Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3654.1 and Xcc-8004.3655.1 overlap by 4 nucleotides Xcc-8004.3655.1 and Xcc-8004.3656.1 overlap by 4 nucleotides
Xcc-8004.3654.1: Xcc-8004.3654.1 - hypothetical protein, at 3,533,039 to 3,534,049
Xcc-8004.3654.1
Xcc-8004.3655.1: Xcc-8004.3655.1 - FIG01210025: hypothetical protein, at 3,534,046 to 3,534,279
Xcc-8004.3655.1
Xcc-8004.3656.1: Xcc-8004.3656.1 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 3,534,276 to 3,535,880
Xcc-8004.3656.1
Position (kb) 3534
3535 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3533.096 kb on + strand at 3533.096 kb on + strand at 3533.096 kb on + strand at 3533.097 kb on - strand at 3533.119 kb on + strand at 3533.198 kb on + strand, within Xcc-8004.3654.1 at 3533.199 kb on - strand, within Xcc-8004.3654.1 at 3533.255 kb on + strand, within Xcc-8004.3654.1 at 3533.255 kb on + strand, within Xcc-8004.3654.1 at 3533.255 kb on + strand, within Xcc-8004.3654.1 at 3533.256 kb on - strand, within Xcc-8004.3654.1 at 3533.390 kb on + strand, within Xcc-8004.3654.1 at 3533.390 kb on + strand, within Xcc-8004.3654.1 at 3533.391 kb on - strand, within Xcc-8004.3654.1 at 3533.480 kb on + strand, within Xcc-8004.3654.1 at 3533.480 kb on + strand, within Xcc-8004.3654.1 at 3533.567 kb on + strand, within Xcc-8004.3654.1 at 3533.567 kb on + strand, within Xcc-8004.3654.1 at 3533.567 kb on + strand, within Xcc-8004.3654.1 at 3533.568 kb on - strand, within Xcc-8004.3654.1 at 3533.568 kb on - strand, within Xcc-8004.3654.1 at 3533.568 kb on - strand, within Xcc-8004.3654.1 at 3533.573 kb on + strand, within Xcc-8004.3654.1 at 3533.573 kb on + strand, within Xcc-8004.3654.1 at 3533.573 kb on + strand, within Xcc-8004.3654.1 at 3533.573 kb on + strand, within Xcc-8004.3654.1 at 3533.573 kb on + strand, within Xcc-8004.3654.1 at 3533.574 kb on - strand, within Xcc-8004.3654.1 at 3533.574 kb on - strand, within Xcc-8004.3654.1 at 3533.574 kb on - strand, within Xcc-8004.3654.1 at 3533.574 kb on - strand, within Xcc-8004.3654.1 at 3533.574 kb on - strand, within Xcc-8004.3654.1 at 3533.739 kb on - strand, within Xcc-8004.3654.1 at 3533.867 kb on + strand, within Xcc-8004.3654.1 at 3533.867 kb on + strand, within Xcc-8004.3654.1 at 3533.867 kb on + strand, within Xcc-8004.3654.1 at 3533.867 kb on + strand, within Xcc-8004.3654.1 at 3533.867 kb on + strand, within Xcc-8004.3654.1 at 3533.868 kb on - strand, within Xcc-8004.3654.1 at 3533.868 kb on - strand, within Xcc-8004.3654.1 at 3533.868 kb on - strand, within Xcc-8004.3654.1 at 3533.868 kb on - strand, within Xcc-8004.3654.1 at 3534.070 kb on + strand, within Xcc-8004.3655.1 at 3534.070 kb on + strand, within Xcc-8004.3655.1 at 3534.297 kb on + strand at 3534.297 kb on + strand at 3534.354 kb on + strand at 3534.354 kb on + strand at 3534.355 kb on - strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.396 kb on + strand at 3534.397 kb on - strand at 3534.397 kb on - strand at 3534.397 kb on - strand at 3534.397 kb on - strand at 3534.397 kb on - strand at 3534.397 kb on - strand at 3534.513 kb on + strand, within Xcc-8004.3656.1 at 3534.513 kb on + strand, within Xcc-8004.3656.1 at 3534.513 kb on + strand, within Xcc-8004.3656.1 at 3534.513 kb on + strand, within Xcc-8004.3656.1 at 3534.514 kb on - strand, within Xcc-8004.3656.1 at 3534.514 kb on - strand, within Xcc-8004.3656.1 at 3534.514 kb on - strand, within Xcc-8004.3656.1 at 3534.514 kb on - strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.843 kb on + strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3534.844 kb on - strand, within Xcc-8004.3656.1 at 3535.242 kb on + strand, within Xcc-8004.3656.1 at 3535.242 kb on + strand, within Xcc-8004.3656.1 at 3535.243 kb on - strand, within Xcc-8004.3656.