Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4455.1 and Xcc-8004.4456.1 overlap by 4 nucleotides Xcc-8004.4456.1 and Xcc-8004.4457.1 overlap by 4 nucleotides Xcc-8004.4457.1 and Xcc-8004.4458.1 are separated by 144 nucleotides Xcc-8004.4458.1 and Xcc-8004.4459.1 are separated by 113 nucleotides
Xcc-8004.4455.1: Xcc-8004.4455.1 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 4,272,606 to 4,273,088
Xcc-8004.4455.1
Xcc-8004.4456.1: Xcc-8004.4456.1 - FIG01209676: hypothetical protein, at 4,273,085 to 4,273,552
Xcc-8004.4456.1
Xcc-8004.4457.1: Xcc-8004.4457.1 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 4,273,549 to 4,274,313
Xcc-8004.4457.1
Xcc-8004.4458.1: Xcc-8004.4458.1 - FIG01213248: hypothetical protein, at 4,274,458 to 4,274,856
Xcc-8004.4458.1
Xcc-8004.4459.1: Xcc-8004.4459.1 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 4,274,970 to 4,276,664
Xcc-8004.4459.1
Position (kb) 4273
4274
4275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4272.677 kb on - strand, within Xcc-8004.4455.1 at 4272.677 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.905 kb on - strand, within Xcc-8004.4455.1 at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.806 kb on - strand, within Xcc-8004.4457.1 at 4273.974 kb on - strand, within Xcc-8004.4457.1 at 4273.974 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.103 kb on - strand, within Xcc-8004.4457.1 at 4274.103 kb on - strand, within Xcc-8004.4457.1 at 4274.103 kb on - strand, within Xcc-8004.4457.1 at 4274.103 kb on - strand, within Xcc-8004.4457.1 at 4274.283 kb on - strand at 4274.283 kb on - strand at 4274.283 kb on - strand at 4274.283 kb on - strand at 4274.283 kb on - strand at 4274.283 kb on - strand at 4274.333 kb on + strand at 4274.445 kb on + strand at 4274.445 kb on + strand at 4274.445 kb on + strand at 4274.445 kb on + strand at 4274.445 kb on + strand at 4274.446 kb on - strand at 4274.446 kb on - strand at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.525 kb on + strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.526 kb on - strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.527 kb on + strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.528 kb on - strand, within Xcc-8004.4458.1 at 4274.560 kb on + strand, within Xcc-8004.4458.1 at 4274.560 kb on + strand, within Xcc-8004.4458.1 at 4274.561 kb on - strand, within Xcc-8004.4458.1 at 4274.561 kb on - strand, within Xcc-8004.4458.1 at 4274.561 kb on - strand, within Xcc-8004.4458.1 at 4274.594 kb on - strand, within Xcc-8004.4458.1 at 4274.594 kb on - strand, within Xcc-8004.4458.1 at 4274.818 kb on + strand at 4274.818 kb on + strand at 4274.819 kb on - strand at 4274.819 kb on - strand at 4274.