Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3331.1 and Xcc-8004.3332.1 are separated by 36 nucleotides Xcc-8004.3332.1 and Xcc-8004.3333.1 overlap by 4 nucleotides Xcc-8004.3333.1 and Xcc-8004.3334.1 are separated by 171 nucleotides
Xcc-8004.3331.1: Xcc-8004.3331.1 - FIG01210780: hypothetical protein, at 3,231,303 to 3,231,875
Xcc-8004.3331.1
Xcc-8004.3332.1: Xcc-8004.3332.1 - Spermidine synthase (EC 2.5.1.16), at 3,231,912 to 3,232,655
Xcc-8004.3332.1
Xcc-8004.3333.1: Xcc-8004.3333.1 - 5'-nucleotidase (EC 3.1.3.5), at 3,232,652 to 3,233,617
Xcc-8004.3333.1
Xcc-8004.3334.1: Xcc-8004.3334.1 - NAD kinase (EC 2.7.1.23), at 3,233,789 to 3,234,565
Xcc-8004.3334.1
Position (kb) 3232
3233
3234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3231.675 kb on + strand, within Xcc-8004.3331.1 at 3231.675 kb on + strand, within Xcc-8004.3331.1 at 3231.913 kb on + strand at 3232.037 kb on + strand, within Xcc-8004.3332.1 at 3232.205 kb on - strand, within Xcc-8004.3332.1 at 3232.205 kb on - strand, within Xcc-8004.3332.1 at 3232.249 kb on + strand, within Xcc-8004.3332.1 at 3232.250 kb on - strand, within Xcc-8004.3332.1 at 3232.263 kb on + strand, within Xcc-8004.3332.1 at 3232.263 kb on + strand, within Xcc-8004.3332.1 at 3232.264 kb on - strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.492 kb on - strand, within Xcc-8004.3332.1 at 3232.520 kb on + strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.522 kb on + strand, within Xcc-8004.3332.1 at 3232.759 kb on + strand, within Xcc-8004.3333.1 at 3232.760 kb on - strand, within Xcc-8004.3333.1 at 3233.274 kb on + strand, within Xcc-8004.3333.1 at 3233.274 kb on + strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.328 kb on + strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.619 kb on + strand at 3233.619 kb on + strand at 3233.707 kb on + strand at 3233.707 kb on + strand at 3233.708 kb on - strand at 3233.708 kb on - strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.722 kb on - strand at 3233.722 kb on - strand at 3233.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,231,675 + Xcc-8004.3331.1 0.65 -0.1 3,231,675 + Xcc-8004.3331.1 0.65 -0.4 3,231,913 + +1.0 3,232,037 + Xcc-8004.3332.1 0.17 -0.2 3,232,205 - Xcc-8004.3332.1 0.39 -2.2 3,232,205 - Xcc-8004.3332.1 0.39 -0.2 3,232,249 + Xcc-8004.3332.1 0.45 +2.0 3,232,250 - Xcc-8004.3332.1 0.45 +1.2 3,232,263 + Xcc-8004.3332.1 0.47 +1.2 3,232,263 + Xcc-8004.3332.1 0.47 -0.5 3,232,264 - Xcc-8004.3332.1 0.47 +0.2 3,232,273 + Xcc-8004.3332.1 0.49 -0.1 3,232,273 + Xcc-8004.3332.1 0.49 +0.4 3,232,273 + Xcc-8004.3332.1 0.49 -0.5 3,232,492 - Xcc-8004.3332.1 0.78 -0.4 3,232,520 + Xcc-8004.3332.1 0.82 -1.8 3,232,521 - Xcc-8004.3332.1 0.82 -0.3 3,232,521 - Xcc-8004.3332.1 0.82 -0.0 3,232,521 - Xcc-8004.3332.1 0.82 +0.8 3,232,521 - Xcc-8004.3332.1 0.82 -1.5 3,232,522 + Xcc-8004.3332.1 0.82 +0.4 3,232,759 + Xcc-8004.3333.1 0.11 -1.5 3,232,760 - Xcc-8004.3333.1 0.11 -1.2 3,233,274 + Xcc-8004.3333.1 0.64 -0.6 3,233,274 + Xcc-8004.3333.1 0.64 -1.7 3,233,275 - Xcc-8004.3333.1 0.64 +0.4 3,233,275 - Xcc-8004.3333.1 0.64 -1.0 3,233,275 - Xcc-8004.3333.1 0.64 -0.8 3,233,328 + Xcc-8004.3333.1 0.70 -0.4 3,233,329 - Xcc-8004.3333.1 0.70 +1.8 3,233,329 - Xcc-8004.3333.1 0.70 -0.2 3,233,329 - Xcc-8004.3333.1 0.70 -1.1 3,233,329 - Xcc-8004.3333.1 0.70 +0.0 3,233,619 + -0.1 3,233,619 + -0.5 3,233,707 + -0.1 3,233,707 + -1.3 3,233,708 - -0.2 3,233,708 - +0.8 3,233,721 + +0.2 3,233,721 + -0.8 3,233,721 + -0.1 3,233,721 + -0.4 3,233,721 + -0.9 3,233,721 + +1.2 3,233,722 - -1.6 3,233,722 - -0.2 3,233,773 - -0.7
Or see this region's nucleotide sequence