Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4285.1 and Xcc-8004.4286.1 are separated by 141 nucleotides Xcc-8004.4286.1 and Xcc-8004.4287.1 are separated by 99 nucleotides Xcc-8004.4287.1 and Xcc-8004.4288.1 overlap by 149 nucleotides
Xcc-8004.4285.1: Xcc-8004.4285.1 - two-component system sensor protein, at 4,099,702 to 4,100,973
Xcc-8004.4285.1
Xcc-8004.4286.1: Xcc-8004.4286.1 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,101,115 to 4,101,828
Xcc-8004.4286.1
Xcc-8004.4287.1: Xcc-8004.4287.1 - Arylesterase precursor (EC 3.1.1.2), at 4,101,928 to 4,102,581
Xcc-8004.4287.1
Xcc-8004.4288.1: Xcc-8004.4288.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,102,433 to 4,103,308
Xcc-8004.4288.1
Position (kb) 4101
4102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4100.221 kb on - strand, within Xcc-8004.4285.1 at 4100.221 kb on - strand, within Xcc-8004.4285.1 at 4100.221 kb on - strand, within Xcc-8004.4285.1 at 4100.526 kb on - strand, within Xcc-8004.4285.1 at 4100.526 kb on - strand, within Xcc-8004.4285.1 at 4100.526 kb on - strand, within Xcc-8004.4285.1 at 4100.526 kb on - strand, within Xcc-8004.4285.1 at 4100.546 kb on + strand, within Xcc-8004.4285.1 at 4100.546 kb on + strand, within Xcc-8004.4285.1 at 4100.546 kb on + strand, within Xcc-8004.4285.1 at 4100.546 kb on + strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.547 kb on - strand, within Xcc-8004.4285.1 at 4100.630 kb on + strand, within Xcc-8004.4285.1 at 4100.630 kb on + strand, within Xcc-8004.4285.1 at 4100.630 kb on + strand, within Xcc-8004.4285.1 at 4100.630 kb on + strand, within Xcc-8004.4285.1 at 4100.631 kb on - strand, within Xcc-8004.4285.1 at 4100.631 kb on - strand, within Xcc-8004.4285.1 at 4100.660 kb on + strand, within Xcc-8004.4285.1 at 4100.660 kb on + strand, within Xcc-8004.4285.1 at 4100.660 kb on + strand, within Xcc-8004.4285.1 at 4100.661 kb on - strand, within Xcc-8004.4285.1 at 4100.759 kb on + strand, within Xcc-8004.4285.1 at 4100.778 kb on + strand, within Xcc-8004.4285.1 at 4100.778 kb on + strand, within Xcc-8004.4285.1 at 4100.778 kb on + strand, within Xcc-8004.4285.1 at 4100.810 kb on + strand, within Xcc-8004.4285.1 at 4100.810 kb on + strand, within Xcc-8004.4285.1 at 4100.811 kb on - strand, within Xcc-8004.4285.1 at 4100.811 kb on - strand, within Xcc-8004.4285.1 at 4100.811 kb on - strand, within Xcc-8004.4285.1 at 4100.850 kb on + strand at 4100.864 kb on + strand at 4100.864 kb on + strand at 4100.865 kb on - strand at 4100.865 kb on - strand at 4100.865 kb on - strand at 4100.888 kb on + strand at 4101.000 kb on + strand at 4101.001 kb on - strand at 4101.001 kb on - strand at 4101.001 kb on - strand at 4101.002 kb on + strand at 4101.002 kb on + strand at 4101.002 kb on + strand at 4101.003 kb on - strand at 