Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3372.1 and Xcc-8004.3373.1 are separated by 29 nucleotides Xcc-8004.3373.1 and Xcc-8004.3374.1 overlap by 4 nucleotides Xcc-8004.3374.1 and Xcc-8004.3375.1 are separated by 252 nucleotides Xcc-8004.3375.1 and Xcc-8004.3376.1 are separated by 28 nucleotides Xcc-8004.3376.1 and Xcc-8004.3377.1 are separated by 28 nucleotides Xcc-8004.3377.1 and Xcc-8004.3378.1 are separated by 28 nucleotides
Xcc-8004.3372.1: Xcc-8004.3372.1 - Beta-glucosidase (EC 3.2.1.21), at 3,268,200 to 3,269,723
Xcc-8004.3372.1
Xcc-8004.3373.1: Xcc-8004.3373.1 - hypothetical protein, at 3,269,753 to 3,270,010
Xcc-8004.3373.1
Xcc-8004.3374.1: Xcc-8004.3374.1 - hypothetical protein, at 3,270,007 to 3,270,231
Xcc-8004.3374.1
Xcc-8004.3375.1: Xcc-8004.3375.1 - hypothetical protein, at 3,270,484 to 3,270,594
Xcc-8004.3375.1
Xcc-8004.3376.1: Xcc-8004.3376.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,623 to 3,270,733
Xcc-8004.3376.1
Xcc-8004.3377.1: Xcc-8004.3377.1 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 3,270,762 to 3,270,872
Xcc-8004.3377.1
Xcc-8004.3378.1: Xcc-8004.3378.1 - hypothetical protein, at 3,270,901 to 3,272,049
Xcc-8004.3378.1
Position (kb) 3270
3271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3269.032 kb on + strand, within Xcc-8004.3372.1 at 3269.032 kb on + strand, within Xcc-8004.3372.1 at 3269.033 kb on - strand, within Xcc-8004.3372.1 at 3269.033 kb on - strand, within Xcc-8004.3372.1 at 3269.033 kb on - strand, within Xcc-8004.3372.1 at 3269.089 kb on + strand, within Xcc-8004.3372.1 at 3269.089 kb on + strand, within Xcc-8004.3372.1 at 3269.089 kb on + strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.090 kb on - strand, within Xcc-8004.3372.1 at 3269.397 kb on + strand, within Xcc-8004.3372.1 at 3269.398 kb on - strand, within Xcc-8004.3372.1 at 3269.398 kb on - strand, within Xcc-8004.3372.1 at 3269.423 kb on - strand, within Xcc-8004.3372.1 at 3269.423 kb on - strand, within Xcc-8004.3372.1 at 3269.476 kb on + strand, within Xcc-8004.3372.1 at 3269.476 kb on + strand, within Xcc-8004.3372.1 at 3269.477 kb on - strand, within Xcc-8004.3372.1 at 3269.477 kb on - strand, within Xcc-8004.3372.1 at 3269.477 kb on - strand, within Xcc-8004.3372.1 at 3269.477 kb on - strand, within Xcc-8004.3372.1 at 3269.646 kb on + strand at 3269.775 kb on - strand at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.787 kb on + strand, within Xcc-8004.3373.1 at 3269.788 kb on - strand, within Xcc-8004.3373.1 at 3269.788 kb on - strand, within Xcc-8004.3373.1 at 3269.860 kb on + strand, within Xcc-8004.3373.1 at 3269.860 kb on + strand, within Xcc-8004.3373.1 at 3269.861 kb on - strand, within Xcc-8004.3373.1 at 3269.861 kb on - strand, within Xcc-8004.3373.1 at 3269.869 kb on + strand, within Xcc-8004.3373.1 at 3269.933 kb on + strand, within Xcc-8004.3373.1 at 3269.934 kb on - strand, within Xcc-8004.3373.1 at 3269.958 kb on + strand, within Xcc-8004.3373.1 at 3270.000 kb on + strand at 3270.063 kb on + strand, within Xcc-8004.3374.1 at 3270.092 kb on + strand, within Xcc-8004.3374.1 at 3270.093 kb on - strand, within Xcc-8004.3374.1 at 3270.093 kb on - strand, within Xcc-8004.3374.1 at 3270.155 kb on - strand, within Xcc-8004.3374.1 at 3270.285 kb on - strand at 3270.313 kb on + strand at 3270.313 kb on + strand at 3270.314 kb on - strand at 3270.377 kb on + strand at 3270.377 kb on + strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.403 kb on - strand at 3270.425 kb on - strand at 3270.425 kb on - strand at 3270.444 kb on + strand at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.545 kb on + strand, within Xcc-8004.3375.1 at 3270.546 kb on - strand, within Xcc-8004.3375.