Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3324.1 and Xcc-8004.3325.1 are separated by 75 nucleotides Xcc-8004.3325.1 and Xcc-8004.3326.1 overlap by 52 nucleotides Xcc-8004.3326.1 and Xcc-8004.3327.1 are separated by 32 nucleotides
Xcc-8004.3324.1: Xcc-8004.3324.1 - Carbonic anhydrase (EC 4.2.1.1), at 3,222,511 to 3,223,173
Xcc-8004.3324.1
Xcc-8004.3325.1: Xcc-8004.3325.1 - 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6), at 3,223,249 to 3,223,779
Xcc-8004.3325.1
Xcc-8004.3326.1: Xcc-8004.3326.1 - FIG01212390: hypothetical protein, at 3,223,728 to 3,225,971
Xcc-8004.3326.1
Xcc-8004.3327.1: Xcc-8004.3327.1 - Kynureninase (EC 3.7.1.3), at 3,226,004 to 3,227,275
Xcc-8004.3327.1
Position (kb) 3223
3224
3225
3226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3222.805 kb on + strand, within Xcc-8004.3324.1 at 3222.977 kb on + strand, within Xcc-8004.3324.1 at 3222.977 kb on + strand, within Xcc-8004.3324.1 at 3222.977 kb on + strand, within Xcc-8004.3324.1 at 3222.977 kb on + strand, within Xcc-8004.3324.1 at 3222.978 kb on - strand, within Xcc-8004.3324.1 at 3222.978 kb on - strand, within Xcc-8004.3324.1 at 3223.055 kb on - strand, within Xcc-8004.3324.1 at 3223.126 kb on + strand at 3223.126 kb on + strand at 3223.126 kb on + strand at 3223.161 kb on + strand at 3223.162 kb on - strand at 3223.162 kb on - strand at 3223.216 kb on + strand at 3223.216 kb on + strand at 3223.216 kb on + strand at 3223.217 kb on - strand at 3223.217 kb on - strand at 3223.217 kb on - strand at 3223.387 kb on + strand, within Xcc-8004.3325.1 at 3223.387 kb on + strand, within Xcc-8004.3325.1 at 3223.388 kb on - strand, within Xcc-8004.3325.1 at 3223.388 kb on - strand, within Xcc-8004.3325.1 at 3223.393 kb on + strand, within Xcc-8004.3325.1 at 3223.394 kb on - strand, within Xcc-8004.3325.1 at 3223.394 kb on - strand, within Xcc-8004.3325.1 at 3223.394 kb on - strand, within Xcc-8004.3325.1 at 3223.502 kb on + strand, within Xcc-8004.3325.1 at 3223.606 kb on + strand, within Xcc-8004.3325.1 at 3223.606 kb on + strand, within Xcc-8004.3325.1 at 3223.633 kb on + strand, within Xcc-8004.3325.1 at 3223.633 kb on + strand, within Xcc-8004.3325.1 at 3223.633 kb on + strand, within Xcc-8004.3325.1 at 3223.634 kb on - strand, within Xcc-8004.3325.1 at 3223.759 kb on + strand at 3223.760 kb on - strand at 3223.760 kb on - strand at 3223.760 kb on - strand at 3224.099 kb on + strand, within Xcc-8004.3326.1 at 3224.100 kb on - strand, within Xcc-8004.3326.1 at 3225.234 kb on + strand, within Xcc-8004.3326.1 at 3225.234 kb on + strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.866 kb on + strand at 3225.866 kb on + strand at 3225.866 kb on + strand at 3225.969 kb on + strand at 3225.970 kb on - strand at 3225.970 kb on - strand at 3225.970 kb on - strand at 3226.115 kb on + strand at 3226.115 kb on + strand at 3226.116 kb on - strand at 3226.116 kb on - strand at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.352 kb on + strand, within Xcc-8004.3327.1 at 3226.580 kb on + strand, within