Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3057.1 and Xcc-8004.3058.1 are separated by 34 nucleotides Xcc-8004.3058.1 and Xcc-8004.3059.1 are separated by 160 nucleotides Xcc-8004.3059.1 and Xcc-8004.3060.1 are separated by 185 nucleotides
Xcc-8004.3057.1: Xcc-8004.3057.1 - GTP cyclohydrolase I (EC 3.5.4.16) type 2, at 2,988,441 to 2,989,376
Xcc-8004.3057.1
Xcc-8004.3058.1: Xcc-8004.3058.1 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 2,989,411 to 2,990,571
Xcc-8004.3058.1
Xcc-8004.3059.1: Xcc-8004.3059.1 - FIG01209874: hypothetical protein, at 2,990,732 to 2,991,016
Xcc-8004.3059.1
Xcc-8004.3060.1: Xcc-8004.3060.1 - FIG01211080: hypothetical protein, at 2,991,202 to 2,991,693
Xcc-8004.3060.1
Position (kb) 2989
2990
2991 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2988.422 kb on + strand at 2988.423 kb on - strand at 2988.559 kb on + strand, within Xcc-8004.3057.1 at 2988.559 kb on + strand, within Xcc-8004.3057.1 at 2988.560 kb on - strand, within Xcc-8004.3057.1 at 2988.560 kb on - strand, within Xcc-8004.3057.1 at 2988.560 kb on - strand, within Xcc-8004.3057.1 at 2988.560 kb on - strand, within Xcc-8004.3057.1 at 2988.607 kb on + strand, within Xcc-8004.3057.1 at 2988.607 kb on + strand, within Xcc-8004.3057.1 at 2988.608 kb on - strand, within Xcc-8004.3057.1 at 2988.608 kb on - strand, within Xcc-8004.3057.1 at 2988.608 kb on - strand, within Xcc-8004.3057.1 at 2988.608 kb on - strand, within Xcc-8004.3057.1 at 2988.608 kb on - strand, within Xcc-8004.3057.1 at 2988.672 kb on + strand, within Xcc-8004.3057.1 at 2988.780 kb on - strand, within Xcc-8004.3057.1 at 2988.780 kb on - strand, within Xcc-8004.3057.1 at 2988.793 kb on + strand, within Xcc-8004.3057.1 at 2988.794 kb on - strand, within Xcc-8004.3057.1 at 2988.794 kb on - strand, within Xcc-8004.3057.1 at 2988.894 kb on + strand, within Xcc-8004.3057.1 at 2988.895 kb on - strand, within Xcc-8004.3057.1 at 2988.925 kb on + strand, within Xcc-8004.3057.1 at 2988.925 kb on + strand, within Xcc-8004.3057.1 at 2988.925 kb on + strand, within Xcc-8004.3057.1 at 2988.926 kb on - strand, within Xcc-8004.3057.1 at 2988.926 kb on - strand, within Xcc-8004.3057.1 at 2988.926 kb on - strand, within Xcc-8004.3057.1 at 2988.995 kb on - strand, within Xcc-8004.3057.1 at 2989.178 kb on - strand, within Xcc-8004.3057.1 at 2989.317 kb on + strand at 2989.318 kb on - strand at 2989.318 kb on - strand at 2989.440 kb on - strand at 2989.471 kb on + strand at 2989.471 kb on + strand at 2989.471 kb on + strand at 2989.472 kb on - strand at 2989.472 kb on - strand at 2989.720 kb on - strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.105 kb on + strand, within Xcc-8004.3058.1 at 