Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.297.1 and Xcc-8004.298.1 are separated by 163 nucleotides Xcc-8004.298.1 and Xcc-8004.299.1 are separated by 2 nucleotides Xcc-8004.299.1 and Xcc-8004.300.1 are separated by 59 nucleotides
Xcc-8004.297.1: Xcc-8004.297.1 - FIG01210478: hypothetical protein, at 284,918 to 285,460
Xcc-8004.297.1
Xcc-8004.298.1: Xcc-8004.298.1 - Hypothetical protein YaeJ with similarity to translation release factor, at 285,624 to 285,986
Xcc-8004.298.1
Xcc-8004.299.1: Xcc-8004.299.1 - Acyltransferase, at 285,989 to 286,618
Xcc-8004.299.1
Xcc-8004.300.1: Xcc-8004.300.1 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 286,678 to 287,685
Xcc-8004.300.1
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.078 kb on + strand, within Xcc-8004.297.1 at 285.078 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.126 kb on + strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.127 kb on - strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.138 kb on + strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.139 kb on - strand, within Xcc-8004.297.1 at 285.497 kb on - strand at 285.542 kb on + strand at 285.916 kb on + strand, within Xcc-8004.298.1 at 285.916 kb on + strand, within Xcc-8004.298.1 at 285.917 kb on - strand, within Xcc-8004.298.1 at 285.944 kb on + strand, within Xcc-8004.298.1 at 285.944 kb on + strand, within Xcc-8004.298.1 at 285.984 kb on + strand at 285.984 kb on + strand at 285.985 kb on - strand at 285.985 kb on - strand at 285.985 kb on - strand at 285.985 kb on - strand at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.388 kb on + strand, within Xcc-8004.299.1 at 286.389 kb on - strand, within Xcc-8004.299.1 at 286.487 kb on + strand, within Xcc-8004.299.1 at 286.581 kb on - strand at 287.162 kb on - strand, within Xcc-8004.300.1 at 287.319 kb on + strand, within Xcc-8004.300.1 at 287.320 kb on - strand, within Xcc-8004.300.1 at 287.392 kb on + strand, within Xcc-8004.300.1 at 287.392 kb on + strand, within Xcc-8004.300.1 at 287.392 kb on + strand, within Xcc-8004.300.1 at 287.392 kb on + strand, within Xcc-8004.300.1 at 287.392 kb on + strand, within Xcc-8004.300.1 at 287.393 kb on - strand, within Xcc-8004.300.1 at 287.393 kb on - strand, within Xcc-8004.300.1 at 287.393 kb on - strand, within Xcc-8004.300.1 at 287.393 kb on - strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.440 kb on + strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.441 kb on - strand, within Xcc-8004.300.1 at 287.442 kb on + strand, within Xcc-8004.300.1 at 287.442 kb on + strand, within Xcc-8004.300.1 at 287.443 kb on - strand, within Xcc-8004.300.1 at 287.444 kb on + strand, within Xcc-8004.300.1 at 287.444 kb on + strand, within Xcc-8004.300.1 at 287.444 kb on + strand, within Xcc-8004.300.1 at 287.444 kb on + strand, within Xcc-8004.300.1 at 287.444 kb on + strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.445 kb on - strand, within Xcc-8004.300.1 at 287.461 kb on + strand, within Xcc-8004.300.1 at 287.462 kb on - strand, within Xcc-8004.300.1 at 287.485 kb on + strand, within Xcc-8004.300.1 at 287.485 kb on + strand, within Xcc-8004.300.1 at 287.486 kb on - strand, within Xcc-8004.300.1 at 287.486 kb on - strand, within Xcc-8004.300.