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,272,677 - Xcc-8004.4455.1 0.15 +0.5 4,272,677 - Xcc-8004.4455.1 0.15 -0.5 4,272,722 - Xcc-8004.4455.1 0.24 +0.1 4,272,722 - Xcc-8004.4455.1 0.24 -0.9 4,272,722 - Xcc-8004.4455.1 0.24 -0.7 4,272,722 - Xcc-8004.4455.1 0.24 +0.2 4,272,722 - Xcc-8004.4455.1 0.24 -0.3 4,272,905 - Xcc-8004.4455.1 0.62 -0.5 4,273,614 - -3.5 4,273,614 - -1.5 4,273,614 - +0.4 4,273,614 - -0.3 4,273,614 - -2.7 4,273,806 - Xcc-8004.4457.1 0.34 -2.7 4,273,974 - Xcc-8004.4457.1 0.56 -1.3 4,273,974 - Xcc-8004.4457.1 0.56 -1.3 4,274,049 - Xcc-8004.4457.1 0.65 -1.6 4,274,049 - Xcc-8004.4457.1 0.65 -0.3 4,274,049 - Xcc-8004.4457.1 0.65 -2.5 4,274,049 - Xcc-8004.4457.1 0.65 -2.1 4,274,049 - Xcc-8004.4457.1 0.65 -2.2 4,274,049 - Xcc-8004.4457.1 0.65 -1.3 4,274,049 - Xcc-8004.4457.1 0.65 -2.5 4,274,049 - Xcc-8004.4457.1 0.65 -0.3 4,274,103 - Xcc-8004.4457.1 0.72 -1.3 4,274,103 - Xcc-8004.4457.1 0.72 -1.9 4,274,103 - Xcc-8004.4457.1 0.72 -2.4 4,274,103 - Xcc-8004.4457.1 0.72 -2.1 4,274,283 - -0.1 4,274,283 - -2.6 4,274,283 - -3.5 4,274,283 - +2.3 4,274,283 - +1.7 4,274,283 - -0.4 4,274,333 + -0.3 4,274,445 + -0.9 4,274,445 + -0.3 4,274,445 + -1.4 4,274,445 + -0.6 4,274,445 + +0.4 4,274,446 - +0.1 4,274,446 - +2.3 4,274,525 + Xcc-8004.4458.1 0.17 -1.3 4,274,525 + Xcc-8004.4458.1 0.17 -0.2 4,274,525 + Xcc-8004.4458.1 0.17 +0.6 4,274,525 + Xcc-8004.4458.1 0.17 +1.1 4,274,525 + Xcc-8004.4458.1 0.17 -0.3 4,274,525 + Xcc-8004.4458.1 0.17 -0.6 4,274,525 + Xcc-8004.4458.1 0.17 +0.7 4,274,526 - Xcc-8004.4458.1 0.17 +0.1 4,274,526 - Xcc-8004.4458.1 0.17 +1.0 4,274,526 - Xcc-8004.4458.1 0.17 -1.1 4,274,526 - Xcc-8004.4458.1 0.17 -0.9 4,274,526 - Xcc-8004.4458.1 0.17 -0.9 4,274,526 - Xcc-8004.4458.1 0.17 -0.1 4,274,526 - Xcc-8004.4458.1 0.17 +0.7 4,274,526 - Xcc-8004.4458.1 0.17 -0.3 4,274,526 - Xcc-8004.4458.1 0.17 -0.6 4,274,526 - Xcc-8004.4458.1 0.17 -1.7 4,274,526 - Xcc-8004.4458.1 0.17 -0.3 4,274,526 - Xcc-8004.4458.1 0.17 -0.3 4,274,526 - Xcc-8004.4458.1 0.17 -0.6 4,274,527 + Xcc-8004.4458.1 0.17 -0.7 4,274,527 + Xcc-8004.4458.1 0.17 +1.7 4,274,527 + Xcc-8004.4458.1 0.17 +1.1 4,274,527 + Xcc-8004.4458.1 0.17 -0.2 4,274,527 + Xcc-8004.4458.1 0.17 -0.3 4,274,527 + Xcc-8004.4458.1 0.17 -0.1 4,274,527 + Xcc-8004.4458.1 0.17 -0.7 4,274,527 + Xcc-8004.4458.1 0.17 -1.2 4,274,527 + Xcc-8004.4458.1 0.17 -0.3 4,274,527 + Xcc-8004.4458.1 0.17 +0.8 4,274,527 + Xcc-8004.4458.1 0.17 +0.1 4,274,528 - Xcc-8004.4458.1 0.18 -1.5 4,274,528 - Xcc-8004.4458.1 0.18 +0.9 4,274,528 - Xcc-8004.4458.1 0.18 +0.4 4,274,528 - Xcc-8004.4458.1 0.18 +0.7 4,274,528 - Xcc-8004.4458.1 0.18 -0.3 4,274,528 - Xcc-8004.4458.1 0.18 +0.8 4,274,528 - Xcc-8004.4458.1 0.18 +0.3 4,274,528 - Xcc-8004.4458.1 0.18 -1.9 4,274,560 + Xcc-8004.4458.1 0.26 -1.1 4,274,560 + Xcc-8004.4458.1 0.26 -0.4 4,274,561 - Xcc-8004.4458.1 0.26 -0.1 4,274,561 - Xcc-8004.4458.1 0.26 +0.5 4,274,561 - Xcc-8004.4458.1 0.26 +0.0 4,274,594 - Xcc-8004.4458.1 0.34 +1.1 4,274,594 - Xcc-8004.4458.1 0.34 -0.2 4,274,818 + +0.0 4,274,818 + +1.2 4,274,819 - +0.5 4,274,819 - +0.2 4,274,819 - -1.6
Or see this region's nucleotide sequence