Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4291.1 and Xcc-8004.4292.1 are separated by 0 nucleotides Xcc-8004.4292.1 and Xcc-8004.4293.1 overlap by 4 nucleotides Xcc-8004.4293.1 and Xcc-8004.4294.1 are separated by 88 nucleotides
Xcc-8004.4291.1: Xcc-8004.4291.1 - Taurine-binding periplasmic protein TauA, at 4,106,907 to 4,107,950
Xcc-8004.4291.1
Xcc-8004.4292.1: Xcc-8004.4292.1 - Taurine transport ATP-binding protein TauB, at 4,107,951 to 4,108,793
Xcc-8004.4292.1
Xcc-8004.4293.1: Xcc-8004.4293.1 - Taurine transport system permease protein TauC, at 4,108,790 to 4,109,671
Xcc-8004.4293.1
Xcc-8004.4294.1: Xcc-8004.4294.1 - membrane protein, putative, at 4,109,760 to 4,110,113
Xcc-8004.4294.1
Position (kb) 4107
4108
4109 Strain fitness (log2 ratio) -1
0
1
2 at 4106.995 kb on + strand at 4107.057 kb on + strand, within Xcc-8004.4291.1 at 4107.057 kb on + strand, within Xcc-8004.4291.1 at 4107.058 kb on - strand, within Xcc-8004.4291.1 at 4107.294 kb on + strand, within Xcc-8004.4291.1 at 4107.295 kb on - strand, within Xcc-8004.4291.1 at 4107.297 kb on + strand, within Xcc-8004.4291.1 at 4107.298 kb on - strand, within Xcc-8004.4291.1 at 4107.298 kb on - strand, within Xcc-8004.4291.1 at 4107.581 kb on + strand, within Xcc-8004.4291.1 at 4107.581 kb on + strand, within Xcc-8004.4291.1 at 4107.636 kb on + strand, within Xcc-8004.4291.1 at 4107.637 kb on - strand, within Xcc-8004.4291.1 at 4107.637 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.912 kb on + strand at 4107.913 kb on - strand at 4108.002 kb on + strand at 4108.288 kb on + strand, within Xcc-8004.4292.1 at 4108.288 kb on + strand, within Xcc-8004.4292.1 at 4108.362 kb on + strand, within Xcc-8004.4292.1 at 4108.842 kb on - strand at 4108.961 kb on + strand, within Xcc-8004.4293.1 at 4108.961 kb on + strand, within Xcc-8004.4293.1 at 4108.961 kb on + strand, within Xcc-8004.4293.1 at 4109.031 kb on - strand, within Xcc-8004.4293.1 at 4109.099 kb on + strand, within Xcc-8004.4293.1 at 4109.099 kb on + strand, within Xcc-8004.4293.1 at 4109.099 kb on + strand, within Xcc-8004.4293.1 at 4109.100 kb on - strand, within Xcc-8004.4293.1 at 4109.100 kb on - strand, within Xcc-8004.4293.1 at 4109.312 kb on + strand, within Xcc-8004.4293.1 at 4109.312 kb on + strand, within Xcc-8004.4293.1 at 4109.312 kb on + strand, within Xcc-8004.4293.1 at 4109.312 kb on + strand, within Xcc-8004.4293.1 at 4109.312 kb on + strand, within Xcc-8004.4293.1 at 4109.313 kb on - strand, within Xcc-8004.4293.1 at 4109.313 kb on - strand, within Xcc-8004.4293.1 at 4109.363 kb on + strand, within Xcc-8004.4293.1 at 4109.364 kb on - strand, within Xcc-8004.4293.1 at 4109.364 kb on - strand, within Xcc-8004.4293.1 at 4109.384 kb on + strand, within Xcc-8004.4293.1 at 4109.384 kb on + strand, within Xcc-8004.4293.1 at 4109.385 kb on - strand, within Xcc-8004.4293.1 at 4109.385 kb on - strand, within Xcc-8004.4293.1 at 4109.385 kb on - strand, within Xcc-8004.4293.1 at 4109.385 kb on - strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.525 kb on + strand, within Xcc-8004.4293.1 at 4109.526 kb on - strand, within Xcc-8004.4293.1 at 4109.526 kb on - strand, within Xcc-8004.4293.1 at 4109.552 kb on + strand, within Xcc-8004.4293.1 at 4109.553 kb on - strand, within Xcc-8004.4293.1 at 4109.566 kb on - strand, within Xcc-8004.4293.1 at 4109.647 kb on - strand at 4109.680 kb on - strand at 4109.724 kb on + strand at 4109.724 kb on + strand at 4109.724 kb on + strand at 4109.724 kb on + strand at 4109.725 kb on - strand at 4109.765 kb on + strand at 4109.784 kb on + strand at 4109.785 kb on - strand at 4109.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,106,995 + +2.3 4,107,057 + Xcc-8004.4291.1 0.14 +0.0 4,107,057 + Xcc-8004.4291.1 0.14 +0.3 4,107,058 - Xcc-8004.4291.1 0.14 +0.3 4,107,294 + Xcc-8004.4291.1 0.37 +0.4 4,107,295 - Xcc-8004.4291.1 0.37 +0.8 4,107,297 + Xcc-8004.4291.1 0.37 -0.6 4,107,298 - Xcc-8004.4291.1 0.37 +0.2 4,107,298 - Xcc-8004.4291.1 0.37 -0.2 4,107,581 + Xcc-8004.4291.1 0.65 +0.2 4,107,581 + Xcc-8004.4291.1 0.65 -0.8 4,107,636 + Xcc-8004.4291.1 0.70 +0.2 4,107,637 - Xcc-8004.4291.1 0.70 -0.8 4,107,637 - Xcc-8004.4291.1 0.70 +0.3 4,107,676 - Xcc-8004.4291.1 0.74 +0.3 4,107,676 - Xcc-8004.4291.1 0.74 +0.6 4,107,676 - Xcc-8004.4291.1 0.74 -0.7 4,107,912 + +0.3 4,107,913 - +0.1 4,108,002 + +0.8 4,108,288 + Xcc-8004.4292.1 0.40 -0.9 4,108,288 + Xcc-8004.4292.1 0.40 -1.2 4,108,362 + Xcc-8004.4292.1 0.49 -1.2 4,108,842 - -0.8 4,108,961 + Xcc-8004.4293.1 0.19 +0.1 4,108,961 + Xcc-8004.4293.1 0.19 +0.2 4,108,961 + Xcc-8004.4293.1 0.19 -0.1 4,109,031 - Xcc-8004.4293.1 0.27 -0.2 4,109,099 + Xcc-8004.4293.1 0.35 -0.6 4,109,099 + Xcc-8004.4293.1 0.35 -1.6 4,109,099 + Xcc-8004.4293.1 0.35 -1.2 4,109,100 - Xcc-8004.4293.1 0.35 +1.3 4,109,100 - Xcc-8004.4293.1 0.35 -0.6 4,109,312 + Xcc-8004.4293.1 0.59 +0.2 4,109,312 + Xcc-8004.4293.1 0.59 +0.3 4,109,312 + Xcc-8004.4293.1 0.59 -0.4 4,109,312 + Xcc-8004.4293.1 0.59 -0.0 4,109,312 + Xcc-8004.4293.1 0.59 -0.6 4,109,313 - Xcc-8004.4293.1 0.59 +1.0 4,109,313 - Xcc-8004.4293.1 0.59 +0.2 4,109,363 + Xcc-8004.4293.1 0.65 -0.5 4,109,364 - Xcc-8004.4293.1 0.65 -1.0 4,109,364 - Xcc-8004.4293.1 0.65 +2.1 4,109,384 + Xcc-8004.4293.1 0.67 +2.3 4,109,384 + Xcc-8004.4293.1 0.67 +0.9 4,109,385 - Xcc-8004.4293.1 0.67 +0.8 4,109,385 - Xcc-8004.4293.1 0.67 +1.0 4,109,385 - Xcc-8004.4293.1 0.67 -1.0 4,109,385 - Xcc-8004.4293.1 0.67 -0.6 4,109,525 + Xcc-8004.4293.1 0.83 +1.1 4,109,525 + Xcc-8004.4293.1 0.83 +0.8 4,109,525 + Xcc-8004.4293.1 0.83 -1.7 4,109,525 + Xcc-8004.4293.1 0.83 +2.3 4,109,525 + Xcc-8004.4293.1 0.83 -0.6 4,109,525 + Xcc-8004.4293.1 0.83 -0.4 4,109,525 + Xcc-8004.4293.1 0.83 +0.0 4,109,526 - Xcc-8004.4293.1 0.83 -0.5 4,109,526 - Xcc-8004.4293.1 0.83 +1.0 4,109,552 + Xcc-8004.4293.1 0.86 -1.7 4,109,553 - Xcc-8004.4293.1 0.87 +0.3 4,109,566 - Xcc-8004.4293.1 0.88 +0.0 4,109,647 - +1.2 4,109,680 - +0.9 4,109,724 + -0.6 4,109,724 + +0.3 4,109,724 + +0.6 4,109,724 + -1.0 4,109,725 - -0.4 4,109,765 + +0.4 4,109,784 + -0.2 4,109,785 - -0.2 4,109,791 - -1.6
Or see this region's nucleotide sequence