2990.108 kb on - strand, within Xcc-8004.3058.1 at 2990.245 kb on + strand, within Xcc-8004.3058.1 at 2990.414 kb on + strand, within Xcc-8004.3058.1 at 2990.485 kb on + strand at 2990.485 kb on + strand at 2990.486 kb on - strand at 2990.486 kb on - strand at 2990.486 kb on - strand at 2990.662 kb on - strand at 2990.680 kb on + strand at 2990.680 kb on + strand at 2990.775 kb on + strand, within Xcc-8004.3059.1 at 2990.776 kb on - strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.816 kb on + strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.817 kb on - strand, within Xcc-8004.3059.1 at 2990.818 kb on + strand, within Xcc-8004.3059.1 at 2990.819 kb on - strand, within Xcc-8004.3059.1 at 2991.014 kb on + strand at 2991.015 kb on - strand at 2991.015 kb on - strand at 2991.015 kb on - strand at 2991.018 kb on + strand at 2991.018 kb on + strand at 2991.018 kb on + strand at 2991.018 kb on + strand at 2991.018 kb on + strand at 2991.019 kb on - strand at 2991.019 kb on - strand at 2991.019 kb on - strand at 2991.055 kb on + strand at 2991.056 kb on - strand at 2991.066 kb on - strand at 2991.110 kb on - strand at 2991.164 kb on + strand at 2991.164 kb on + strand at 2991.165 kb on - strand at 2991.165 kb on - strand at 2991.165 kb on - strand at 2991.171 kb on + strand at 2991.171 kb on + strand at 2991.246 kb on + strand at 2991.246 kb on + strand at 2991.246 kb on + strand at 2991.326 kb on + strand, within Xcc-8004.3060.1 at 2991.326 kb on + strand, within Xcc-8004.3060.1 at 2991.326 kb on + strand, within Xcc-8004.3060.1 at 2991.327 kb on - strand, within Xcc-8004.3060.1 at 2991.327 kb on - strand, within Xcc-8004.3060.1 at 2991.375 kb on - strand, within Xcc-8004.3060.1 at 2991.400 kb on + strand, within Xcc-8004.3060.1 at 2991.400 kb on + strand, within Xcc-8004.3060.1 at 2991.401 kb on - strand, within Xcc-8004.3060.1 at 2991.401 kb on - strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.427 kb on + strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.428 kb on - strand, within Xcc-8004.3060.1 at 2991.446 kb on + strand, within Xcc-8004.3060.1 at 2991.446 kb on + strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.447 kb on - strand, within Xcc-8004.3060.1 at 2991.471 kb on - strand, within Xcc-8004.3060.1 at 2991.518 kb on + strand, within Xcc-8004.3060.1 at 2991.518 kb on + strand, within Xcc-8004.3060.1 at 2991.518 kb on + strand, within Xcc-8004.3060.1 at 2991.519 kb on - strand, within Xcc-8004.3060.