Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3199.1 and Xcc-8004.3201.1 are separated by 379 nucleotides Xcc-8004.3201.1 and Xcc-8004.3203.1 are separated by 52 nucleotides Xcc-8004.3203.1 and Xcc-8004.3204.1 are separated by 35 nucleotides Xcc-8004.3204.1 and Xcc-8004.3205.1 are separated by 169 nucleotides
Xcc-8004.3199.1: Xcc-8004.3199.1 - endonuclease precursor, at 3,115,969 to 3,116,706
Xcc-8004.3199.1
Xcc-8004.3201.1: Xcc-8004.3201.1 - hypothetical protein, at 3,117,086 to 3,117,403
Xcc-8004.3201.1
Xcc-8004.3203.1: Xcc-8004.3203.1 - putative; ORF located using Glimmer/Genemark, at 3,117,456 to 3,117,674
Xcc-8004.3203.1
Xcc-8004.3204.1: Xcc-8004.3204.1 - hypothetical protein, at 3,117,710 to 3,117,946
Xcc-8004.3204.1
Xcc-8004.3205.1: Xcc-8004.3205.1 - motif=eukaryotic putative RNA-binding region RNP-1 signature, at 3,118,116 to 3,118,733
Xcc-8004.3205.1
Position (kb) 3117
3118 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3116.108 kb on - strand, within Xcc-8004.3199.1 at 3116.108 kb on - strand, within Xcc-8004.3199.1 at 3116.209 kb on + strand, within Xcc-8004.3199.1 at 3116.210 kb on - strand, within Xcc-8004.3199.1 at 3116.246 kb on + strand, within Xcc-8004.3199.1 at 3116.246 kb on + strand, within Xcc-8004.3199.1 at 3116.246 kb on + strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.247 kb on - strand, within Xcc-8004.3199.1 at 3116.250 kb on + strand, within Xcc-8004.3199.1 at 3116.250 kb on + strand, within Xcc-8004.3199.1 at 3116.251 kb on - strand, within Xcc-8004.3199.1 at 3116.270 kb on - strand, within Xcc-8004.3199.1 at 3116.270 kb on - strand, within Xcc-8004.3199.1 at 3116.281 kb on + strand, within Xcc-8004.3199.1 at 3116.281 kb on + strand, within Xcc-8004.3199.1 at 3116.282 kb on - strand, within Xcc-8004.3199.1 at 3116.351 kb on + strand, within Xcc-8004.3199.1 at 3116.405 kb on - strand, within Xcc-8004.3199.1 at 3116.419 kb on + strand, within Xcc-8004.3199.1 at 3116.419 kb on + strand, within Xcc-8004.3199.1 at 3116.419 kb on + strand, within Xcc-8004.3199.1 at 3116.419 kb on + strand, within Xcc-8004.3199.1 at 3116.420 kb on - strand, within Xcc-8004.3199.1 at 3116.420 kb on - strand, within Xcc-8004.3199.1 at 3116.420 kb on - strand, within Xcc-8004.3199.1 at 3116.420 kb on - strand, within Xcc-8004.3199.1 at 3116.441 kb on - strand, within Xcc-8004.3199.1 at 3116.441 kb on - strand, within Xcc-8004.3199.1 at 3116.575 kb on + strand, within Xcc-8004.3199.1 at 3116.575 kb on + strand, within Xcc-8004.3199.1 at 3116.575 kb on + strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.576 kb on - strand, within Xcc-8004.3199.1 at 3116.608 kb on + strand, within