Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3703.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3702.1 and Xcc-8004.3703.1 are separated by 512 nucleotidesXcc-8004.3703.1 and Xcc-8004.3705.1 are separated by 90 nucleotides Xcc-8004.3702.1: Xcc-8004.3702.1 - Beta-glucosidase (EC 3.2.1.21), at 3,585,592 to 3,586,536 Xcc-8004.3702.1 Xcc-8004.3703.1: Xcc-8004.3703.1 - putative; ORF located using Glimmer/Genemark, at 3,587,049 to 3,587,900 Xcc-8004.3703.1 Xcc-8004.3705.1: Xcc-8004.3705.1 - Mobile element protein, at 3,587,991 to 3,588,971 Xcc-8004.3705.1 Position (kb) 3587 3588Strain fitness (log2 ratio) -1 0 1at 3586.083 kb on - strand, within Xcc-8004.3702.1at 3586.125 kb on - strand, within Xcc-8004.3702.1at 3586.562 kb on + strandat 3586.621 kb on + strandat 3586.733 kb on + strandat 3586.733 kb on + strandat 3586.808 kb on - strandat 3587.116 kb on - strandat 3587.595 kb on + strand, within Xcc-8004.3703.1at 3587.596 kb on - strand, within Xcc-8004.3703.1at 3587.596 kb on - strand, within Xcc-8004.3703.1at 3587.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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3,586,083 - Xcc-8004.3702.1 0.52 +1.2
3,586,125 - Xcc-8004.3702.1 0.56 -0.1
3,586,562 + -0.4
3,586,621 + -0.6
3,586,733 + -0.4
3,586,733 + -0.8
3,586,808 - +0.9
3,587,116 - +0.2
3,587,595 + Xcc-8004.3703.1 0.64 -0.3
3,587,596 - Xcc-8004.3703.1 0.64 -0.9
3,587,596 - Xcc-8004.3703.1 0.64 -1.6
3,587,874 - -0.2

Or see this region's nucleotide sequence