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 2,988,422 + +1.5 2,988,423 - -2.0 2,988,559 + Xcc-8004.3057.1 0.13 +0.1 2,988,559 + Xcc-8004.3057.1 0.13 +0.4 2,988,560 - Xcc-8004.3057.1 0.13 +1.0 2,988,560 - Xcc-8004.3057.1 0.13 +0.8 2,988,560 - Xcc-8004.3057.1 0.13 +1.5 2,988,560 - Xcc-8004.3057.1 0.13 -0.7 2,988,607 + Xcc-8004.3057.1 0.18 -0.4 2,988,607 + Xcc-8004.3057.1 0.18 -0.7 2,988,608 - Xcc-8004.3057.1 0.18 +1.1 2,988,608 - Xcc-8004.3057.1 0.18 -2.2 2,988,608 - Xcc-8004.3057.1 0.18 +0.4 2,988,608 - Xcc-8004.3057.1 0.18 -0.1 2,988,608 - Xcc-8004.3057.1 0.18 -0.7 2,988,672 + Xcc-8004.3057.1 0.25 -0.4 2,988,780 - Xcc-8004.3057.1 0.36 -1.1 2,988,780 - Xcc-8004.3057.1 0.36 -0.9 2,988,793 + Xcc-8004.3057.1 0.38 -0.5 2,988,794 - Xcc-8004.3057.1 0.38 -0.2 2,988,794 - Xcc-8004.3057.1 0.38 +1.4 2,988,894 + Xcc-8004.3057.1 0.48 +1.1 2,988,895 - Xcc-8004.3057.1 0.49 -0.2 2,988,925 + Xcc-8004.3057.1 0.52 +1.6 2,988,925 + Xcc-8004.3057.1 0.52 -2.3 2,988,925 + Xcc-8004.3057.1 0.52 +0.1 2,988,926 - Xcc-8004.3057.1 0.52 -0.6 2,988,926 - Xcc-8004.3057.1 0.52 +0.8 2,988,926 - Xcc-8004.3057.1 0.52 -1.0 2,988,995 - Xcc-8004.3057.1 0.59 -0.7 2,989,178 - Xcc-8004.3057.1 0.79 -0.5 2,989,317 + -0.6 2,989,318 - +0.1 2,989,318 - -0.1 2,989,440 - +2.6 2,989,471 + +1.8 2,989,471 + -0.7 2,989,471 + +0.2 2,989,472 - +0.7 2,989,472 - -0.7 2,989,720 - Xcc-8004.3058.1 0.27 -2.4 2,990,105 + Xcc-8004.3058.1 0.60 -1.2 2,990,105 + Xcc-8004.3058.1 0.60 -1.2 2,990,105 + Xcc-8004.3058.1 0.60 +0.7 2,990,105 + Xcc-8004.3058.1 0.60 -1.0 2,990,105 + Xcc-8004.3058.1 0.60 +0.8 2,990,105 + Xcc-8004.3058.1 0.60 -1.2 2,990,105 + Xcc-8004.3058.1 0.60 +0.0 2,990,105 + Xcc-8004.3058.1 0.60 -0.7 2,990,108 - Xcc-8004.3058.1 0.60 -1.0 2,990,245 + Xcc-8004.3058.1 0.72 -0.9 2,990,414 + Xcc-8004.3058.1 0.86 +0.9 2,990,485 + -0.5 2,990,485 + -1.1 2,990,486 - -1.2 2,990,486 - -0.5 2,990,486 - -1.1 2,990,662 - -0.4 2,990,680 + -0.1 2,990,680 + -1.4 2,990,775 + Xcc-8004.3059.1 0.15 +1.2 2,990,776 - Xcc-8004.3059.1 0.15 +1.0 2,990,816 + Xcc-8004.3059.1 0.29 -0.9 2,990,816 + Xcc-8004.3059.1 0.29 +0.4 2,990,816 + Xcc-8004.3059.1 0.29 -0.2 2,990,816 + Xcc-8004.3059.1 0.29 +0.6 2,990,816 + Xcc-8004.3059.1 0.29 +0.6 2,990,816 + Xcc-8004.3059.1 0.29 -1.6 2,990,816 + Xcc-8004.3059.1 0.29 +0.7 2,990,816 + Xcc-8004.3059.1 0.29 -0.9 2,990,816 + Xcc-8004.3059.1 0.29 +0.6 2,990,816 + Xcc-8004.3059.1 0.29 -0.4 2,990,816 + Xcc-8004.3059.1 0.29 +0.8 2,990,816 + Xcc-8004.3059.1 0.29 +0.2 2,990,816 + Xcc-8004.3059.1 0.29 -1.2 2,990,816 + Xcc-8004.3059.1 0.29 -0.8 2,990,816 + Xcc-8004.3059.1 0.29 -0.3 2,990,816 + Xcc-8004.3059.1 0.29 -0.4 2,990,816 + Xcc-8004.3059.1 0.29 -1.3 2,990,816 + Xcc-8004.3059.1 0.29 -0.2 2,990,816 + Xcc-8004.3059.1 0.29 -1.0 2,990,816 + Xcc-8004.3059.1 0.29 -0.0 2,990,816 + Xcc-8004.3059.1 0.29 -0.9 2,990,816 + Xcc-8004.3059.1 0.29 +0.2 2,990,816 + Xcc-8004.3059.1 0.29 -0.4 2,990,816 + Xcc-8004.3059.1 