Xcc-8004.3199.1 at 3116.609 kb on - strand, within Xcc-8004.3199.1 at 3116.609 kb on - strand, within Xcc-8004.3199.1 at 3116.719 kb on - strand at 3116.738 kb on - strand at 3116.738 kb on - strand at 3116.738 kb on - strand at 3116.779 kb on + strand at 3116.783 kb on + strand at 3116.786 kb on + strand at 3116.787 kb on - strand at 3116.928 kb on + strand at 3116.936 kb on - strand at 3116.936 kb on - strand at 3116.936 kb on - strand at 3116.983 kb on + strand at 3116.992 kb on + strand at 3116.992 kb on + strand at 3117.001 kb on + strand at 3117.057 kb on + strand at 3117.057 kb on + strand at 3117.057 kb on + strand at 3117.058 kb on - strand at 3117.069 kb on - strand at 3117.140 kb on + strand, within Xcc-8004.3201.1 at 3117.172 kb on - strand, within Xcc-8004.3201.1 at 3117.401 kb on + strand at 3117.401 kb on + strand at 3117.401 kb on + strand at 3117.402 kb on - strand at 3117.673 kb on - strand at 3117.750 kb on - strand, within Xcc-8004.3204.1 at 3117.797 kb on + strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.798 kb on - strand, within Xcc-8004.3204.1 at 3117.819 kb on + strand, within Xcc-8004.3204.1 at 3117.820 kb on - strand, within Xcc-8004.3204.1 at 3117.978 kb on + strand at 3117.978 kb on + strand at 3118.090 kb on + strand at 3118.117 kb on + strand at 3118.117 kb on + strand at 3118.137 kb on + strand at 3118.138 kb on - strand at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.389 kb on - strand, within Xcc-8004.3205.1 at 3118.389 kb on - strand, within Xcc-8004.3205.1 at 3118.399 kb on + strand, within Xcc-8004.3205.1 at 3118.400 kb on - strand, within Xcc-8004.3205.1 at 3118.400 kb on - strand, within Xcc-8004.3205.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,116,108 - Xcc-8004.3199.1 0.19 +0.3 3,116,108 - Xcc-8004.3199.1 0.19 -0.9 3,116,209 + Xcc-8004.3199.1 0.33 +0.3 3,116,210 - Xcc-8004.3199.1 0.33 -1.3 3,116,246 + Xcc-8004.3199.1 0.38 +0.2 3,116,246 + Xcc-8004.3199.1 0.38 +0.8 3,116,246 + Xcc-8004.3199.1 0.38 +0.7 3,116,247 - Xcc-8004.3199.1 0.38 -0.3 3,116,247 - Xcc-8004.3199.1 0.38 +0.2 3,116,247 - Xcc-8004.3199.1 0.38 +0.4 3,116,247 - Xcc-8004.3199.1 0.38 +0.2 3,116,247 - Xcc-8004.3199.1 0.38 -1.0 3,116,247 - Xcc-8004.3199.1 0.38 -0.2 3,116,247 - Xcc-8004.3199.1 0.38 -0.4 3,116,247 - Xcc-8004.3199.1 0.38 -0.6 3,116,247 - Xcc-8004.3199.1 0.38 -1.1 3,116,250 + Xcc-8004.3199.1 0.38 +1.5 3,116,250 + Xcc-8004.3199.1 0.38 -0.2 3,116,251 - Xcc-8004.3199.1 0.38 +2.2 3,116,270 - Xcc-8004.3199.1 0.41 +0.8 3,116,270 - Xcc-8004.3199.1 0.41 +0.2 3,116,281 + Xcc-8004.3199.1 0.42 -0.4 3,116,281 + Xcc-8004.3199.1 0.42 +0.7 3,116,282 - Xcc-8004.3199.1 0.42 +0.5 