Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4025.1 and Xcc-8004.4026.1 are separated by 52 nucleotides Xcc-8004.4026.1 and Xcc-8004.4031.1 are separated by 596 nucleotides
Xcc-8004.4025.1: Xcc-8004.4025.1 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 3,894,630 to 3,895,676
Xcc-8004.4025.1
Xcc-8004.4026.1: Xcc-8004.4026.1 - FIG01209666: hypothetical protein, at 3,895,729 to 3,896,133
Xcc-8004.4026.1
Xcc-8004.4031.1: Xcc-8004.4031.1 - protein phosphatase, at 3,896,730 to 3,897,434
Xcc-8004.4031.1
Position (kb) 3895
3896
3897 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3894.810 kb on + strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1 at 3894.958 kb on - strand, within Xcc-8004.4025.1 at 3894.958 kb on - strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.027 kb on + strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.028 kb on - strand, within Xcc-8004.4025.1 at 3895.336 kb on + strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.516 kb on - strand, within Xcc-8004.4025.1 at 3895.530 kb on + strand, within Xcc-8004.4025.1 at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.679 kb on + strand at 3895.680 kb on - strand at 3895.680 kb on - strand at 3895.757 kb on + strand at 3895.757 kb on + strand at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.776 kb on - strand, within Xcc-8004.4026.1 at 3895.837 kb on - strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.838 kb on + strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.839 kb on - strand, within Xcc-8004.4026.1 at 3895.954 kb on + strand, within Xcc-8004.4026.1 at 3895.955 kb on - strand, within Xcc-8004.4026.1 at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.164 kb on + strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.165 kb on - strand at 3896.170 kb on + strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.171 kb on - strand at 3896.224 kb on + strand at 3896.224 kb on + strand at 3896.224 kb on + strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.225 kb on - strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.313 kb on + strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand at 3896.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,894,810 + Xcc-8004.4025.1 0.17 +0.4 3,894,811 - Xcc-8004.4025.1 0.17 -0.3 3,894,811 - Xcc-8004.4025.1 0.17 -0.4 3,894,958 - Xcc-8004.4025.1 0.31 -0.7 3,894,958 - Xcc-8004.4025.1 0.31 -0.2 3,895,027 + Xcc-8004.4025.1 0.38 +1.0 3,895,027 + Xcc-8004.4025.1 0.38 -0.5 3,895,027 + Xcc-8004.4025.1 0.38 -0.2 3,895,027 + Xcc-8004.4025.1 0.38 -0.2 3,895,027 + Xcc-8004.4025.1 0.38 -0.8 3,895,027 + Xcc-8004.4025.1 0.38 -0.5 3,895,027 + Xcc-8004.4025.1 0.38 +0.3 3,895,027 + Xcc-8004.4025.1 0.38 +0.5 3,895,027 + Xcc-8004.4025.1 0.38 +0.6 3,895,027 + Xcc-8004.4025.1 0.38 +0.3 3,895,027 + Xcc-8004.4025.1 0.38 -1.0 3,895,027 + Xcc-8004.4025.1 0.38 -0.3 3,895,027 + Xcc-8004.4025.1 0.38 +0.8 3,895,027 + Xcc-8004.4025.1 0.38 -0.5 3,895,027 + Xcc-8004.4025.1 0.38 +0.5 3,895,027 + Xcc-8004.4025.1 0.38 +1.1 3,895,027 + Xcc-8004.4025.1 0.38 -0.9 3,895,027 + Xcc-8004.4025.1 0.38 +0.3 3,895,027 + Xcc-8004.4025.1 0.38 +0.8 3,895,027 + Xcc-8004.4025.1 0.38 +0.8 3,895,027 + Xcc-8004.4025.1 0.38 +0.2 3,895,027 + Xcc-8004.4025.1 0.38 +0.4 3,895,027 + Xcc-8004.4025.1 0.38 -1.9 3,895,027 + Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 +0.8 3,895,028 - Xcc-8004.4025.1 0.38 +0.6 3,895,028 - Xcc-8004.4025.1 0.38 -1.7 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 +0.9 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 +1.8 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 +0.6 3,895,028 - Xcc-8004.4025.1 0.38 -1.2 3,895,028 - Xcc-8004.4025.1 0.38 +0.6 3,895,028 - Xcc-8004.4025.1 0.38 -1.4 3,895,028 - Xcc-8004.4025.1 0.38 +0.8 3,895,028 - Xcc-8004.4025.1 0.38 -1.7 3,895,028 - Xcc-8004.4025.1 0.38 -1.8 3,895,028 - Xcc-8004.4025.1 0.38 +1.0 3,895,028 - Xcc-8004.4025.1 0.38 +1.8 3,895,028 - Xcc-8004.4025.1 0.38 -1.3 3,895,028 - Xcc-8004.4025.1 0.38 -0.5 3,895,028 - Xcc-8004.4025.1 0.38 +0.1 3,895,028 - Xcc-8004.4025.1 0.38 +0.3 3,895,028 - Xcc-8004.4025.1 0.38 -2.2 3,895,028 - Xcc-8004.4025.1 0.38 -0.6 3,895,028 - Xcc-8004.4025.1 0.38 +1.1 3,895,028 - Xcc-8004.4025.1 0.38 +0.1 3,895,028 - Xcc-8004.4025.1 0.38 +0.8 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 -0.1 3,895,028 - Xcc-8004.4025.1 0.38 -1.2 3,895,028 - Xcc-8004.4025.1 0.38 -0.8 3,895,028 - Xcc-8004.4025.1 0.38 -0.4 3,895,028 - Xcc-8004.4025.1 0.38 -0.4 3,895,028 - Xcc-8004.4025.1 0.38 -0.2 3,895,028 - Xcc-8004.4025.1 0.38 +1.1 3,895,028 - Xcc-8004.4025.1 0.38 -0.8 3,895,028 - Xcc-8004.4025.1 0.38 +0.1 3,895,028 - Xcc-8004.4025.1 0.38 +0.3 3,895,336 + Xcc-8004.4025.1 0.67 +0.8 3,895,516 - Xcc-8004.4025.1 0.85 -0.5 3,895,516 - Xcc-8004.4025.1 0.85 -1.5 3,895,516 - Xcc-8004.4025.1 0.85 +0.3 3,895,516 - Xcc-8004.4025.1 0.85 +0.3 3,895,530 + Xcc-8004.4025.1 0.86 +0.5 3,895,679 + -0.7 3,895,679 + -0.9 3,895,679 + -2.0 3,895,679 + +0.8 3,895,680 - -1.2 3,895,680 - +0.4 3,895,757 + +1.1 3,895,757 + -1.5 3,895,776 - Xcc-8004.4026.1 0.12 -0.2 3,895,776 - Xcc-8004.4026.1 0.12 -0.4 3,895,776 - Xcc-8004.4026.1 0.12 -0.3 3,895,776 - Xcc-8004.4026.1 0.12 -1.8 3,895,776 - Xcc-8004.4026.1 0.12 +0.8 3,895,837 - Xcc-8004.4026.1 0.27 +0.0 3,895,838 + Xcc-8004.4026.1 0.27 -1.2 3,895,838 + Xcc-8004.4026.1 0.27 -2.3 3,895,838 + Xcc-8004.4026.1 0.27 -0.3 3,895,838 + Xcc-8004.4026.1 0.27 -1.9 3,895,838 + Xcc-8004.4026.1 0.27 -0.5 3,895,838 + Xcc-8004.4026.1 0.27 -0.8 3,895,838 + Xcc-8004.4026.1 0.27 -0.7 3,895,839 - Xcc-8004.4026.1 0.27 -0.1 3,895,839 - Xcc-8004.4026.1 0.27 +0.1 3,895,839 - Xcc-8004.4026.1 0.27 +1.4 3,895,839 - Xcc-8004.4026.1 0.27 -1.5 3,895,839 - Xcc-8004.4026.1 0.27 -0.8 3,895,839 - Xcc-8004.4026.1 0.27 -0.2 3,895,954 + Xcc-8004.4026.1 0.56 +0.3 3,895,955 - Xcc-8004.4026.1 0.56 -1.9 3,896,164 + +0.4 3,896,164 + +0.8 3,896,164 + -1.5 3,896,164 + -1.5 3,896,164 + +0.3 3,896,164 + +0.2 3,896,164 + +0.8 3,896,164 + -0.5 3,896,164 + +0.2 3,896,165 - -1.1 3,896,165 - -0.0 3,896,165 - -1.1 3,896,165 - -1.1 3,896,165 - +3.4 3,896,165 - -0.2 3,896,165 - -1.0 3,896,170 + +1.3 3,896,171 - -0.4 3,896,171 - -0.4 3,896,171 - +0.8 3,896,171 - -0.4 3,896,171 - -0.2 3,896,224 + -0.8 3,896,224 + -1.6 3,896,224 + -0.3 3,896,225 - -0.4 3,896,225 - -0.5 3,896,225 - -0.1 3,896,225 - +1.8 3,896,225 - +0.4 3,896,313 + +1.5 3,896,313 + -0.0 3,896,313 + +0.2 3,896,313 + +0.8 3,896,313 + -0.7 3,896,313 + +0.5 3,896,313 + +0.2 3,896,313 + -0.1 3,896,313 + +1.7 3,896,313 + +0.6 3,896,313 + -0.3 3,896,313 + +1.8 3,896,314 - +1.0 3,896,314 - -0.8 3,896,314 - +0.5 3,896,314 - -0.1 3,896,314 - -0.9 3,896,314 - +0.6 3,896,314 - +0.4 3,896,314 - +0.1 3,896,314 - +0.3 3,896,314 - +0.3
Or see this region's nucleotide sequence