Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.277.1 and Xcc-8004.278.1 are separated by 54 nucleotides Xcc-8004.278.1 and Xcc-8004.279.1 are separated by 386 nucleotides Xcc-8004.279.1 and Xcc-8004.280.1 are separated by 101 nucleotides
Xcc-8004.277.1: Xcc-8004.277.1 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 266,120 to 266,596
Xcc-8004.277.1
Xcc-8004.278.1: Xcc-8004.278.1 - FIG01210164: hypothetical protein, at 266,651 to 267,109
Xcc-8004.278.1
Xcc-8004.279.1: Xcc-8004.279.1 - FIG01210420: hypothetical protein, at 267,496 to 267,816
Xcc-8004.279.1
Xcc-8004.280.1: Xcc-8004.280.1 - 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster, at 267,918 to 268,934
Xcc-8004.280.1
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 266.513 kb on - strand, within Xcc-8004.277.1 at 266.513 kb on - strand, within Xcc-8004.277.1 at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.653 kb on - strand at 266.803 kb on + strand, within Xcc-8004.278.1 at 266.803 kb on + strand, within Xcc-8004.278.1 at 267.198 kb on + strand at 267.220 kb on + strand at 267.285 kb on + strand at 267.285 kb on + strand at 267.285 kb on + strand at 267.286 kb on - strand at 267.286 kb on - strand at 267.286 kb on - strand at 267.429 kb on + strand at 267.439 kb on + strand at 267.458 kb on + strand at 267.458 kb on + strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.667 kb on + strand, within Xcc-8004.279.1 at 267.667 kb on + strand, within Xcc-8004.279.1 at 267.668 kb on - strand, within Xcc-8004.279.1 at 267.668 kb on - strand, within Xcc-8004.279.1 at 267.668 kb on - strand, within Xcc-8004.279.1 at 267.668 kb on - strand, within Xcc-8004.279.1 at 267.718 kb on - strand, within Xcc-8004.279.1 at 267.849 kb on + strand at 267.849 kb on + strand at 267.849 kb on + strand at 267.850 kb on - strand at 267.850 kb on - strand at 267.850 kb on - strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.877 kb on + strand at 267.878 kb on - strand at 267.878 kb on - strand at 267.878 kb on - strand at 267.878 kb on - strand at 267.878 kb on - strand at 267.911 kb on + strand at 267.956 kb on + strand at 267.956 kb on + strand at 267.957 kb on - strand at 267.957 kb on - strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.015 kb on - strand at 268.015 kb on - strand at 268.015 kb on - strand at 268.015 kb on - strand at 268.015 kb on - strand at 268.042 kb on + strand, within Xcc-8004.280.1 at 268.042 kb on + strand, within Xcc-8004.280.1 at 268.043 kb on - strand, within Xcc-8004.280.1 at 268.181 kb on + strand, within Xcc-8004.280.1 at 268.181 kb on + strand, within Xcc-8004.280.1 at 268.181 kb on + strand, within Xcc-8004.280.1 at 268.181 kb on + strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.182 kb on - strand, within Xcc-8004.280.1 at 268.200 kb on + strand, within Xcc-8004.280.1 at 268.201 kb on - strand, within Xcc-8004.280.1 at 268.201 kb on - strand, within Xcc-8004.280.1 at 268.348 kb on - strand, within Xcc-8004.280.1 at 268.348 kb on - strand, within Xcc-8004.280.1 at 268.377 kb on - strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.527 kb on + strand, within Xcc-8004.280.1 at 268.528 kb on - strand, within Xcc-8004.280.1 at 268.528 kb on - strand, within Xcc-8004.280.