Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3757.1 and Xcc-8004.3759.1 are separated by 260 nucleotides Xcc-8004.3759.1 and Xcc-8004.3760.1 overlap by 67 nucleotides Xcc-8004.3760.1 and Xcc-8004.3761.1 are separated by 519 nucleotides
Xcc-8004.3757.1: Xcc-8004.3757.1 - Mobile element protein, at 3,628,781 to 3,629,743
Xcc-8004.3757.1
Xcc-8004.3759.1: Xcc-8004.3759.1 - hypothetical protein, at 3,630,004 to 3,630,723
Xcc-8004.3759.1
Xcc-8004.3760.1: Xcc-8004.3760.1 - DNA mismatch repair protein MutS, at 3,630,657 to 3,633,278
Xcc-8004.3760.1
Xcc-8004.3761.1: Xcc-8004.3761.1 - FIG01211233: hypothetical protein, at 3,633,798 to 3,634,412
Xcc-8004.3761.1
Position (kb) 3630
3631
3632
3633
3634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3629.948 kb on + strand at 3629.949 kb on - strand at 3629.985 kb on - strand at 3629.985 kb on - strand at 3630.077 kb on + strand, within Xcc-8004.3759.1 at 3630.098 kb on + strand, within Xcc-8004.3759.1 at 3630.099 kb on - strand, within Xcc-8004.3759.1 at 3630.101 kb on + strand, within Xcc-8004.3759.1 at 3630.102 kb on - strand, within Xcc-8004.3759.1 at 3630.123 kb on - strand, within Xcc-8004.3759.1 at 3630.375 kb on - strand, within Xcc-8004.3759.1 at 3630.793 kb on - strand at 3630.910 kb on - strand at 3630.910 kb on - strand at 3630.910 kb on - strand at 3630.918 kb on + strand at 3630.918 kb on + strand at 3630.918 kb on + strand at 3630.919 kb on - strand at 3631.216 kb on + strand, within Xcc-8004.3760.1 at 3631.216 kb on + strand, within Xcc-8004.3760.1 at 3631.216 kb on + strand, within Xcc-8004.3760.1 at 3631.217 kb on - strand, within Xcc-8004.3760.1 at 3631.217 kb on - strand, within Xcc-8004.3760.1 at 3631.217 kb on - strand, within Xcc-8004.3760.1 at 3631.410 kb on + strand, within Xcc-8004.3760.1 at 3631.410 kb on + strand, within Xcc-8004.3760.1 at 3631.410 kb on + strand, within Xcc-8004.3760.1 at 3631.411 kb on - strand, within Xcc-8004.3760.1 at 3631.411 kb on - strand, within Xcc-8004.3760.1 at 3631.411 kb on - strand, within Xcc-8004.3760.1 at 3631.642 kb on + strand, within Xcc-8004.3760.1 at 3631.869 kb on + strand, within Xcc-8004.3760.1 at 3631.974 kb on + strand, within Xcc-8004.3760.1 at 3632.106 kb on + strand, within Xcc-8004.3760.1 at 3632.107 kb on - strand, within Xcc-8004.3760.1 at 3632.109 kb on + strand, within Xcc-8004.3760.1 at 3632.109 kb on + strand, within Xcc-8004.3760.1 at 3632.109 kb on + strand, within Xcc-8004.3760.1 at 3632.110 kb on - strand, within Xcc-8004.3760.1 at 3632.110 kb on - strand, within Xcc-8004.3760.1 at 3632.110 kb on - strand, within Xcc-8004.3760.1 at 3632.154 kb on + strand, within Xcc-8004.3760.1 at 3632.191 kb on - strand, within Xcc-8004.3760.1 at 3632.272 kb on - strand, within Xcc-8004.3760.1 at 3632.556 kb on + strand, within Xcc-8004.3760.1 at 3632.556 kb on + strand, within Xcc-8004.3760.1 at 3632.557 kb on - strand, within Xcc-8004.3760.1 at 3632.557 kb on - strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.604 