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,533,096 + +0.1 3,533,096 + -0.2 3,533,096 + +0.8 3,533,097 - -0.9 3,533,119 + -0.8 3,533,198 + Xcc-8004.3654.1 0.16 +0.8 3,533,199 - Xcc-8004.3654.1 0.16 -0.6 3,533,255 + Xcc-8004.3654.1 0.21 +0.2 3,533,255 + Xcc-8004.3654.1 0.21 -1.3 3,533,255 + Xcc-8004.3654.1 0.21 -0.9 3,533,256 - Xcc-8004.3654.1 0.21 -0.2 3,533,390 + Xcc-8004.3654.1 0.35 -1.8 3,533,390 + Xcc-8004.3654.1 0.35 -1.8 3,533,391 - Xcc-8004.3654.1 0.35 +0.5 3,533,480 + Xcc-8004.3654.1 0.44 +0.0 3,533,480 + Xcc-8004.3654.1 0.44 +0.2 3,533,567 + Xcc-8004.3654.1 0.52 -0.3 3,533,567 + Xcc-8004.3654.1 0.52 +0.4 3,533,567 + Xcc-8004.3654.1 0.52 -0.6 3,533,568 - Xcc-8004.3654.1 0.52 +0.4 3,533,568 - Xcc-8004.3654.1 0.52 +0.1 3,533,568 - Xcc-8004.3654.1 0.52 +0.2 3,533,573 + Xcc-8004.3654.1 0.53 +0.3 3,533,573 + Xcc-8004.3654.1 0.53 -0.7 3,533,573 + Xcc-8004.3654.1 0.53 -1.4 3,533,573 + Xcc-8004.3654.1 0.53 +0.0 3,533,573 + Xcc-8004.3654.1 0.53 +2.6 3,533,574 - Xcc-8004.3654.1 0.53 +0.1 3,533,574 - Xcc-8004.3654.1 0.53 +1.2 3,533,574 - Xcc-8004.3654.1 0.53 -0.3 3,533,574 - Xcc-8004.3654.1 0.53 +0.1 3,533,574 - Xcc-8004.3654.1 0.53 -0.5 3,533,739 - Xcc-8004.3654.1 0.69 -0.2 3,533,867 + Xcc-8004.3654.1 0.82 -0.8 3,533,867 + Xcc-8004.3654.1 0.82 -1.5 3,533,867 + Xcc-8004.3654.1 0.82 -1.2 3,533,867 + Xcc-8004.3654.1 0.82 -0.8 3,533,867 + Xcc-8004.3654.1 0.82 -0.2 3,533,868 - Xcc-8004.3654.1 0.82 +2.4 3,533,868 - Xcc-8004.3654.1 0.82 -1.5 3,533,868 - Xcc-8004.3654.1 0.82 -0.5 3,533,868 - Xcc-8004.3654.1 0.82 -1.2 3,534,070 + Xcc-8004.3655.1 0.10 -0.8 3,534,070 + Xcc-8004.3655.1 0.10 -0.7 3,534,297 + +1.3 3,534,297 + +0.1 3,534,354 + +0.0 3,534,354 + +0.4 3,534,355 - -0.5 3,534,396 + -1.6 3,534,396 + -0.4 3,534,396 + +0.0 3,534,396 + -0.1 3,534,396 + -0.2 3,534,396 + -1.2 3,534,396 + +0.8 3,534,396 + +1.1 3,534,396 + -0.3 3,534,397 - -0.9 3,534,397 - -1.5 3,534,397 - +0.9 3,534,397 - -0.6 3,534,397 - +0.5 3,534,397 - -0.9 3,534,513 + Xcc-8004.3656.1 0.15 -0.6 3,534,513 + Xcc-8004.3656.1 0.15 -0.8 3,534,513 + Xcc-8004.3656.1 0.15 +1.1 3,534,513 + Xcc-8004.3656.1 0.15 +0.2 3,534,514 - Xcc-8004.3656.1 0.15 +1.6 3,534,514 - Xcc-8004.3656.1 0.15 +0.1 3,534,514 - Xcc-8004.3656.1 0.15 +1.1 3,534,514 - Xcc-8004.3656.1 0.15 -0.3 3,534,843 + Xcc-8004.3656.1 0.35 -0.9 3,534,843 + Xcc-8004.3656.1 0.35 +0.5 3,534,843 + Xcc-8004.3656.1 0.35 -0.2 3,534,843 + Xcc-8004.3656.1 0.35 -1.0 3,534,843 + Xcc-8004.3656.1 0.35 +0.5 3,534,843 + Xcc-8004.3656.1 0.35 +0.2 3,534,843 + Xcc-8004.3656.1 0.35 -1.2 3,534,843 + Xcc-8004.3656.1 0.35 +1.4 3,534,843 + Xcc-8004.3656.1 0.35 -1.2 3,534,843 + Xcc-8004.3656.1 0.35 +1.0 3,534,843 + Xcc-8004.3656.1 0.35 +0.3 3,534,844 - Xcc-8004.3656.1 0.35 -0.9 3,534,844 - Xcc-8004.3656.1 0.35 +1.6 3,534,844 - Xcc-8004.3656.1 0.35 +1.8 3,534,844 - Xcc-8004.3656.1 0.35 +1.2 3,534,844 - Xcc-8004.3656.1 0.35 -0.3 3,534,844 - Xcc-8004.3656.1 0.35 -0.1 3,534,844 - Xcc-8004.3656.1 0.35 -1.0 3,534,844 - Xcc-8004.3656.1 0.35 -0.0 3,534,844 - Xcc-8004.3656.1 0.35 -1.6 3,534,844 - Xcc-8004.3656.1 0.35 +0.0 3,534,844 - Xcc-8004.3656.1 0.35 +1.0 3,534,844 - Xcc-8004.3656.1 0.35 +1.4 3,535,242 + Xcc-8004.3656.1 0.60 +0.5 3,535,242 + Xcc-8004.3656.1 0.60 -0.8 3,535,243 - Xcc-8004.3656.1 0.60 +0.2
Or see this region's nucleotide sequence