Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.28.1 and Xcc-8004.29.1 are separated by 257 nucleotides Xcc-8004.29.1 and Xcc-8004.30.1 are separated by 98 nucleotides Xcc-8004.30.1 and Xcc-8004.31.1 are separated by 58 nucleotides
Xcc-8004.28.1: Xcc-8004.28.1 - Carboxyl-terminal protease (EC 3.4.21.102), at 24,035 to 25,522
Xcc-8004.28.1
Xcc-8004.29.1: Xcc-8004.29.1 - Cell wall endopeptidase, family M23/M37, at 25,780 to 27,069
Xcc-8004.29.1
Xcc-8004.30.1: Xcc-8004.30.1 - FIG01212518: hypothetical protein, at 27,168 to 27,824
Xcc-8004.30.1
Xcc-8004.31.1: Xcc-8004.31.1 - Peptidase, at 27,883 to 29,667
Xcc-8004.31.1
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.897 kb on + strand, within Xcc-8004.28.1 at 24.898 kb on - strand, within Xcc-8004.28.1 at 24.898 kb on - strand, within Xcc-8004.28.1 at 25.197 kb on + strand, within Xcc-8004.28.1 at 25.198 kb on - strand, within Xcc-8004.28.1 at 25.198 kb on - strand, within Xcc-8004.28.1 at 25.248 kb on + strand, within Xcc-8004.28.1 at 25.248 kb on + strand, within Xcc-8004.28.1 at 25.248 kb on + strand, within Xcc-8004.28.1 at 25.249 kb on - strand, within Xcc-8004.28.1 at 25.249 kb on - strand, within Xcc-8004.28.1 at 25.329 kb on + strand, within Xcc-8004.28.1 at 25.329 kb on + strand, within Xcc-8004.28.1 at 25.329 kb on + strand, within Xcc-8004.28.1 at 25.329 kb on + strand, within Xcc-8004.28.1 at 25.329 kb on + strand, within Xcc-8004.28.1 at 25.330 kb on - strand, within Xcc-8004.28.1 at 25.330 kb on - strand, within Xcc-8004.28.1 at 25.330 kb on - strand, within Xcc-8004.28.1 at 25.330 kb on - strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.350 kb on + strand, within Xcc-8004.28.1 at 25.351 kb on - strand, within Xcc-8004.28.1 at 25.351 kb on - strand, within Xcc-8004.28.1 at 25.592 kb on - strand at 25.592 kb on - strand at 25.624 kb on + strand at 25.624 kb on + strand at 25.625 kb on - strand at 25.625 kb on - strand at 25.759 kb on + strand at 25.760 kb on - strand at 25.760 kb on - strand at 25.841 kb on + strand at 25.947 kb on - strand, within Xcc-8004.29.1 at 25.958 kb on + strand, within Xcc-8004.29.1 at 25.958 kb on + strand, within Xcc-8004.29.1 at 25.958 kb on + strand, within Xcc-8004.29.1 at 25.959 kb on - strand, within Xcc-8004.29.1 at 25.959 kb on - strand, within Xcc-8004.29.1 at 25.959 kb on - strand, within Xcc-8004.29.1 at 25.959 kb on - strand, within Xcc-8004.29.1 at 26.088 kb on + strand, within Xcc-8004.29.1 at 26.088 kb on + strand, within Xcc-8004.29.1 at 26.089 kb on - strand, within Xcc-8004.29.1 at 26.089 