Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4464.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4463.1 and Xcc-8004.4464.1 are separated by 87 nucleotidesXcc-8004.4464.1 and Xcc-8004.4465.1 are separated by 82 nucleotidesXcc-8004.4465.1 and Xcc-8004.4466.1 are separated by 2 nucleotides Xcc-8004.4463.1: Xcc-8004.4463.1 - Integral membrane protein, at 4,277,473 to 4,278,810 Xcc-8004.4463.1 Xcc-8004.4464.1: Xcc-8004.4464.1 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 4,278,898 to 4,280,010 Xcc-8004.4464.1 Xcc-8004.4465.1: Xcc-8004.4465.1 - ABC transporter ATP-binding protein USSDB6B, at 4,280,093 to 4,280,923 Xcc-8004.4465.1 Xcc-8004.4466.1: Xcc-8004.4466.1 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,280,926 to 4,281,852 Xcc-8004.4466.1 Position (kb) 4278 4279 4280 4281Strain fitness (log2 ratio) -2 -1 0 1 2at 4278.069 kb on + strand, within Xcc-8004.4463.1at 4278.069 kb on + strand, within Xcc-8004.4463.1at 4278.069 kb on + strand, within Xcc-8004.4463.1at 4278.069 kb on + strand, within Xcc-8004.4463.1at 4278.069 kb on + strand, within Xcc-8004.4463.1at 4278.070 kb on - strand, within Xcc-8004.4463.1at 4278.108 kb on + strand, within Xcc-8004.4463.1at 4278.109 kb on - strand, within Xcc-8004.4463.1at 4278.109 kb on - strand, within Xcc-8004.4463.1at 4278.218 kb on + strand, within Xcc-8004.4463.1at 4278.218 kb on + strand, within Xcc-8004.4463.1at 4278.218 kb on + strand, within Xcc-8004.4463.1at 4278.218 kb on + strand, within Xcc-8004.4463.1at 4278.399 kb on + strand, within Xcc-8004.4463.1at 4278.399 kb on + strand, within Xcc-8004.4463.1at 4278.399 kb on + strand, within Xcc-8004.4463.1at 4278.399 kb on + strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.400 kb on - strand, within Xcc-8004.4463.1at 4278.434 kb on + strand, within Xcc-8004.4463.1at 4278.434 kb on + strand, within Xcc-8004.4463.1at 4278.434 kb on + strand, within Xcc-8004.4463.1at 4278.435 kb on - strand, within Xcc-8004.4463.1at 4278.435 kb on - strand, within Xcc-8004.4463.1at 4278.456 kb on - strand, within Xcc-8004.4463.1at 4278.456 kb on - strand, within Xcc-8004.4463.1at 4278.456 kb on - strand, within Xcc-8004.4463.1at 4278.638 kb on + strand, within Xcc-8004.4463.1at 4278.638 kb on + strand, within Xcc-8004.4463.1at 4278.639 kb on - strand, within Xcc-8004.4463.1at 4278.639 kb on - strand, within Xcc-8004.4463.1at 4278.689 kb on + strandat 4278.689 kb on + strandat 4278.690 kb on - strandat 4278.779 kb on + strandat 4278.779 kb on + strandat 4278.779 kb on + strandat 4278.779 kb on + strandat 4278.779 kb on + strandat 4278.780 kb on - strandat 4278.780 kb on - strandat 4278.780 kb on - strandat 4278.839 kb on + strandat 4278.839 kb on + strandat 4278.839 kb on + strandat 4278.840 kb on - strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.871 kb on + strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.872 kb on - strandat 4278.923 kb on + strandat 4278.923 kb on + strandat 4278.923 kb on + strandat 4278.924 kb on - strandat 4278.924 kb on - strandat 4278.924 kb on - strandat 4278.924 kb on - strandat 4278.924 kb on - strandat 4278.924 kb on - strandat 4278.953 kb on + strandat 4279.076 kb on + strand, within Xcc-8004.4464.1at 4279.415 kb on - strand, within Xcc-8004.4464.1at 4279.415 kb on - strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.480 