kb on + strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.605 kb on - strand, within Xcc-8004.3760.1 at 3632.608 kb on + strand, within Xcc-8004.3760.1 at 3632.608 kb on + strand, within Xcc-8004.3760.1 at 3632.609 kb on - strand, within Xcc-8004.3760.1 at 3632.724 kb on + strand, within Xcc-8004.3760.1 at 3632.724 kb on + strand, within Xcc-8004.3760.1 at 3632.793 kb on + strand, within Xcc-8004.3760.1 at 3632.793 kb on + strand, within Xcc-8004.3760.1 at 3632.793 kb on + strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.794 kb on - strand, within Xcc-8004.3760.1 at 3632.853 kb on + strand, within Xcc-8004.3760.1 at 3632.853 kb on + strand, within Xcc-8004.3760.1 at 3632.854 kb on - strand, within Xcc-8004.3760.1 at 3632.874 kb on + strand, within Xcc-8004.3760.1 at 3632.874 kb on + strand, within Xcc-8004.3760.1 at 3632.874 kb on + strand, within Xcc-8004.3760.1 at 3633.255 kb on + strand at 3633.355 kb on + strand at 3633.356 kb on - strand at 3633.356 kb on - strand at 3633.405 kb on + strand at 3633.405 kb on + strand at 3633.406 kb on - strand at 3633.406 kb on - strand at 3633.427 kb on + strand at 3633.428 kb on - strand at 3633.468 kb on + strand at 3633.469 kb on - strand at 3633.560 kb on + strand at 3633.560 kb on + strand at 3633.560 kb on + strand at 3633.561 kb on - strand at 3633.585 kb on + strand at 3633.585 kb on + strand at 3633.585 kb on + strand at 3633.585 kb on + strand at 3633.586 kb on - strand at 3633.618 kb on + strand at 3633.618 kb on + strand at 3633.618 kb on + strand at 3633.619 kb on - strand at 3633.619 kb on - strand at 3633.713 kb on + strand at 3634.212 kb on + strand, within Xcc-8004.3761.1 at 3634.212 kb on + strand, within Xcc-8004.3761.1 at 3634.212 kb on + strand, within Xcc-8004.3761.1 at 3634.212 kb on + strand, within Xcc-8004.3761.1 at 3634.212 kb on + strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1 at 3634.213 kb on - strand, within Xcc-8004.3761.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,629,948 + +0.8 3,629,949 - -0.2 3,629,985 - +0.2 3,629,985 - +0.8 3,630,077 + Xcc-8004.3759.1 0.10 +0.1 3,630,098 + Xcc-8004.3759.1 0.13 +3.1 3,630,099 - Xcc-8004.3759.1 0.13 +0.1 3,630,101 + Xcc-8004.3759.1 0.13 +0.8 3,630,102 - Xcc-8004.3759.1 0.14 -0.1 3,630,123 - Xcc-8004.3759.1 0.17 -0.1 3,630,375 - Xcc-8004.3759.1 0.52 +1.4 3,630,793 - -0.3 3,630,910 - -0.1 3,630,910 - -0.8 3,630,910 - -0.8 3,630,918 + +2.0 3,630,918 + +0.1 3,630,918 + -0.3 3,630,919 - -1.5 3,631,216 + Xcc-8004.3760.1 0.21 -0.9 3,631,216 + Xcc-8004.3760.1 0.21 -1.4 3,631,216 + Xcc-8004.3760.1 0.21 -0.8 3,631,217 - Xcc-8004.3760.1 0.21 +0.0 3,631,217 - Xcc-8004.3760.1 0.21 -0.2 3,631,217 - Xcc-8004.3760.1 0.21 -0.7 3,631,410 + Xcc-8004.3760.1 0.29 -0.2 3,631,410 + Xcc-8004.3760.1 0.29 -1.2 3,631,410 + Xcc-8004.3760.1 0.29 +0.5 3,631,411 - Xcc-8004.3760.1 0.29 +0.4 3,631,411 - Xcc-8004.3760.1 0.29 -2.2 3,631,411 - Xcc-8004.3760.1 0.29 -1.0 3,631,642 + Xcc-8004.3760.1 