand, within Xcc-8004.4464.1 at 4279.777 kb on + strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4279.778 kb on - strand, within Xcc-8004.4464.1 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.489 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.628 kb on + strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.629 kb on - strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.749 kb on + strand, within Xcc-8004.4465.1 at 4280.756 kb on + strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.757 kb on - strand, within Xcc-8004.4465.1 at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.944 kb on + strand at 4280.945 kb on - strand at 4280.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,278,069 + Xcc-8004.4463.1 0.45 -0.1 4,278,069 + Xcc-8004.4463.1 0.45 -0.1 4,278,069 + Xcc-8004.4463.1 0.45 +0.4 4,278,069 + Xcc-8004.4463.1 0.45 -0.2 4,278,069 + Xcc-8004.4463.1 0.45 -0.5 4,278,070 - Xcc-8004.4463.1 0.45 -1.2 4,278,108 + Xcc-8004.4463.1 0.47 -1.8 4,278,109 - Xcc-8004.4463.1 0.48 -0.1 4,278,109 - Xcc-8004.4463.1 0.48 +0.5 4,278,218 + Xcc-8004.4463.1 0.56 +0.1 4,278,218 + Xcc-8004.4463.1 0.56 -2.3 4,278,218 + Xcc-8004.4463.1 0.56 -0.9 4,278,218 + Xcc-8004.4463.1 0.56 -0.4 4,278,399 + Xcc-8004.4463.1 0.69 -0.1 4,278,399 + Xcc-8004.4463.1 0.69 -0.0 4,278,399 + Xcc-8004.4463.1 0.69 +0.2 4,278,399 + Xcc-8004.4463.1 0.69 -1.8 4,278,400 - Xcc-8004.4463.1 0.69 -1.3 4,278,400 - Xcc-8004.4463.1 0.69 +0.2 4,278,400 - Xcc-8004.4463.1 0.69 -1.7 4,278,400 - Xcc-8004.4463.1 0.69 -0.8 4,278,400 - Xcc-8004.4463.1 0.69 +0.6 4,278,400 - Xcc-8004.4463.1 0.69 -0.5 4,278,434 + Xcc-8004.4463.1 0.72 +0.0 4,278,434 + Xcc-8004.4463.1 0.72 -0.5 4,278,434 + Xcc-8004.4463.1 0.72 -1.4 4,278,435 - Xcc-8004.4463.1 0.72 -2.1 4,278,435 - Xcc-8004.4463.1 0.72 +1.5 4,278,456 - Xcc-8004.4463.1 0.73 -0.3 4,278,456 - Xcc-8004.4463.1 0.73 -0.0 4,278,456 - Xcc-8004.4463.1 0.73 +0.1 4,278,638 + Xcc-8004.4463.1 0.87 -1.4 4,278,638 + Xcc-8004.4463.1 0.87 +0.1 4,278,639 - Xcc-8004.4463.1 0.87 -0.9 4,278,639 - Xcc-8004.4463.1 0.87 +0.1 4,278,689 + -0.4 4,278,689 + -0.2 4,278,690 - +0.2 4,278,779 + +1.3 4,278,779 + +0.7 4,278,779 + +0.6 4,278,779 + +0.3 4,278,779 + -0.3 4,278,780 - +1.1 4,278,780 - +1.1 4,278,780 - -0.0 4,278,839 + -0.9 4,278,839 + -0.0 4,278,839 + -0.4 4,278,840 - -0.3 4,278,871 + -1.8 4,278,871 + +0.7 4,278,871 + +1.0 4,278,871 + -0.7 4,278,871 + -0.5 4,278,871 + -0.3 4,278,871 + +0.1 4,278,871 + -0.4 4,278,871 + +0.1 4,278,871 + -1.1 4,278,871 + -0.6 4,278,871 + -0.3 4,278,871 + -1.3 4,278,872 - -2.6 4,278,872 - +0.2 4,278,872 - +0.0 4,278,872 - -1.3 4,278,872 - +1.6 4,278,872 - +0.7 4,278,872 - +0.7 4,278,872 - +0.3 4,278,872 - -0.3 4,278,872 - +0.0 4,278,923 + -2.4 4,278,923 + +0.7 4,278,923 + -1.1 4,278,924 - -0.4 4,278,924 - -0.4 4,278,924 - -0.2 4,278,924 - -1.1 4,278,924 - -0.6 4,278,924 - -0.9 4,278,953 + +0.7 4,279,076 + Xcc-8004.4464.1 0.16 -2.5 4,279,415 - Xcc-8004.4464.1 0.46 -0.3 4,279,415 - Xcc-8004.4464.1 0.46 +0.0 4,279,480 + Xcc-8004.4464.1 0.52 -2.1 4,279,480 + Xcc-8004.4464.1 0.52 -1.0 4,279,480 + Xcc-8004.4464.1 0.52 +0.3 4,279,480 + Xcc-8004.4464.1 0.52 -1.0 4,279,480 + Xcc-8004.4464.1 0.52 -0.3 4,279,480 + Xcc-8004.4464.1 0.52 -0.4 4,279,480 + Xcc-8004.4464.1 0.52 +0.7 4,279,480 + Xcc-8004.4464.1 0.52 -0.4 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 -1.6 4,279,481 - Xcc-8004.4464.1 0.52 +0.0 4,279,481 - Xcc-8004.4464.1 0.52 -0.9 4,279,481 - Xcc-8004.4464.1 0.52 -0.5 4,279,481 - Xcc-8004.4464.1 0.52 -1.3 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 -1.3 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,481 - Xcc-8004.4464.1 0.52 +0.4 4,279,481 - Xcc-8004.4464.1 0.52 -0.6 4,279,481 - Xcc-8004.4464.1 0.52 +0.7 4,279,526 + Xcc-8004.4464.1 0.56 -0.1 4,279,526 + Xcc-8004.4464.1 0.56 -2.0 4,279,526 + Xcc-8004.4464.1 0.56 -0.6 4,279,529 + Xcc-8004.4464.1 0.57 +0.9 4,279,529 + Xcc-8004.4464.1 0.57 -0.4 4,279,529 + Xcc-8004.4464.1 0.57 +1.1 4,279,529 + Xcc-8004.4464.1 0.57 -0.3 4,279,529 + Xcc-8004.4464.1 0.57 -0.5 4,279,529 + Xcc-8004.4464.1 0.57 +0.4 4,279,529 + Xcc-8004.4464.1 0.57 -0.2 4,279,529 + Xcc-8004.4464.1 0.57 +0.1 4,279,530 - Xcc-8004.4464.1 0.57 +0.1 4,279,530 - Xcc-8004.4464.1 0.57 -0.6 4,279,539 + Xcc-8004.4464.1 0.58 +0.7 4,279,539 + Xcc-8004.4464.1 0.58 -1.6 4,279,540 - Xcc-8004.4464.1 0.58 -1.6 4,279,761 + Xcc-8004.4464.1 0.78 -1.0 4,279,762 - Xcc-8004.4464.1 0.78 -1.0 4,279,777 + Xcc-8004.4464.1 0.79 +0.1 4,279,777 + Xcc-8004.4464.1 0.79 -1.3 4,279,778 - Xcc-8004.4464.1 0.79 -2.1 4,279,778 - Xcc-8004.4464.1 0.79 -0.1 4,279,778 - Xcc-8004.4464.1 0.79 -2.5 4,279,778 - Xcc-8004.4464.1 0.79 -0.9 4,279,778 - Xcc-8004.4464.1 0.79 -0.1 4,280,489 + Xcc-8004.4465.1 0.48 +0.2 4,280,489 + Xcc-8004.4465.1 0.48 -1.2 4,280,628 + Xcc-8004.4465.1 0.64 -0.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -1.3 4,280,628 + Xcc-8004.4465.1 0.64 +0.4 4,280,628 + Xcc-8004.4465.1 0.64 -0.5 4,280,628 + Xcc-8004.4465.1 0.64 -0.2 4,280,629 - Xcc-8004.4465.1 0.65 +2.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.7 4,280,629 - Xcc-8004.4465.1 0.65 -1.8 4,280,629 - Xcc-8004.4465.1 0.65 -1.6 4,280,749 + Xcc-8004.4465.1 0.79 -0.3 4,280,749 + Xcc-8004.4465.1 0.79 -2.1 4,280,756 + Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -0.4 4,280,757 - Xcc-8004.4465.1 0.80 -1.8 4,280,944 + +0.5 4,280,944 + -1.7 4,280,944 + -0.9 4,280,944 + -0.6 4,280,944 + +0.5 4,280,945 - -0.9 4,280,945 - +0.4
Or see this region's nucleotide sequence