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.684 kb on + strand, within Xcc-8004.3376.1 at 3270.823 kb on + strand, within Xcc-8004.3377.1 at 3270.962 kb on + strand at 3270.962 kb on + strand at 3270.962 kb on + strand at 3270.963 kb on - strand at 3270.992 kb on + strand at 3271.019 kb on + strand, within Xcc-8004.3378.1 at 3271.020 kb on - strand, within Xcc-8004.3378.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,269,032 + Xcc-8004.3372.1 0.55 +0.1 3,269,032 + Xcc-8004.3372.1 0.55 +0.6 3,269,033 - Xcc-8004.3372.1 0.55 +0.1 3,269,033 - Xcc-8004.3372.1 0.55 -0.6 3,269,033 - Xcc-8004.3372.1 0.55 -0.4 3,269,089 + Xcc-8004.3372.1 0.58 -0.3 3,269,089 + Xcc-8004.3372.1 0.58 -1.9 3,269,089 + Xcc-8004.3372.1 0.58 -0.8 3,269,090 - Xcc-8004.3372.1 0.58 -1.2 3,269,090 - Xcc-8004.3372.1 0.58 -2.0 3,269,090 - Xcc-8004.3372.1 0.58 +0.6 3,269,090 - Xcc-8004.3372.1 0.58 -0.2 3,269,090 - Xcc-8004.3372.1 0.58 +0.2 3,269,090 - Xcc-8004.3372.1 0.58 -0.9 3,269,397 + Xcc-8004.3372.1 0.79 +2.8 3,269,398 - Xcc-8004.3372.1 0.79 +0.1 3,269,398 - Xcc-8004.3372.1 0.79 -0.2 3,269,423 - Xcc-8004.3372.1 0.80 -0.6 3,269,423 - Xcc-8004.3372.1 0.80 -0.1 3,269,476 + Xcc-8004.3372.1 0.84 -0.7 3,269,476 + Xcc-8004.3372.1 0.84 -2.2 3,269,477 - Xcc-8004.3372.1 0.84 -1.8 3,269,477 - Xcc-8004.3372.1 0.84 -1.5 3,269,477 - Xcc-8004.3372.1 0.84 +0.5 3,269,477 - Xcc-8004.3372.1 0.84 +0.2 3,269,646 + +0.7 3,269,775 - +0.2 3,269,787 + Xcc-8004.3373.1 0.13 -0.1 3,269,787 + Xcc-8004.3373.1 0.13 -0.4 3,269,787 + Xcc-8004.3373.1 0.13 -0.2 3,269,788 - Xcc-8004.3373.1 0.14 -0.5 3,269,788 - Xcc-8004.3373.1 0.14 -0.3 3,269,860 + Xcc-8004.3373.1 0.41 +0.1 3,269,860 + Xcc-8004.3373.1 0.41 +0.8 3,269,861 - Xcc-8004.3373.1 0.42 -0.9 3,269,861 - Xcc-8004.3373.1 0.42 -0.4 3,269,869 + Xcc-8004.3373.1 0.45 +0.6 3,269,933 + Xcc-8004.3373.1 0.70 +0.3 3,269,934 - Xcc-8004.3373.1 0.70 +1.8 3,269,958 + Xcc-8004.3373.1 0.79 +0.4 3,270,000 + -0.7 3,270,063 + Xcc-8004.3374.1 0.25 -0.5 3,270,092 + Xcc-8004.3374.1 0.38 -0.2 3,270,093 - Xcc-8004.3374.1 0.38 -1.2 3,270,093 - Xcc-8004.3374.1 0.38 +1.2 3,270,155 - Xcc-8004.3374.1 0.66 -1.5 3,270,285 - +1.0 3,270,313 + -0.2 3,270,313 + +0.1 3,270,314 - -2.9 3,270,377 + -0.7 3,270,377 + +1.3 3,270,403 - -0.2 3,270,403 - -0.6 3,270,403 - -0.4 3,270,403 - +1.1 3,270,403 - +0.3 3,270,403 - +0.0 3,270,425 - -0.5 3,270,425 - -1.4 3,270,444 + +0.1 3,270,545 + Xcc-8004.3375.1 0.55 -0.3 3,270,545 + Xcc-8004.3375.1 0.55 -1.0 3,270,545 + Xcc-8004.3375.1 0.55 +1.4 3,270,545 + Xcc-8004.3375.1 0.55 +1.0 3,270,546 - Xcc-8004.3375.1 0.56 -0.1 3,270,684 + Xcc-8004.3376.1 0.55 +0.3 3,270,684 + Xcc-8004.3376.1 0.55 +0.3 3,270,684 + Xcc-8004.3376.1 0.55 -0.9 3,270,684 + Xcc-8004.3376.1 0.55 -0.5 3,270,684 + Xcc-8004.3376.1 0.55 +0.8 3,270,684 + Xcc-8004.3376.1 0.55 +3.4 3,270,823 + Xcc-8004.3377.1 0.55 +0.4 3,270,962 + +1.1 3,270,962 + +0.7 3,270,962 + +3.4 3,270,963 - +0.8 3,270,992 + -0.1 3,271,019 + Xcc-8004.3378.1 0.10 +0.5 3,271,020 - Xcc-8004.3378.1 0.10 +1.8
Or see this region's nucleotide sequence