Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4076.1 and Xcc-8004.4077.1 are separated by 183 nucleotides Xcc-8004.4077.1 and Xcc-8004.4078.1 are separated by 39 nucleotides Xcc-8004.4078.1 and Xcc-8004.4079.1 are separated by 17 nucleotides Xcc-8004.4079.1 and Xcc-8004.4080.1 are separated by 171 nucleotides
Xcc-8004.4076.1: Xcc-8004.4076.1 - hypothetical protein, at 3,933,066 to 3,934,334
Xcc-8004.4076.1
Xcc-8004.4077.1: Xcc-8004.4077.1 - putative; ORF located using Glimmer/Genemark, at 3,934,518 to 3,935,066
Xcc-8004.4077.1
Xcc-8004.4078.1: Xcc-8004.4078.1 - putative; ORF located using Glimmer/Genemark, at 3,935,106 to 3,935,681
Xcc-8004.4078.1
Xcc-8004.4079.1: Xcc-8004.4079.1 - hypothetical protein, at 3,935,699 to 3,936,343
Xcc-8004.4079.1
Xcc-8004.4080.1: Xcc-8004.4080.1 - Phospholipase C, at 3,936,515 to 3,938,596
Xcc-8004.4080.1
Position (kb) 3935
3936 Strain fitness (log2 ratio) -2
-1
0
1 at 3934.341 kb on - strand at 3934.531 kb on + strand at 3934.532 kb on - strand at 3934.532 kb on - strand at 3934.532 kb on - strand at 3934.532 kb on - strand at 3934.579 kb on - strand, within Xcc-8004.4077.1 at 3934.579 kb on - strand, within Xcc-8004.4077.1 at 3934.636 kb on + strand, within Xcc-8004.4077.1 at 3934.637 kb on - strand, within Xcc-8004.4077.1 at 3934.637 kb on - strand, within Xcc-8004.4077.1 at 3934.637 kb on - strand, within Xcc-8004.4077.1 at 3934.678 kb on + strand, within Xcc-8004.4077.1 at 3934.678 kb on + strand, within Xcc-8004.4077.1 at 3934.723 kb on + strand, within Xcc-8004.4077.1 at 3934.723 kb on + strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.847 kb on + strand, within Xcc-8004.4077.1 at 3934.848 kb on - strand, within Xcc-8004.4077.1 at 3934.848 kb on - strand, within Xcc-8004.4077.1 at 3935.085 kb on + strand at 3935.085 kb on + strand at 3935.107 kb on + strand at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.260 kb on + strand, within Xcc-8004.4078.1 at 3935.261 kb on - strand, within Xcc-8004.4078.1 at 3935.619 kb on - strand, within Xcc-8004.4078.1 at 3935.700 kb on + strand at 3935.700 kb on + strand at 3935.701 kb on - strand at 3935.702 kb on + strand at 3935.702 kb on + strand at 3935.702 kb on + strand at 3935.703 kb on - strand at 3936.002 kb on + strand, within Xcc-8004.4079.1 at 3936.002 kb on + strand, within Xcc-8004.4079.1 at 3936.003 kb on - strand, within Xcc-8004.4079.1 at 3936.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,934,341 - +1.0 3,934,531 + +0.8 3,934,532 - +1.0 3,934,532 - +0.4 3,934,532 - -0.2 3,934,532 - -2.2 3,934,579 - Xcc-8004.4077.1 0.11 +0.7 3,934,579 - Xcc-8004.4077.1 0.11 -2.2 3,934,636 + Xcc-8004.4077.1 0.21 -0.5 3,934,637 - Xcc-8004.4077.1 0.22 +0.3 3,934,637 - Xcc-8004.4077.1 0.22 +0.1 3,934,637 - Xcc-8004.4077.1 0.22 -1.1 3,934,678 + Xcc-8004.4077.1 0.29 +1.1 3,934,678 + Xcc-8004.4077.1 0.29 -1.6 3,934,723 + Xcc-8004.4077.1 0.37 -0.5 3,934,723 + Xcc-8004.4077.1 0.37 +0.8 3,934,724 - Xcc-8004.4077.1 0.38 -0.3 3,934,724 - Xcc-8004.4077.1 0.38 -0.7 3,934,724 - Xcc-8004.4077.1 0.38 +0.7 3,934,847 + Xcc-8004.4077.1 0.60 +0.5 3,934,848 - Xcc-8004.4077.1 0.60 -0.1 3,934,848 - Xcc-8004.4077.1 0.60 -0.8 3,935,085 + +0.2 3,935,085 + +1.0 3,935,107 + +0.2 3,935,195 - Xcc-8004.4078.1 0.15 -0.6 3,935,195 - Xcc-8004.4078.1 0.15 -0.2 3,935,195 - Xcc-8004.4078.1 0.15 -0.2 3,935,260 + Xcc-8004.4078.1 0.27 -0.8 3,935,261 - Xcc-8004.4078.1 0.27 -0.9 3,935,619 - Xcc-8004.4078.1 0.89 -0.0 3,935,700 + +0.1 3,935,700 + -0.2 3,935,701 - -0.2 3,935,702 + +1.4 3,935,702 + +0.6 3,935,702 + +1.0 3,935,703 - -0.1 3,936,002 + Xcc-8004.4079.1 0.47 +0.4 3,936,002 + Xcc-8004.4079.1 0.47 +1.2 3,936,003 - Xcc-8004.4079.1 0.47 -2.4 3,936,621 + -0.2
Or see this region's nucleotide sequence