4101.003 kb on - strand at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.218 kb on + strand, within Xcc-8004.4286.1 at 4101.219 kb on - strand, within Xcc-8004.4286.1 at 4101.219 kb on - strand, within Xcc-8004.4286.1 at 4101.219 kb on - strand, within Xcc-8004.4286.1 at 4101.509 kb on + strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.719 kb on + strand, within Xcc-8004.4286.1 at 4101.719 kb on + strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.771 kb on + strand at 4101.772 kb on - strand at 4102.076 kb on + strand, within Xcc-8004.4287.1 at 4102.076 kb on + strand, within Xcc-8004.4287.1 at 4102.077 kb on - strand, within Xcc-8004.4287.1 at 4102.077 kb on - strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.559 kb on + strand at 4102.560 kb on - strand at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,100,221 - Xcc-8004.4285.1 0.41 +0.1 4,100,221 - Xcc-8004.4285.1 0.41 +0.9 4,100,221 - Xcc-8004.4285.1 0.41 +0.8 4,100,526 - Xcc-8004.4285.1 0.65 -0.6 4,100,526 - Xcc-8004.4285.1 0.65 -1.0 4,100,526 - Xcc-8004.4285.1 0.65 +2.1 4,100,526 - Xcc-8004.4285.1 0.65 +1.8 4,100,546 + Xcc-8004.4285.1 0.66 +1.2 4,100,546 + Xcc-8004.4285.1 0.66 -0.8 4,100,546 + Xcc-8004.4285.1 0.66 +0.1 4,100,546 + Xcc-8004.4285.1 0.66 -0.7 4,100,547 - Xcc-8004.4285.1 0.66 +0.8 4,100,547 - Xcc-8004.4285.1 0.66 +0.3 4,100,547 - Xcc-8004.4285.1 0.66 +0.5 4,100,547 - Xcc-8004.4285.1 0.66 -1.2 4,100,547 - Xcc-8004.4285.1 0.66 -1.0 4,100,547 - Xcc-8004.4285.1 0.66 +0.5 4,100,547 - Xcc-8004.4285.1 0.66 +0.9 4,100,630 + Xcc-8004.4285.1 0.73 -0.3 4,100,630 + Xcc-8004.4285.1 0.73 -0.2 4,100,630 + Xcc-8004.4285.1 0.73 +0.4 4,100,630 + Xcc-8004.4285.1 0.73 +0.8 4,100,631 - Xcc-8004.4285.1 0.73 +0.9 4,100,631 - Xcc-8004.4285.1 0.73 -1.0 4,100,660 + Xcc-8004.4285.1 0.75 +0.6 4,100,660 + Xcc-8004.4285.1 0.75 +1.2 4,100,660 + Xcc-8004.4285.1 0.75 +0.4 4,100,661 - Xcc-8004.4285.1 0.75 +0.8 4,100,759 + Xcc-8004.4285.1 0.83 +0.8 4,100,778 + Xcc-8004.4285.1 0.85 -0.7 4,100,778 + Xcc-8004.4285.1 0.85 +1.3 4,100,778 + Xcc-8004.4285.1 0.85 +0.5 4,100,810 + Xcc-8004.4285.1 0.87 +0.3 4,100,810 + Xcc-8004.4285.1 0.87 +0.6 4,100,811 - Xcc-8004.4285.1 0.87 -0.8 4,100,811 - Xcc-8004.4285.1 0.87 -1.4 4,100,811 - Xcc-8004.4285.1 0.87 +0.9 4,100,850 + +0.5 4,100,864 + -0.2 4,100,864 + +0.8 4,100,865 - +0.2 4,100,865 - -0.6 4,100,865 - -0.8 4,100,888 + -0.4 4,101,000 + -0.9 4,101,001 - -0.8 4,101,001 - +3.1 4,101,001 - -2.9 4,101,002 + -0.4 4,101,002 + -0.2 4,101,002 + -0.0 4,101,003 - -1.0 4,101,003 - -0.2 4,101,218 + Xcc-8004.4286.1 0.14 -1.6 4,101,218 + Xcc-8004.4286.1 0.14 -2.7 4,101,218 + Xcc-8004.4286.1 0.14 +0.8 4,101,218 + Xcc-8004.4286.1 0.14 -2.4 4,101,218 + Xcc-8004.4286.1 0.14 -2.5 4,101,218 + Xcc-8004.4286.1 0.14 -2.0 4,101,218 + Xcc-8004.4286.1 0.14 -1.8 4,101,219 - Xcc-8004.4286.1 0.15 -0.8 4,101,219 - Xcc-8004.4286.1 0.15 -1.8 4,101,219 - Xcc-8004.4286.1 0.15 -2.6 4,101,509 + Xcc-8004.4286.1 0.55 +0.6 4,101,510 - Xcc-8004.4286.1 0.55 -0.8 4,101,510 - Xcc-8004.4286.1 0.55 -2.0 4,101,510 - Xcc-8004.4286.1 0.55 -1.6 4,101,510 - Xcc-8004.4286.1 0.55 -3.8 4,101,510 - Xcc-8004.4286.1 0.55 -3.1 4,101,671 + Xcc-8004.4286.1 0.78 -4.1 4,101,671 + Xcc-8004.4286.1 0.78 -1.6 4,101,671 + Xcc-8004.4286.1 0.78 -1.6 4,101,671 + Xcc-8004.4286.1 0.78 -3.2 4,101,671 + Xcc-8004.4286.1 0.78 -1.2 4,101,671 + Xcc-8004.4286.1 0.78 -2.8 4,101,671 + Xcc-8004.4286.1 0.78 -1.8 4,101,671 + Xcc-8004.4286.1 0.78 +0.8 4,101,671 + Xcc-8004.4286.1 0.78 +0.8 4,101,671 + Xcc-8004.4286.1 0.78 -3.2 4,101,671 + Xcc-8004.4286.1 0.78 +0.2 4,101,671 + Xcc-8004.4286.1 0.78 -4.2 4,101,672 - Xcc-8004.4286.1 0.78 -2.8 4,101,672 - Xcc-8004.4286.1 0.78 -3.1 4,101,672 - Xcc-8004.4286.1 0.78 -0.9 4,101,672 - Xcc-8004.4286.1 0.78 -2.0 4,101,672 - Xcc-8004.4286.1 0.78 -1.8 4,101,719 + Xcc-8004.4286.1 0.85 -1.6 4,101,719 + Xcc-8004.4286.1 0.85 -0.2 4,101,720 - Xcc-8004.4286.1 0.85 -4.2 4,101,720 - Xcc-8004.4286.1 0.85 -2.4 4,101,720 - Xcc-8004.4286.1 0.85 +0.8 4,101,720 - Xcc-8004.4286.1 0.85 -1.6 4,101,771 + -0.2 4,101,772 - -1.8 4,102,076 + Xcc-8004.4287.1 0.23 +1.3 4,102,076 + Xcc-8004.4287.1 0.23 -0.1 4,102,077 - Xcc-8004.4287.1 0.23 -0.1 4,102,077 - Xcc-8004.4287.1 0.23 -0.4 4,102,097 + Xcc-8004.4287.1 0.26 +0.5 4,102,097 + Xcc-8004.4287.1 0.26 +1.4 4,102,097 + Xcc-8004.4287.1 0.26 +0.6 4,102,097 + Xcc-8004.4287.1 0.26 +0.2 4,102,097 + Xcc-8004.4287.1 0.26 -0.8 4,102,097 + Xcc-8004.4287.1 0.26 +1.3 4,102,097 + Xcc-8004.4287.1 0.26 -0.2 4,102,098 - Xcc-8004.4287.1 0.26 +0.5 4,102,098 - Xcc-8004.4287.1 0.26 -0.0 4,102,098 - Xcc-8004.4287.1 0.26 -2.0 4,102,098 - Xcc-8004.4287.1 0.26 -1.1 4,102,098 - Xcc-8004.4287.1 0.26 +1.6 4,102,098 - Xcc-8004.4287.1 0.26 -0.3 4,102,098 - Xcc-8004.4287.1 0.26 +0.3 4,102,098 - Xcc-8004.4287.1 0.26 -1.4 4,102,098 - Xcc-8004.4287.1 0.26 +0.2 4,102,098 - Xcc-8004.4287.1 0.26 +0.9 4,102,133 + Xcc-8004.4287.1 0.31 -1.1 4,102,133 + Xcc-8004.4287.1 0.31 -1.2 4,102,133 + Xcc-8004.4287.1 0.31 +0.8 4,102,133 + Xcc-8004.4287.1 0.31 -0.8 4,102,134 - Xcc-8004.4287.1 0.31 +0.0 4,102,134 - Xcc-8004.4287.1 0.31 -0.0 4,102,134 - Xcc-8004.4287.1 0.31 -0.6 4,102,134 - Xcc-8004.4287.1 0.31 +0.2 4,102,134 - Xcc-8004.4287.1 0.31 +0.8 4,102,134 - Xcc-8004.4287.1 0.31 -1.6 4,102,559 + -0.7 4,102,560 - -0.7 4,102,729 + Xcc-8004.4288.1 0.34 +1.1 4,102,729 + Xcc-8004.4288.1 0.34 +0.5 4,102,729 + Xcc-8004.4288.1 0.34 -0.8 4,102,729 + Xcc-8004.4288.1 0.34 +0.3 4,102,730 - Xcc-8004.4288.1 0.34 -0.2 4,102,730 - Xcc-8004.4288.1 0.34 +1.8 4,102,730 - Xcc-8004.4288.1 0.34 +0.9 4,102,730 - Xcc-8004.4288.1 0.34 +0.3
Or see this region's nucleotide sequence