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 266,513 - Xcc-8004.277.1 0.82 -0.3 266,513 - Xcc-8004.277.1 0.82 +1.1 266,607 + -1.9 266,607 + -0.3 266,607 + -0.6 266,607 + -0.0 266,607 + +1.0 266,607 + -1.5 266,607 + -0.2 266,608 - -0.1 266,608 - -1.5 266,608 - +1.6 266,608 - +0.8 266,608 - -0.8 266,608 - -1.0 266,652 + +1.1 266,652 + +0.8 266,652 + -0.4 266,652 + -1.1 266,652 + -0.7 266,652 + -0.2 266,653 - +0.5 266,803 + Xcc-8004.278.1 0.33 +1.6 266,803 + Xcc-8004.278.1 0.33 +1.9 267,198 + -1.3 267,220 + -0.4 267,285 + +3.0 267,285 + +0.8 267,285 + -0.4 267,286 - -0.8 267,286 - -1.9 267,286 - -0.5 267,429 + +1.1 267,439 + -0.4 267,458 + +0.6 267,458 + -1.8 267,459 - +0.8 267,459 - -0.4 267,459 - +0.5 267,459 - -0.3 267,459 - -0.9 267,495 + +1.0 267,495 + -0.4 267,495 + -0.6 267,495 + +0.1 267,495 + -1.0 267,495 + -0.7 267,495 + -1.2 267,495 + +1.6 267,495 + +0.9 267,496 - -0.4 267,496 - +1.6 267,496 - -1.7 267,496 - -0.5 267,496 - -0.4 267,667 + Xcc-8004.279.1 0.53 -0.4 267,667 + Xcc-8004.279.1 0.53 -0.4 267,668 - Xcc-8004.279.1 0.54 -0.2 267,668 - Xcc-8004.279.1 0.54 -0.9 267,668 - Xcc-8004.279.1 0.54 -0.9 267,668 - Xcc-8004.279.1 0.54 -0.8 267,718 - Xcc-8004.279.1 0.69 -1.2 267,849 + +0.1 267,849 + +1.2 267,849 + -1.7 267,850 - -1.5 267,850 - -0.9 267,850 - -1.9 267,877 + -0.1 267,877 + +0.1 267,877 + -0.7 267,877 + -0.5 267,877 + +0.3 267,877 + +0.6 267,877 + +1.2 267,877 + +0.2 267,877 + -0.2 267,878 - +2.0 267,878 - +0.2 267,878 - -0.6 267,878 - -1.5 267,878 - -0.9 267,911 + -1.1 267,956 + -0.9 267,956 + -0.5 267,957 - +0.1 267,957 - -0.0 268,014 + +0.1 268,014 + +0.2 268,014 + +0.1 268,014 + -0.7 268,015 - +0.6 268,015 - +0.2 268,015 - -1.4 268,015 - +0.9 268,015 - -0.0 268,042 + Xcc-8004.280.1 0.12 +0.6 268,042 + Xcc-8004.280.1 0.12 +0.6 268,043 - Xcc-8004.280.1 0.12 +0.4 268,181 + Xcc-8004.280.1 0.26 -0.9 268,181 + Xcc-8004.280.1 0.26 +0.3 268,181 + Xcc-8004.280.1 0.26 +0.2 268,181 + Xcc-8004.280.1 0.26 +0.3 268,182 - Xcc-8004.280.1 0.26 +0.2 268,182 - Xcc-8004.280.1 0.26 +0.6 268,182 - Xcc-8004.280.1 0.26 -1.2 268,182 - Xcc-8004.280.1 0.26 +0.3 268,182 - Xcc-8004.280.1 0.26 -1.5 268,182 - Xcc-8004.280.1 0.26 -0.6 268,200 + Xcc-8004.280.1 0.28 -1.7 268,201 - Xcc-8004.280.1 0.28 +1.6 268,201 - Xcc-8004.280.1 0.28 +1.1 268,348 - Xcc-8004.280.1 0.42 -0.4 268,348 - Xcc-8004.280.1 0.42 -0.0 268,377 - Xcc-8004.280.1 0.45 -0.7 268,527 + Xcc-8004.280.1 0.60 +0.6 268,527 + Xcc-8004.280.1 0.60 +0.4 268,527 + Xcc-8004.280.1 0.60 -0.7 268,527 + Xcc-8004.280.1 0.60 -1.4 268,527 + Xcc-8004.280.1 0.60 -0.8 268,527 + Xcc-8004.280.1 0.60 -0.4 268,527 + Xcc-8004.280.1 0.60 +0.6 268,528 - Xcc-8004.280.1 0.60 +0.2 268,528 - Xcc-8004.280.1 0.60 +0.4
Or see this region's nucleotide sequence