Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4339.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4337.1 and Xcc-8004.4338.1 are separated by 240 nucleotidesXcc-8004.4338.1 and Xcc-8004.4339.1 overlap by 14 nucleotidesXcc-8004.4339.1 and Xcc-8004.4340.1 overlap by 4 nucleotides Xcc-8004.4337.1: Xcc-8004.4337.1 - FIG01210643: hypothetical protein, at 4,154,714 to 4,155,433 Xcc-8004.4337.1 Xcc-8004.4338.1: Xcc-8004.4338.1 - hypothetical protein, at 4,155,674 to 4,155,784 Xcc-8004.4338.1 Xcc-8004.4339.1: Xcc-8004.4339.1 - FIG01211792: hypothetical protein, at 4,155,771 to 4,156,208 Xcc-8004.4339.1 Xcc-8004.4340.1: Xcc-8004.4340.1 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein, at 4,156,205 to 4,157,113 Xcc-8004.4340.1 Position (kb) 4155 4156 4157Strain fitness (log2 ratio) -2 -1 0 1at 4154.811 kb on + strand, within Xcc-8004.4337.1at 4154.812 kb on - strand, within Xcc-8004.4337.1at 4154.819 kb on + strand, within Xcc-8004.4337.1at 4154.820 kb on - strand, within Xcc-8004.4337.1at 4154.964 kb on + strand, within Xcc-8004.4337.1at 4154.965 kb on - strand, within Xcc-8004.4337.1at 4155.020 kb on + strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.511 kb on + strandat 4155.675 kb on + strandat 4155.728 kb on + strand, within Xcc-8004.4338.1at 4155.728 kb on + strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.768 kb on + strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4156.007 kb on - strand, within Xcc-8004.4339.1at 4156.007 kb on - strand, within Xcc-8004.4339.1at 4156.019 kb on - strand, within Xcc-8004.4339.1at 4156.019 kb on - strand, within Xcc-8004.4339.1at 4156.080 kb on - strand, within Xcc-8004.4339.1at 4156.300 kb on - strand, within Xcc-8004.4340.1at 4156.746 kb on + strand, within Xcc-8004.4340.1at 4156.746 kb on + strand, within Xcc-8004.4340.1at 4156.803 kb on + strand, within Xcc-8004.4340.1at 4156.917 kb on + strand, within Xcc-8004.4340.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
remove
4,154,811 + Xcc-8004.4337.1 0.13 +0.5
4,154,812 - Xcc-8004.4337.1 0.14 +1.1
4,154,819 + Xcc-8004.4337.1 0.15 -0.2
4,154,820 - Xcc-8004.4337.1 0.15 +0.5
4,154,964 + Xcc-8004.4337.1 0.35 +0.9
4,154,965 - Xcc-8004.4337.1 0.35 +1.6
4,155,020 + Xcc-8004.4337.1 0.42 -1.2
4,155,021 - Xcc-8004.4337.1 0.43 -0.1
4,155,021 - Xcc-8004.4337.1 0.43 +0.2
4,155,021 - Xcc-8004.4337.1 0.43 -0.2
4,155,021 - Xcc-8004.4337.1 0.43 -0.4
4,155,021 - Xcc-8004.4337.1 0.43 +0.4
4,155,113 + Xcc-8004.4337.1 0.55 -0.4
4,155,113 + Xcc-8004.4337.1 0.55 -0.0
4,155,114 - Xcc-8004.4337.1 0.56 +0.4
4,155,114 - Xcc-8004.4337.1 0.56 -1.1
4,155,210 - Xcc-8004.4337.1 0.69 -1.1
4,155,210 - Xcc-8004.4337.1 0.69 -0.7
4,155,210 - Xcc-8004.4337.1 0.69 +1.3
4,155,407 + -0.2
4,155,407 + -1.4
4,155,408 - +0.4
4,155,408 - +0.3
4,155,408 - -1.0
4,155,432 - -2.6
4,155,432 - +0.3
4,155,432 - +0.5
4,155,432 - +1.6
4,155,511 + -0.3
4,155,675 + -0.3
4,155,728 + Xcc-8004.4338.1 0.49 -0.6
4,155,728 + Xcc-8004.4338.1 0.49 +0.3
4,155,729 - Xcc-8004.4338.1 0.50 +0.7
4,155,729 - Xcc-8004.4338.1 0.50 -1.8
4,155,729 - Xcc-8004.4338.1 0.50 -0.2
4,155,729 - Xcc-8004.4338.1 0.50 -0.3
4,155,729 - Xcc-8004.4338.1 0.50 +0.6
4,155,729 - Xcc-8004.4338.1 0.50 +0.6
4,155,729 - Xcc-8004.4338.1 0.50 +0.3
4,155,729 - Xcc-8004.4338.1 0.50 +0.3
4,155,768 + Xcc-8004.4338.1 0.85 -0.1
4,155,769 - Xcc-8004.4338.1 0.86 +0.0
4,155,769 - Xcc-8004.4338.1 0.86 -0.1
4,155,769 - Xcc-8004.4338.1 0.86 +0.1
4,156,007 - Xcc-8004.4339.1 0.54 +0.0
4,156,007 - Xcc-8004.4339.1 0.54 -1.6
4,156,019 - Xcc-8004.4339.1 0.57 +0.7
4,156,019 - Xcc-8004.4339.1 0.57 -1.1
4,156,080 - Xcc-8004.4339.1 0.71 -0.1
4,156,300 - Xcc-8004.4340.1 0.10 -0.3
4,156,746 + Xcc-8004.4340.1 0.60 +0.3
4,156,746 + Xcc-8004.4340.1 0.60 +0.9
4,156,803 + Xcc-8004.4340.1 0.66 -0.7
4,156,917 + Xcc-8004.4340.1 0.78 -0.3

Or see this region's nucleotide sequence