kb on - strand, within Xcc-8004.29.1 at 26.089 kb on - strand, within Xcc-8004.29.1 at 26.390 kb on + strand, within Xcc-8004.29.1 at 26.391 kb on - strand, within Xcc-8004.29.1 at 26.585 kb on + strand, within Xcc-8004.29.1 at 26.585 kb on + strand, within Xcc-8004.29.1 at 26.586 kb on - strand, within Xcc-8004.29.1 at 26.586 kb on - strand, within Xcc-8004.29.1 at 26.586 kb on - strand, within Xcc-8004.29.1 at 27.107 kb on + strand at 27.108 kb on - strand at 27.279 kb on + strand, within Xcc-8004.30.1 at 27.279 kb on + strand, within Xcc-8004.30.1 at 27.280 kb on - strand, within Xcc-8004.30.1 at 27.280 kb on - strand, within Xcc-8004.30.1 at 27.362 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.610 kb on + strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.611 kb on - strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.741 kb on + strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.742 kb on - strand, within Xcc-8004.30.1 at 27.847 kb on + strand at 27.847 kb on + strand at 27.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 24,897 + Xcc-8004.28.1 0.58 -0.9 24,897 + Xcc-8004.28.1 0.58 +1.2 24,897 + Xcc-8004.28.1 0.58 +0.4 24,897 + Xcc-8004.28.1 0.58 +0.1 24,897 + Xcc-8004.28.1 0.58 -0.6 24,897 + Xcc-8004.28.1 0.58 +0.1 24,897 + Xcc-8004.28.1 0.58 +1.8 24,897 + Xcc-8004.28.1 0.58 +0.6 24,897 + Xcc-8004.28.1 0.58 -1.0 24,897 + Xcc-8004.28.1 0.58 -0.8 24,897 + Xcc-8004.28.1 0.58 +0.2 24,898 - Xcc-8004.28.1 0.58 -0.3 24,898 - Xcc-8004.28.1 0.58 +0.1 25,197 + Xcc-8004.28.1 0.78 +0.9 25,198 - Xcc-8004.28.1 0.78 +3.4 25,198 - Xcc-8004.28.1 0.78 -0.9 25,248 + Xcc-8004.28.1 0.82 +0.1 25,248 + Xcc-8004.28.1 0.82 -0.8 25,248 + Xcc-8004.28.1 0.82 -1.3 25,249 - Xcc-8004.28.1 0.82 -2.0 25,249 - Xcc-8004.28.1 0.82 -0.9 25,329 + Xcc-8004.28.1 0.87 -0.5 25,329 + Xcc-8004.28.1 0.87 -1.1 25,329 + Xcc-8004.28.1 0.87 +0.4 25,329 + Xcc-8004.28.1 0.87 +0.0 25,329 + Xcc-8004.28.1 0.87 +0.5 25,330 - Xcc-8004.28.1 0.87 -0.4 25,330 - Xcc-8004.28.1 0.87 -0.9 25,330 - Xcc-8004.28.1 0.87 -0.6 25,330 - Xcc-8004.28.1 0.87 -0.9 25,350 + Xcc-8004.28.1 0.88 +0.3 25,350 + Xcc-8004.28.1 0.88 +0.6 25,350 + Xcc-8004.28.1 0.88 -0.4 25,350 + Xcc-8004.28.1 0.88 -0.4 25,350 + Xcc-8004.28.1 0.88 +0.3 25,350 + Xcc-8004.28.1 0.88 -0.9 25,351 - Xcc-8004.28.1 0.88 +0.2 25,351 - Xcc-8004.28.1 0.88 +0.4 25,592 - -0.5 25,592 - +1.3 25,624 + -1.4 25,624 + -2.2 25,625 - -0.4 25,625 - -0.3 25,759 + +1.1 25,760 - +0.0 25,760 - +0.5 25,841 + -1.7 25,947 - Xcc-8004.29.1 0.13 -1.4 25,958 + Xcc-8004.29.1 0.14 -2.0 25,958 + Xcc-8004.29.1 0.14 -0.4 25,958 + Xcc-8004.29.1 0.14 -1.0 25,959 - Xcc-8004.29.1 0.14 -1.0 25,959 - Xcc-8004.29.1 0.14 -0.6 25,959 - Xcc-8004.29.1 0.14 -0.8 25,959 - Xcc-8004.29.1 0.14 -0.8 26,088 + Xcc-8004.29.1 0.24 -0.3 26,088 + Xcc-8004.29.1 0.24 -1.2 26,089 - Xcc-8004.29.1 0.24 +1.6 26,089 - Xcc-8004.29.1 0.24 -2.2 26,089 - Xcc-8004.29.1 0.24 +0.3 26,390 + Xcc-8004.29.1 0.47 -2.0 26,391 - Xcc-8004.29.1 0.47 -0.0 26,585 + Xcc-8004.29.1 0.62 -1.5 26,585 + Xcc-8004.29.1 0.62 -1.9 26,586 - Xcc-8004.29.1 0.62 -1.4 26,586 - Xcc-8004.29.1 0.62 -0.5 26,586 - Xcc-8004.29.1 0.62 -1.7 27,107 + +0.0 27,108 - -0.1 27,279 + Xcc-8004.30.1 0.17 +0.6 27,279 + Xcc-8004.30.1 0.17 -1.8 27,280 - Xcc-8004.30.1 0.17 -1.4 27,280 - Xcc-8004.30.1 0.17 -1.4 27,362 + Xcc-8004.30.1 0.30 +0.0 27,610 + Xcc-8004.30.1 0.67 -1.3 27,610 + Xcc-8004.30.1 0.67 -0.3 27,610 + Xcc-8004.30.1 0.67 +1.8 27,610 + Xcc-8004.30.1 0.67 -1.5 27,610 + Xcc-8004.30.1 0.67 -0.4 27,610 + Xcc-8004.30.1 0.67 +0.0 27,610 + Xcc-8004.30.1 0.67 +1.1 27,610 + Xcc-8004.30.1 0.67 +1.1 27,610 + Xcc-8004.30.1 0.67 -0.1 27,610 + Xcc-8004.30.1 0.67 -2.7 27,611 - Xcc-8004.30.1 0.67 -0.5 27,611 - Xcc-8004.30.1 0.67 +0.5 27,611 - Xcc-8004.30.1 0.67 -0.5 27,611 - Xcc-8004.30.1 0.67 +0.8 27,611 - Xcc-8004.30.1 0.67 -0.4 27,611 - Xcc-8004.30.1 0.67 -1.7 27,611 - Xcc-8004.30.1 0.67 +0.4 27,611 - Xcc-8004.30.1 0.67 -0.5 27,611 - Xcc-8004.30.1 0.67 -1.5 27,741 + Xcc-8004.30.1 0.87 -1.2 27,741 + Xcc-8004.30.1 0.87 -0.7 27,741 + Xcc-8004.30.1 0.87 +1.0 27,741 + Xcc-8004.30.1 0.87 -1.0 27,741 + Xcc-8004.30.1 0.87 +0.4 27,741 + Xcc-8004.30.1 0.87 -0.2 27,741 + Xcc-8004.30.1 0.87 +0.8 27,741 + Xcc-8004.30.1 0.87 +0.2 27,741 + Xcc-8004.30.1 0.87 +0.0 27,741 + Xcc-8004.30.1 0.87 +0.3 27,741 + Xcc-8004.30.1 0.87 +0.2 27,741 + Xcc-8004.30.1 0.87 +0.2 27,741 + Xcc-8004.30.1 0.87 +0.1 27,741 + Xcc-8004.30.1 0.87 -1.1 27,741 + Xcc-8004.30.1 0.87 -0.3 27,741 + Xcc-8004.30.1 0.87 -1.3 27,742 - Xcc-8004.30.1 0.87 +2.4 27,742 - Xcc-8004.30.1 0.87 +0.9 27,742 - Xcc-8004.30.1 0.87 -0.3 27,742 - Xcc-8004.30.1 0.87 +0.6 27,742 - Xcc-8004.30.1 0.87 -0.9 27,742 - Xcc-8004.30.1 0.87 +2.9 27,742 - Xcc-8004.30.1 0.87 -0.1 27,742 - Xcc-8004.30.1 0.87 -2.0 27,742 - Xcc-8004.30.1 0.87 +1.0 27,742 - Xcc-8004.30.1 0.87 +0.6 27,742 - Xcc-8004.30.1 0.87 -0.0 27,742 - Xcc-8004.30.1 0.87 -0.8 27,742 - Xcc-8004.30.1 0.87 -1.0 27,742 - Xcc-8004.30.1 0.87 +0.3 27,742 - Xcc-8004.30.1 0.87 -1.0 27,742 - Xcc-8004.30.1 0.87 +0.0 27,742 - Xcc-8004.30.1 0.87 +0.6 27,847 + +1.5 27,847 + -0.1 27,847 + +0.6
Or see this region's nucleotide sequence