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 285,078 + Xcc-8004.297.1 0.29 -0.4 285,078 + Xcc-8004.297.1 0.29 -1.2 285,126 + Xcc-8004.297.1 0.38 -0.2 285,126 + Xcc-8004.297.1 0.38 -0.8 285,126 + Xcc-8004.297.1 0.38 +1.6 285,127 - Xcc-8004.297.1 0.38 -1.3 285,127 - Xcc-8004.297.1 0.38 +0.0 285,127 - Xcc-8004.297.1 0.38 -1.4 285,127 - Xcc-8004.297.1 0.38 +0.8 285,127 - Xcc-8004.297.1 0.38 -0.6 285,127 - Xcc-8004.297.1 0.38 +0.4 285,127 - Xcc-8004.297.1 0.38 -2.0 285,127 - Xcc-8004.297.1 0.38 -1.0 285,138 + Xcc-8004.297.1 0.41 -0.4 285,138 + Xcc-8004.297.1 0.41 -0.4 285,138 + Xcc-8004.297.1 0.41 -1.5 285,138 + Xcc-8004.297.1 0.41 +0.4 285,138 + Xcc-8004.297.1 0.41 +0.2 285,139 - Xcc-8004.297.1 0.41 +0.4 285,139 - Xcc-8004.297.1 0.41 +0.6 285,139 - Xcc-8004.297.1 0.41 -0.5 285,139 - Xcc-8004.297.1 0.41 +0.6 285,139 - Xcc-8004.297.1 0.41 +1.9 285,139 - Xcc-8004.297.1 0.41 -0.4 285,139 - Xcc-8004.297.1 0.41 +0.6 285,497 - +0.6 285,542 + -1.0 285,916 + Xcc-8004.298.1 0.80 -0.5 285,916 + Xcc-8004.298.1 0.80 +0.1 285,917 - Xcc-8004.298.1 0.81 -0.3 285,944 + Xcc-8004.298.1 0.88 +0.6 285,944 + Xcc-8004.298.1 0.88 +0.3 285,984 + -0.3 285,984 + +0.2 285,985 - +0.6 285,985 - +0.8 285,985 - -0.3 285,985 - -0.4 286,388 + Xcc-8004.299.1 0.63 -1.0 286,388 + Xcc-8004.299.1 0.63 -1.7 286,388 + Xcc-8004.299.1 0.63 -1.0 286,389 - Xcc-8004.299.1 0.63 -0.4 286,487 + Xcc-8004.299.1 0.79 +0.6 286,581 - +1.2 287,162 - Xcc-8004.300.1 0.48 +1.5 287,319 + Xcc-8004.300.1 0.64 +1.2 287,320 - Xcc-8004.300.1 0.64 +0.6 287,392 + Xcc-8004.300.1 0.71 +0.1 287,392 + Xcc-8004.300.1 0.71 +0.6 287,392 + Xcc-8004.300.1 0.71 +0.1 287,392 + Xcc-8004.300.1 0.71 -1.0 287,392 + Xcc-8004.300.1 0.71 -1.0 287,393 - Xcc-8004.300.1 0.71 -1.4 287,393 - Xcc-8004.300.1 0.71 -0.3 287,393 - Xcc-8004.300.1 0.71 +0.6 287,393 - Xcc-8004.300.1 0.71 +0.2 287,440 + Xcc-8004.300.1 0.76 +0.1 287,440 + Xcc-8004.300.1 0.76 +0.5 287,440 + Xcc-8004.300.1 0.76 +0.5 287,440 + Xcc-8004.300.1 0.76 +0.1 287,440 + Xcc-8004.300.1 0.76 +0.5 287,440 + Xcc-8004.300.1 0.76 -1.1 287,440 + Xcc-8004.300.1 0.76 -0.6 287,440 + Xcc-8004.300.1 0.76 -1.0 287,441 - Xcc-8004.300.1 0.76 -0.1 287,441 - Xcc-8004.300.1 0.76 -0.7 287,441 - Xcc-8004.300.1 0.76 +0.8 287,441 - Xcc-8004.300.1 0.76 +1.3 287,441 - Xcc-8004.300.1 0.76 +0.2 287,441 - Xcc-8004.300.1 0.76 -0.2 287,441 - Xcc-8004.300.1 0.76 -0.4 287,441 - Xcc-8004.300.1 0.76 -0.4 287,441 - Xcc-8004.300.1 0.76 -0.3 287,441 - Xcc-8004.300.1 0.76 +0.9 287,441 - Xcc-8004.300.1 0.76 -0.3 287,442 + Xcc-8004.300.1 0.76 +0.2 287,442 + Xcc-8004.300.1 0.76 -1.5 287,443 - Xcc-8004.300.1 0.76 -1.0 287,444 + Xcc-8004.300.1 0.76 -1.3 287,444 + Xcc-8004.300.1 0.76 -1.7 287,444 + Xcc-8004.300.1 0.76 -0.2 287,444 + Xcc-8004.300.1 0.76 -0.4 287,444 + Xcc-8004.300.1 0.76 -1.4 287,445 - Xcc-8004.300.1 0.76 -1.4 287,445 - Xcc-8004.300.1 0.76 +0.0 287,445 - Xcc-8004.300.1 0.76 -0.8 287,445 - Xcc-8004.300.1 0.76 +0.8 287,445 - Xcc-8004.300.1 0.76 +0.0 287,445 - Xcc-8004.300.1 0.76 -0.5 287,445 - Xcc-8004.300.1 0.76 +0.5 287,461 + Xcc-8004.300.1 0.78 -0.6 287,462 - Xcc-8004.300.1 0.78 +0.2 287,485 + Xcc-8004.300.1 0.80 -0.6 287,485 + Xcc-8004.300.1 0.80 -0.3 287,486 - Xcc-8004.300.1 0.80 -0.4 287,486 - Xcc-8004.300.1 0.80 -1.0
Or see this region's nucleotide sequence