3,116,351 + Xcc-8004.3199.1 0.52 -0.2 3,116,405 - Xcc-8004.3199.1 0.59 -1.0 3,116,419 + Xcc-8004.3199.1 0.61 +0.6 3,116,419 + Xcc-8004.3199.1 0.61 -0.0 3,116,419 + Xcc-8004.3199.1 0.61 +0.4 3,116,419 + Xcc-8004.3199.1 0.61 -0.9 3,116,420 - Xcc-8004.3199.1 0.61 -0.0 3,116,420 - Xcc-8004.3199.1 0.61 -1.3 3,116,420 - Xcc-8004.3199.1 0.61 -0.0 3,116,420 - Xcc-8004.3199.1 0.61 +1.5 3,116,441 - Xcc-8004.3199.1 0.64 -1.4 3,116,441 - Xcc-8004.3199.1 0.64 +0.5 3,116,575 + Xcc-8004.3199.1 0.82 +2.1 3,116,575 + Xcc-8004.3199.1 0.82 +1.8 3,116,575 + Xcc-8004.3199.1 0.82 +0.4 3,116,576 - Xcc-8004.3199.1 0.82 +0.1 3,116,576 - Xcc-8004.3199.1 0.82 -0.0 3,116,576 - Xcc-8004.3199.1 0.82 +1.1 3,116,576 - Xcc-8004.3199.1 0.82 -0.1 3,116,576 - Xcc-8004.3199.1 0.82 +0.5 3,116,576 - Xcc-8004.3199.1 0.82 +1.4 3,116,576 - Xcc-8004.3199.1 0.82 -0.6 3,116,576 - Xcc-8004.3199.1 0.82 -0.4 3,116,608 + Xcc-8004.3199.1 0.87 -2.0 3,116,609 - Xcc-8004.3199.1 0.87 +0.4 3,116,609 - Xcc-8004.3199.1 0.87 +0.6 3,116,719 - +0.0 3,116,738 - +0.6 3,116,738 - +0.3 3,116,738 - +0.3 3,116,779 + +0.7 3,116,783 + -1.7 3,116,786 + -0.0 3,116,787 - +1.0 3,116,928 + -1.8 3,116,936 - +0.2 3,116,936 - +1.2 3,116,936 - +2.5 3,116,983 + -1.8 3,116,992 + -1.8 3,116,992 + -1.7 3,117,001 + -1.0 3,117,057 + -0.7 3,117,057 + -0.1 3,117,057 + -1.0 3,117,058 - +0.6 3,117,069 - -0.2 3,117,140 + Xcc-8004.3201.1 0.17 -1.2 3,117,172 - Xcc-8004.3201.1 0.27 -0.9 3,117,401 + +0.5 3,117,401 + -0.8 3,117,401 + -0.5 3,117,402 - -1.0 3,117,673 - +0.6 3,117,750 - Xcc-8004.3204.1 0.17 -0.8 3,117,797 + Xcc-8004.3204.1 0.37 +0.2 3,117,798 - Xcc-8004.3204.1 0.37 +0.1 3,117,798 - Xcc-8004.3204.1 0.37 +1.9 3,117,798 - Xcc-8004.3204.1 0.37 -0.4 3,117,798 - Xcc-8004.3204.1 0.37 -2.5 3,117,798 - Xcc-8004.3204.1 0.37 -0.8 3,117,798 - Xcc-8004.3204.1 0.37 +0.7 3,117,798 - Xcc-8004.3204.1 0.37 +0.7 3,117,798 - Xcc-8004.3204.1 0.37 +0.1 3,117,819 + Xcc-8004.3204.1 0.46 +0.1 3,117,820 - Xcc-8004.3204.1 0.46 -0.3 3,117,978 + -0.5 3,117,978 + +0.6 3,118,090 + -0.0 3,118,117 + -0.6 3,118,117 + +1.2 3,118,137 + +0.4 3,118,138 - +0.2 3,118,388 + Xcc-8004.3205.1 0.44 +0.8 3,118,388 + Xcc-8004.3205.1 0.44 -1.8 3,118,388 + Xcc-8004.3205.1 0.44 +0.1 3,118,388 + Xcc-8004.3205.1 0.44 +0.1 3,118,388 + Xcc-8004.3205.1 0.44 -0.7 3,118,388 + Xcc-8004.3205.1 0.44 -0.0 3,118,388 + Xcc-8004.3205.1 0.44 +0.7 3,118,388 + Xcc-8004.3205.1 0.44 -0.2 3,118,388 + Xcc-8004.3205.1 0.44 +0.1 3,118,389 - Xcc-8004.3205.1 0.44 +1.1 3,118,389 - Xcc-8004.3205.1 0.44 +0.2 3,118,399 + Xcc-8004.3205.1 0.46 -0.6 3,118,400 - Xcc-8004.3205.1 0.46 -0.4 3,118,400 - Xcc-8004.3205.1 0.46 +0.8
Or see this region's nucleotide sequence