kb on + strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.481 kb on - strand, within Xcc-8004.4464.1at 4279.526 kb on + strand, within Xcc-8004.4464.1at 4279.526 kb on + strand, within Xcc-8004.4464.1at 4279.526 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.529 kb on + strand, within Xcc-8004.4464.1at 4279.530 kb on - strand, within Xcc-8004.4464.1at 4279.530 kb on - strand, within Xcc-8004.4464.1at 4279.539 kb on + strand, within Xcc-8004.4464.1at 4279.539 kb on + strand, within Xcc-8004.4464.1at 4279.540 kb on - strand, within Xcc-8004.4464.1at 4279.761 kb on + strand, within Xcc-8004.4464.1at 4279.762 kb on - strand, within Xcc-8004.4464.1at 4279.777 kb on + strand, within Xcc-8004.4464.1at 4279.777 kb on + strand, within Xcc-8004.4464.1at 4279.778 kb on - strand, within Xcc-8004.4464.1at 4279.778 kb on - strand, within Xcc-8004.4464.1at 4279.778 kb on - strand, within Xcc-8004.4464.1at 4279.778 kb on - strand, within Xcc-8004.4464.1at 4279.778 kb on - strand, within Xcc-8004.4464.1at 4280.489 kb on + strand, within Xcc-8004.4465.1at 4280.489 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.628 kb on + strand, within Xcc-8004.4465.1at 4280.629 kb on - strand, within Xcc-8004.4465.1at 4280.629 kb on - strand, within Xcc-8004.4465.1at 4280.629 kb on - strand, within Xcc-8004.4465.1at 4280.629 kb on - strand, within Xcc-8004.4465.1at 4280.749 kb on + strand, within Xcc-8004.4465.1at 4280.749 kb on + strand, within Xcc-8004.4465.1at 4280.756 kb on + strand, within Xcc-8004.4465.1at 4280.757 kb on - strand, within Xcc-8004.4465.1at 4280.757 kb on - strand, within Xcc-8004.4465.1at 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.944 kb on + strandat 4280.945 kb on - strandat 4280.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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4,278,069 + Xcc-8004.4463.1 0.45 -0.1
4,278,069 + Xcc-8004.4463.1 0.45 -0.1
4,278,069 + Xcc-8004.4463.1 0.45 +0.4
4,278,069 + Xcc-8004.4463.1 0.45 -0.2
4,278,069 + Xcc-8004.4463.1 0.45 -0.5
4,278,070 - Xcc-8004.4463.1 0.45 -1.2
4,278,108 + Xcc-8004.4463.1 0.47 -1.8
4,278,109 - Xcc-8004.4463.1 0.48 -0.1
4,278,109 - Xcc-8004.4463.1 0.48 +0.5
4,278,218 + Xcc-8004.4463.1 0.56 +0.1
4,278,218 + Xcc-8004.4463.1 0.56 -2.3
4,278,218 + Xcc-8004.4463.1 0.56 -0.9
4,278,218 + Xcc-8004.4463.1 0.56 -0.4
4,278,399 + Xcc-8004.4463.1 0.69 -0.1
4,278,399 + Xcc-8004.4463.1 0.69 -0.0
4,278,399 + Xcc-8004.4463.1 0.69 +0.2
4,278,399 + Xcc-8004.4463.1 0.69 -1.8
4,278,400 - Xcc-8004.4463.1 0.69 -1.3
4,278,400 - Xcc-8004.4463.1 0.69 +0.2
4,278,400 - Xcc-8004.4463.1 0.69 -1.7
4,278,400 - Xcc-8004.4463.1 0.69 -0.8
4,278,400 - Xcc-8004.4463.1 0.69 +0.6
4,278,400 - Xcc-8004.4463.1 0.69 -0.5
4,278,434 + Xcc-8004.4463.1 0.72 +0.0
4,278,434 + Xcc-8004.4463.1 0.72 -0.5
4,278,434 + Xcc-8004.4463.1 0.72 -1.4
4,278,435 - Xcc-8004.4463.1 0.72 -2.1
4,278,435 - Xcc-8004.4463.1 0.72 +1.5
4,278,456 - Xcc-8004.4463.1 0.73 -0.3
4,278,456 - Xcc-8004.4463.1 0.73 -0.0
4,278,456 - Xcc-8004.4463.1 0.73 +0.1
4,278,638 + Xcc-8004.4463.1 0.87 -1.4
4,278,638 + Xcc-8004.4463.1 0.87 +0.1
4,278,639 - Xcc-8004.4463.1 0.87 -0.9
4,278,639 - Xcc-8004.4463.1 0.87 +0.1
4,278,689 + -0.4
4,278,689 + -0.2
4,278,690 - +0.2
4,278,779 + +1.3
4,278,779 + +0.7
4,278,779 + +0.6
4,278,779 + +0.3
4,278,779 + -0.3