0.38 +0.8 3,631,869 + Xcc-8004.3760.1 0.46 -0.0 3,631,974 + Xcc-8004.3760.1 0.50 -0.2 3,632,106 + Xcc-8004.3760.1 0.55 +1.8 3,632,107 - Xcc-8004.3760.1 0.55 -2.2 3,632,109 + Xcc-8004.3760.1 0.55 +0.4 3,632,109 + Xcc-8004.3760.1 0.55 -1.5 3,632,109 + Xcc-8004.3760.1 0.55 +0.9 3,632,110 - Xcc-8004.3760.1 0.55 -0.0 3,632,110 - Xcc-8004.3760.1 0.55 -0.6 3,632,110 - Xcc-8004.3760.1 0.55 -1.3 3,632,154 + Xcc-8004.3760.1 0.57 -1.5 3,632,191 - Xcc-8004.3760.1 0.59 +0.2 3,632,272 - Xcc-8004.3760.1 0.62 +0.1 3,632,556 + Xcc-8004.3760.1 0.72 -1.2 3,632,556 + Xcc-8004.3760.1 0.72 -0.8 3,632,557 - Xcc-8004.3760.1 0.72 +0.3 3,632,557 - Xcc-8004.3760.1 0.72 -1.9 3,632,604 + Xcc-8004.3760.1 0.74 +0.8 3,632,604 + Xcc-8004.3760.1 0.74 -0.6 3,632,604 + Xcc-8004.3760.1 0.74 +1.6 3,632,604 + Xcc-8004.3760.1 0.74 +0.2 3,632,604 + Xcc-8004.3760.1 0.74 -0.5 3,632,604 + Xcc-8004.3760.1 0.74 +0.1 3,632,604 + Xcc-8004.3760.1 0.74 -1.0 3,632,605 - Xcc-8004.3760.1 0.74 -0.3 3,632,605 - Xcc-8004.3760.1 0.74 +0.2 3,632,605 - Xcc-8004.3760.1 0.74 -1.2 3,632,605 - Xcc-8004.3760.1 0.74 -0.2 3,632,605 - Xcc-8004.3760.1 0.74 +0.5 3,632,605 - Xcc-8004.3760.1 0.74 -0.5 3,632,608 + Xcc-8004.3760.1 0.74 -0.3 3,632,608 + Xcc-8004.3760.1 0.74 +0.4 3,632,609 - Xcc-8004.3760.1 0.74 +0.6 3,632,724 + Xcc-8004.3760.1 0.79 -0.5 3,632,724 + Xcc-8004.3760.1 0.79 +1.4 3,632,793 + Xcc-8004.3760.1 0.81 -1.6 3,632,793 + Xcc-8004.3760.1 0.81 -0.1 3,632,793 + Xcc-8004.3760.1 0.81 -0.2 3,632,794 - Xcc-8004.3760.1 0.82 -1.8 3,632,794 - Xcc-8004.3760.1 0.82 +0.5 3,632,794 - Xcc-8004.3760.1 0.82 +0.8 3,632,794 - Xcc-8004.3760.1 0.82 -3.3 3,632,794 - Xcc-8004.3760.1 0.82 -0.3 3,632,794 - Xcc-8004.3760.1 0.82 -0.5 3,632,794 - Xcc-8004.3760.1 0.82 -0.9 3,632,853 + Xcc-8004.3760.1 0.84 -1.3 3,632,853 + Xcc-8004.3760.1 0.84 +0.1 3,632,854 - Xcc-8004.3760.1 0.84 -0.1 3,632,874 + Xcc-8004.3760.1 0.85 -1.4 3,632,874 + Xcc-8004.3760.1 0.85 -0.9 3,632,874 + Xcc-8004.3760.1 0.85 -0.2 3,633,255 + +0.8 3,633,355 + +0.6 3,633,356 - -0.2 3,633,356 - -0.5 3,633,405 + -0.1 3,633,405 + +2.8 3,633,406 - -1.2 3,633,406 - +0.3 3,633,427 + -1.6 3,633,428 - +0.3 3,633,468 + -0.2 3,633,469 - +2.0 3,633,560 + -1.0 3,633,560 + -1.2 3,633,560 + -0.1 3,633,561 - +0.2 3,633,585 + +2.7 3,633,585 + +0.6 3,633,585 + +0.5 3,633,585 + +0.4 3,633,586 - +0.6 3,633,618 + +0.5 3,633,618 + +0.7 3,633,618 + +0.2 3,633,619 - +0.8 3,633,619 - +0.0 3,633,713 + +0.6 3,634,212 + Xcc-8004.3761.1 0.67 -2.5 3,634,212 + Xcc-8004.3761.1 0.67 -0.7 3,634,212 + Xcc-8004.3761.1 0.67 +0.2 3,634,212 + Xcc-8004.3761.1 0.67 +0.1 3,634,212 + Xcc-8004.3761.1 0.67 -1.5 3,634,213 - Xcc-8004.3761.1 0.67 -0.4 3,634,213 - Xcc-8004.3761.1 0.67 +2.8 3,634,213 - Xcc-8004.3761.1 0.67 +0.0 3,634,213 - Xcc-8004.3761.1 0.67 -0.8 3,634,213 - Xcc-8004.3761.1 0.67 -1.5 3,634,213 - Xcc-8004.3761.1 0.67 -0.3 3,634,213 - Xcc-8004.3761.1 0.67 +0.7 3,634,213 - Xcc-8004.3761.1 0.67 +0.2 3,634,213 - Xcc-8004.3761.1 0.67 +0.4
Or see this region's nucleotide sequence