Xcc-8004.3327.1 at 3226.730 kb on + strand, within Xcc-8004.3327.1 at 3226.731 kb on - strand, within Xcc-8004.3327.1 at 3226.731 kb on - strand, within Xcc-8004.3327.1 at 3226.736 kb on + strand, within Xcc-8004.3327.1 at 3226.736 kb on + strand, within Xcc-8004.3327.1 at 3226.737 kb on - strand, within Xcc-8004.3327.1 at 3226.737 kb on - strand, within Xcc-8004.3327.1 at 3226.869 kb on + strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,222,805 + Xcc-8004.3324.1 0.44 -0.8 3,222,977 + Xcc-8004.3324.1 0.70 -1.1 3,222,977 + Xcc-8004.3324.1 0.70 +1.4 3,222,977 + Xcc-8004.3324.1 0.70 +0.2 3,222,977 + Xcc-8004.3324.1 0.70 -0.6 3,222,978 - Xcc-8004.3324.1 0.70 -1.5 3,222,978 - Xcc-8004.3324.1 0.70 -3.2 3,223,055 - Xcc-8004.3324.1 0.82 -2.4 3,223,126 + +0.1 3,223,126 + -1.3 3,223,126 + -0.2 3,223,161 + +0.1 3,223,162 - -0.2 3,223,162 - -1.2 3,223,216 + +0.2 3,223,216 + +0.5 3,223,216 + -1.8 3,223,217 - +0.0 3,223,217 - +0.0 3,223,217 - -0.1 3,223,387 + Xcc-8004.3325.1 0.26 +0.1 3,223,387 + Xcc-8004.3325.1 0.26 +0.8 3,223,388 - Xcc-8004.3325.1 0.26 +1.6 3,223,388 - Xcc-8004.3325.1 0.26 -0.3 3,223,393 + Xcc-8004.3325.1 0.27 -0.0 3,223,394 - Xcc-8004.3325.1 0.27 -0.2 3,223,394 - Xcc-8004.3325.1 0.27 +0.8 3,223,394 - Xcc-8004.3325.1 0.27 -0.6 3,223,502 + Xcc-8004.3325.1 0.48 -0.2 3,223,606 + Xcc-8004.3325.1 0.67 +0.4 3,223,606 + Xcc-8004.3325.1 0.67 -1.5 3,223,633 + Xcc-8004.3325.1 0.72 +0.4 3,223,633 + Xcc-8004.3325.1 0.72 -0.8 3,223,633 + Xcc-8004.3325.1 0.72 -1.2 3,223,634 - Xcc-8004.3325.1 0.73 +1.4 3,223,759 + +0.9 3,223,760 - -1.0 3,223,760 - +1.2 3,223,760 - -1.6 3,224,099 + Xcc-8004.3326.1 0.17 -1.0 3,224,100 - Xcc-8004.3326.1 0.17 -0.8 3,225,234 + Xcc-8004.3326.1 0.67 -1.2 3,225,234 + Xcc-8004.3326.1 0.67 -0.4 3,225,235 - Xcc-8004.3326.1 0.67 +0.1 3,225,235 - Xcc-8004.3326.1 0.67 -0.2 3,225,235 - Xcc-8004.3326.1 0.67 -0.7 3,225,235 - Xcc-8004.3326.1 0.67 -1.1 3,225,866 + -0.8 3,225,866 + +0.2 3,225,866 + +0.0 3,225,969 + -0.4 3,225,970 - -0.2 3,225,970 - -0.5 3,225,970 - +0.6 3,226,115 + +0.5 3,226,115 + +0.8 3,226,116 - +0.1 3,226,116 - -0.3 3,226,241 + Xcc-8004.3327.1 0.19 +0.0 3,226,241 + Xcc-8004.3327.1 0.19 -0.3 3,226,241 + Xcc-8004.3327.1 0.19 -2.1 3,226,241 + Xcc-8004.3327.1 0.19 -0.5 3,226,241 + Xcc-8004.3327.1 0.19 +0.3 3,226,241 + Xcc-8004.3327.1 0.19 +0.5 3,226,242 - Xcc-8004.3327.1 0.19 +0.5 3,226,242 - Xcc-8004.3327.1 0.19 +0.0 3,226,242 - Xcc-8004.3327.1 0.19 -1.5 3,226,352 + Xcc-8004.3327.1 0.27 -0.4 3,226,580 + Xcc-8004.3327.1 0.45 -2.0 3,226,730 + Xcc-8004.3327.1 0.57 +0.8 3,226,731 - Xcc-8004.3327.1 0.57 +0.2 3,226,731 - Xcc-8004.3327.1 0.57 +1.0 3,226,736 + Xcc-8004.3327.1 0.58 -0.7 3,226,736 + Xcc-8004.3327.1 0.58 -0.5 3,226,737 - Xcc-8004.3327.1 0.58 +0.8 3,226,737 - Xcc-8004.3327.1 0.58 -0.8 3,226,869 + Xcc-8004.3327.1 0.68 -0.9 3,226,870 - Xcc-8004.3327.1 0.68 +0.1 3,226,870 - Xcc-8004.3327.1 0.68 +1.0 3,226,870 - Xcc-8004.3327.1 0.68 +0.3 3,226,870 - Xcc-8004.3327.1 0.68 -2.2 3,226,870 - Xcc-8004.3327.1 0.68 +1.3
Or see this region's nucleotide sequence