4,278,780 - +1.1
4,278,780 - +1.1
4,278,780 - -0.0
4,278,839 + -0.9
4,278,839 + -0.0
4,278,839 + -0.4
4,278,840 - -0.3
4,278,871 + -1.8
4,278,871 + +0.7
4,278,871 + +1.0
4,278,871 + -0.7
4,278,871 + -0.5
4,278,871 + -0.3
4,278,871 + +0.1
4,278,871 + -0.4
4,278,871 + +0.1
4,278,871 + -1.1
4,278,871 + -0.6
4,278,871 + -0.3
4,278,871 + -1.3
4,278,872 - -2.6
4,278,872 - +0.2
4,278,872 - +0.0
4,278,872 - -1.3
4,278,872 - +1.6
4,278,872 - +0.7
4,278,872 - +0.7
4,278,872 - +0.3
4,278,872 - -0.3
4,278,872 - +0.0
4,278,923 + -2.4
4,278,923 + +0.7
4,278,923 + -1.1
4,278,924 - -0.4
4,278,924 - -0.4
4,278,924 - -0.2
4,278,924 - -1.1
4,278,924 - -0.6
4,278,924 - -0.9
4,278,953 + +0.7
4,279,076 + Xcc-8004.4464.1 0.16 -2.5
4,279,415 - Xcc-8004.4464.1 0.46 -0.3
4,279,415 - Xcc-8004.4464.1 0.46 +0.0
4,279,480 + Xcc-8004.4464.1 0.52 -2.1
4,279,480 + Xcc-8004.4464.1 0.52 -1.0
4,279,480 + Xcc-8004.4464.1 0.52 +0.3
4,279,480 + Xcc-8004.4464.1 0.52 -1.0
4,279,480 + Xcc-8004.4464.1 0.52 -0.3
4,279,480 + Xcc-8004.4464.1 0.52 -0.4
4,279,480 + Xcc-8004.4464.1 0.52 +0.7
4,279,480 + Xcc-8004.4464.1 0.52 -0.4
4,279,481 - Xcc-8004.4464.1 0.52 +0.7
4,279,481 - Xcc-8004.4464.1 0.52 -1.6
4,279,481 - Xcc-8004.4464.1 0.52 +0.0
4,279,481 - Xcc-8004.4464.1 0.52 -0.9
4,279,481 - Xcc-8004.4464.1 0.52 -0.5
4,279,481 - Xcc-8004.4464.1 0.52 -1.3
4,279,481 - Xcc-8004.4464.1 0.52 +0.7
4,279,481 - Xcc-8004.4464.1 0.52 -1.3
4,279,481 - Xcc-8004.4464.1 0.52 +0.7
4,279,481 - Xcc-8004.4464.1 0.52 +0.4
4,279,481 - Xcc-8004.4464.1 0.52 -0.6
4,279,481 - Xcc-8004.4464.1 0.52 +0.7
4,279,526 + Xcc-8004.4464.1 0.56 -0.1
4,279,526 + Xcc-8004.4464.1 0.56 -2.0
4,279,526 + Xcc-8004.4464.1 0.56 -0.6
4,279,529 + Xcc-8004.4464.1 0.57 +0.9
4,279,529 + Xcc-8004.4464.1 0.57 -0.4
4,279,529 + Xcc-8004.4464.1 0.57 +1.1
4,279,529 + Xcc-8004.4464.1 0.57 -0.3
4,279,529 + Xcc-8004.4464.1 0.57 -0.5
4,279,529 + Xcc-8004.4464.1 0.57 +0.4
4,279,529 + Xcc-8004.4464.1 0.57 -0.2
4,279,529 + Xcc-8004.4464.1 0.57 +0.1
4,279,530 - Xcc-8004.4464.1 0.57 +0.1
4,279,530 - Xcc-8004.4464.1 0.57 -0.6
4,279,539 + Xcc-8004.4464.1 0.58 +0.7
4,279,539 + Xcc-8004.4464.1 0.58 -1.6
4,279,540 - Xcc-8004.4464.1 0.58 -1.6
4,279,761 + Xcc-8004.4464.1 0.78 -1.0
4,279,762 - Xcc-8004.4464.1 0.78 -1.0
4,279,777 + Xcc-8004.4464.1 0.79 +0.1
4,279,777 + Xcc-8004.4464.1 0.79 -1.3
4,279,778 - Xcc-8004.4464.1 0.79 -2.1
4,279,778 - Xcc-8004.4464.1 0.79 -0.1
4,279,778 - Xcc-8004.4464.1 0.79 -2.5
4,279,778 - Xcc-8004.4464.1 0.79 -0.9
4,279,778 - Xcc-8004.4464.1 0.79 -0.1
4,280,489 + Xcc-8004.4465.1 0.48 +0.2
4,280,489 + Xcc-8004.4465.1 0.48 -1.2
4,280,628 + Xcc-8004.4465.1 0.64 -0.3
4,280,628 + Xcc-8004.4465.1 0.64 +0.4
4,280,628 + Xcc-8004.4465.1 0.64 -1.3
4,280,628 + Xcc-8004.4465.1 0.64 +0.4
4,280,628 + Xcc-8004.4465.1 0.64 -0.5
4,280,628 + Xcc-8004.4465.1 0.64 -0.2
4,280,629 - Xcc-8004.4465.1 0.65 +2.7
4,280,629 - Xcc-8004.4465.1 0.65 -1.7
4,280,629 - Xcc-8004.4465.1 0.65 -1.8
4,280,629 - Xcc-8004.4465.1 0.65 -1.6
4,280,749 + Xcc-8004.4465.1 0.79 -0.3
4,280,749 + Xcc-8004.4465.1 0.79 -2.1
4,280,756 + Xcc-8004.4465.1 0.80 -0.4
4,280,757 - Xcc-8004.4465.1 0.80 -0.4
4,280,757 - Xcc-8004.4465.1 0.80 -1.8
4,280,944 + +0.5
4,280,944 + -1.7
4,280,944 + -0.9
4,280,944 + -0.6
4,280,944 + +0.5
4,280,945 - -0.9
4,280,945 - +0.4

Or see this region's nucleotide sequence