0.29 -1.7 2,990,816 + Xcc-8004.3059.1 0.29 +2.4 2,990,817 - Xcc-8004.3059.1 0.30 +0.3 2,990,817 - Xcc-8004.3059.1 0.30 +0.5 2,990,817 - Xcc-8004.3059.1 0.30 +0.8 2,990,817 - Xcc-8004.3059.1 0.30 +0.0 2,990,817 - Xcc-8004.3059.1 0.30 +0.3 2,990,817 - Xcc-8004.3059.1 0.30 -0.4 2,990,817 - Xcc-8004.3059.1 0.30 +0.4 2,990,817 - Xcc-8004.3059.1 0.30 -0.9 2,990,817 - Xcc-8004.3059.1 0.30 -1.5 2,990,817 - Xcc-8004.3059.1 0.30 +0.3 2,990,817 - Xcc-8004.3059.1 0.30 -1.2 2,990,817 - Xcc-8004.3059.1 0.30 +0.1 2,990,817 - Xcc-8004.3059.1 0.30 +2.3 2,990,817 - Xcc-8004.3059.1 0.30 -1.0 2,990,817 - Xcc-8004.3059.1 0.30 +2.6 2,990,817 - Xcc-8004.3059.1 0.30 +0.3 2,990,817 - Xcc-8004.3059.1 0.30 -0.8 2,990,817 - Xcc-8004.3059.1 0.30 +0.8 2,990,818 + Xcc-8004.3059.1 0.30 -0.0 2,990,819 - Xcc-8004.3059.1 0.31 -1.2 2,991,014 + -0.5 2,991,015 - -1.2 2,991,015 - +0.8 2,991,015 - +0.4 2,991,018 + -1.5 2,991,018 + -0.4 2,991,018 + -0.0 2,991,018 + +0.3 2,991,018 + -0.2 2,991,019 - +0.1 2,991,019 - +0.6 2,991,019 - +0.2 2,991,055 + +0.2 2,991,056 - +2.6 2,991,066 - -1.5 2,991,110 - -0.7 2,991,164 + +0.2 2,991,164 + -0.2 2,991,165 - -1.1 2,991,165 - -0.2 2,991,165 - +0.7 2,991,171 + +0.8 2,991,171 + +0.0 2,991,246 + -0.4 2,991,246 + -0.2 2,991,246 + -1.6 2,991,326 + Xcc-8004.3060.1 0.25 -0.5 2,991,326 + Xcc-8004.3060.1 0.25 -1.7 2,991,326 + Xcc-8004.3060.1 0.25 -0.5 2,991,327 - Xcc-8004.3060.1 0.25 -0.7 2,991,327 - Xcc-8004.3060.1 0.25 -0.2 2,991,375 - Xcc-8004.3060.1 0.35 +0.6 2,991,400 + Xcc-8004.3060.1 0.40 +0.5 2,991,400 + Xcc-8004.3060.1 0.40 -0.0 2,991,401 - Xcc-8004.3060.1 0.40 +0.8 2,991,401 - Xcc-8004.3060.1 0.40 -0.2 2,991,427 + Xcc-8004.3060.1 0.46 +0.1 2,991,427 + Xcc-8004.3060.1 0.46 +1.7 2,991,427 + Xcc-8004.3060.1 0.46 -1.7 2,991,427 + Xcc-8004.3060.1 0.46 +1.1 2,991,427 + Xcc-8004.3060.1 0.46 +0.0 2,991,427 + Xcc-8004.3060.1 0.46 +1.4 2,991,428 - Xcc-8004.3060.1 0.46 +0.4 2,991,428 - Xcc-8004.3060.1 0.46 -0.2 2,991,428 - Xcc-8004.3060.1 0.46 -0.2 2,991,428 - Xcc-8004.3060.1 0.46 -0.2 2,991,428 - Xcc-8004.3060.1 0.46 +0.7 2,991,428 - Xcc-8004.3060.1 0.46 -2.7 2,991,428 - Xcc-8004.3060.1 0.46 +1.0 2,991,446 + Xcc-8004.3060.1 0.50 -0.1 2,991,446 + Xcc-8004.3060.1 0.50 -0.4 2,991,447 - Xcc-8004.3060.1 0.50 +0.6 2,991,447 - Xcc-8004.3060.1 0.50 +0.1 2,991,447 - Xcc-8004.3060.1 0.50 +0.7 2,991,447 - Xcc-8004.3060.1 0.50 +0.0 2,991,447 - Xcc-8004.3060.1 0.50 -1.1 2,991,447 - Xcc-8004.3060.1 0.50 -0.4 2,991,447 - Xcc-8004.3060.1 0.50 +0.8 2,991,471 - Xcc-8004.3060.1 0.55 -0.3 2,991,518 + Xcc-8004.3060.1 0.64 -0.7 2,991,518 + Xcc-8004.3060.1 0.64 -1.0 2,991,518 + Xcc-8004.3060.1 0.64 +0.3 2,991,519 - Xcc-8004.3060.1 0.64 -0.2
Or see this region's nucleotide sequence