Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3921.1 and Xcc-8004.3922.1 are separated by 9 nucleotides Xcc-8004.3922.1 and Xcc-8004.3923.1 are separated by 24 nucleotides Xcc-8004.3923.1 and Xcc-8004.3924.1 overlap by 4 nucleotides
Xcc-8004.3921.1: Xcc-8004.3921.1 - Alpha-1,2-mannosidase, at 3,795,548 to 3,797,896
Xcc-8004.3921.1
Xcc-8004.3922.1: Xcc-8004.3922.1 - FIG01210602: hypothetical protein, at 3,797,906 to 3,798,781
Xcc-8004.3922.1
Xcc-8004.3923.1: Xcc-8004.3923.1 - Short-chain dehydrogenase/reductase SDR, at 3,798,806 to 3,799,708
Xcc-8004.3923.1
Xcc-8004.3924.1: Xcc-8004.3924.1 - Glucoamylase (EC 3.2.1.3), at 3,799,705 to 3,801,510
Xcc-8004.3924.1
Position (kb) 3798
3799
3800 Strain fitness (log2 ratio) -2
-1
0
1 at 3797.877 kb on - strand at 3798.473 kb on - strand, within Xcc-8004.3922.1 at 3798.531 kb on + strand, within Xcc-8004.3922.1 at 3798.531 kb on + strand, within Xcc-8004.3922.1 at 3798.531 kb on + strand, within Xcc-8004.3922.1 at 3798.532 kb on - strand, within Xcc-8004.3922.1 at 3798.532 kb on - strand, within Xcc-8004.3922.1 at 3798.534 kb on + strand, within Xcc-8004.3922.1 at 3798.535 kb on - strand, within Xcc-8004.3922.1 at 3798.535 kb on - strand, within Xcc-8004.3922.1 at 3798.660 kb on + strand, within Xcc-8004.3922.1 at 3798.660 kb on + strand, within Xcc-8004.3922.1 at 3798.661 kb on - strand, within Xcc-8004.3922.1 at 3798.661 kb on - strand, within Xcc-8004.3922.1 at 3798.828 kb on - strand at 3799.061 kb on + strand, within Xcc-8004.3923.1 at 3799.307 kb on + strand, within Xcc-8004.3923.1 at 3799.392 kb on - strand, within Xcc-8004.3923.1 at 3799.392 kb on - strand, within Xcc-8004.3923.1 at 3799.628 kb on + strand at 3799.628 kb on + strand at 3799.629 kb on - strand at 3799.658 kb on + strand at 3799.658 kb on + strand at 3799.658 kb on + strand at 3799.659 kb on - strand at 3799.659 kb on - strand at 3799.659 kb on - strand at 3800.101 kb on + strand, within Xcc-8004.3924.1 at 3800.102 kb on - strand, within Xcc-8004.3924.1 at 3800.401 kb on + strand, within Xcc-8004.3924.1 at 3800.401 kb on + strand, within Xcc-8004.3924.1 at 3800.401 kb on + strand, within Xcc-8004.3924.1 at 3800.402 kb on - strand, within Xcc-8004.3924.1 at 3800.402 kb on - strand, within Xcc-8004.3924.1 at 3800.402 kb on - strand, within Xcc-8004.3924.1 at 3800.496 kb on + strand, within Xcc-8004.3924.1 at 3800.497 kb on - strand, within Xcc-8004.3924.1 at 3800.540 kb on - strand, within Xcc-8004.3924.1 at 3800.545 kb on + strand, within Xcc-8004.3924.1 at 3800.569 kb on + strand, within Xcc-8004.3924.1 at 3800.570 kb on - strand, within Xcc-8004.3924.1 at 3800.677 kb on + strand, within Xcc-8004.3924.1 at 3800.678 kb on - strand, within Xcc-8004.3924.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,797,877 - -0.1 3,798,473 - Xcc-8004.3922.1 0.65 -0.0 3,798,531 + Xcc-8004.3922.1 0.71 -0.2 3,798,531 + Xcc-8004.3922.1 0.71 +0.1 3,798,531 + Xcc-8004.3922.1 0.71 +0.1 3,798,532 - Xcc-8004.3922.1 0.71 -0.4 3,798,532 - Xcc-8004.3922.1 0.71 -0.7 3,798,534 + Xcc-8004.3922.1 0.72 -0.1 3,798,535 - Xcc-8004.3922.1 0.72 -2.0 3,798,535 - Xcc-8004.3922.1 0.72 -1.0 3,798,660 + Xcc-8004.3922.1 0.86 +0.2 3,798,660 + Xcc-8004.3922.1 0.86 +1.2 3,798,661 - Xcc-8004.3922.1 0.86 -0.2 3,798,661 - Xcc-8004.3922.1 0.86 -0.5 3,798,828 - +0.1 3,799,061 + Xcc-8004.3923.1 0.28 -0.7 3,799,307 + Xcc-8004.3923.1 0.55 -0.9 3,799,392 - Xcc-8004.3923.1 0.65 -1.7 3,799,392 - Xcc-8004.3923.1 0.65 -1.8 3,799,628 + -1.8 3,799,628 + -1.2 3,799,629 - -1.0 3,799,658 + +0.2 3,799,658 + -0.8 3,799,658 + -2.5 3,799,659 - +1.6 3,799,659 - -0.4 3,799,659 - +0.7 3,800,101 + Xcc-8004.3924.1 0.22 +0.2 3,800,102 - Xcc-8004.3924.1 0.22 +0.6 3,800,401 + Xcc-8004.3924.1 0.39 -0.1 3,800,401 + Xcc-8004.3924.1 0.39 -0.3 3,800,401 + Xcc-8004.3924.1 0.39 +1.3 3,800,402 - Xcc-8004.3924.1 0.39 -1.2 3,800,402 - Xcc-8004.3924.1 0.39 -0.3 3,800,402 - Xcc-8004.3924.1 0.39 -0.1 3,800,496 + Xcc-8004.3924.1 0.44 -0.7 3,800,497 - Xcc-8004.3924.1 0.44 +0.5 3,800,540 - Xcc-8004.3924.1 0.46 -0.9 3,800,545 + Xcc-8004.3924.1 0.47 +0.8 3,800,569 + Xcc-8004.3924.1 0.48 +0.8 3,800,570 - Xcc-8004.3924.1 0.48 -1.4 3,800,677 + Xcc-8004.3924.1 0.54 +0.4 3,800,678 - Xcc-8004.3924.1 0.54 -0.3
Or see this region's nucleotide sequence