Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2782.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2781.1 and Xcc-8004.2782.1 are separated by 143 nucleotidesXcc-8004.2782.1 and Xcc-8004.2783.1 are separated by 347 nucleotidesXcc-8004.2783.1 and Xcc-8004.2784.1 are separated by 448 nucleotides Xcc-8004.2781.1: Xcc-8004.2781.1 - Flagellar hook protein FlgE, at 2,694,278 to 2,695,501 Xcc-8004.2781.1 Xcc-8004.2782.1: Xcc-8004.2782.1 - Flagellar basal-body rod protein FlgF, at 2,695,645 to 2,696,400 Xcc-8004.2782.1 Xcc-8004.2783.1: Xcc-8004.2783.1 - FIG01209963: hypothetical protein, at 2,696,748 to 2,696,906 Xcc-8004.2783.1 Xcc-8004.2784.1: Xcc-8004.2784.1 - Flagellar basal-body rod protein FlgG, at 2,697,355 to 2,698,140 Xcc-8004.2784.1 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2694.648 kb on + strand, within Xcc-8004.2781.1at 2694.648 kb on + strand, within Xcc-8004.2781.1at 2694.648 kb on + strand, within Xcc-8004.2781.1at 2694.649 kb on - strand, within Xcc-8004.2781.1at 2694.649 kb on - strand, within Xcc-8004.2781.1at 2694.649 kb on - strand, within Xcc-8004.2781.1at 2694.649 kb on - strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.824 kb on + strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.825 kb on - strand, within Xcc-8004.2781.1at 2694.854 kb on + strand, within Xcc-8004.2781.1at 2694.855 kb on - strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.890 kb on + strand, within Xcc-8004.2781.1at 2694.891 kb on - strand, within Xcc-8004.2781.1at 2694.891 kb on - strand, within Xcc-8004.2781.1at 2694.891 kb on - strand, within Xcc-8004.2781.1at 2694.891 kb on - strand, within Xcc-8004.2781.1at 2694.891 kb on - strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.935 kb on + strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2694.936 kb on - strand, within Xcc-8004.2781.1at 2695.097 kb on + strand, within Xcc-8004.2781.1at 2695.098 kb on - strand, within Xcc-8004.2781.1at 2695.139 kb on + strand, within Xcc-8004.2781.1at 2695.199 kb on + strand, within Xcc-8004.2781.1at 2695.200 kb on - strand, within Xcc-8004.2781.1at 2695.301 kb on + strand, within Xcc-8004.2781.1at 2695.301 kb on + strand, within Xcc-8004.2781.1at 2695.301 kb on + strand, within Xcc-8004.2781.1at 2695.301 kb on + strand, within Xcc-8004.2781.1at 2695.301 kb on + strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.302 kb on - strand, within Xcc-8004.2781.1at 2695.430 kb on - strandat 2695.430 kb on - strandat 2695.430 kb on - strandat 2695.430 kb on - strandat 2695.430 kb on - strandat 2695.492 kb on + strandat 2695.492 kb on + strandat 2695.492 kb on + strandat 2695.492 kb on + strandat 2695.493 kb on - strandat 2695.493 kb on - strandat 2695.493 kb on - strandat 2695.493 kb on - strandat 2695.493 kb on - strandat 2695.499 kb on + strandat 2695.499 kb on + strandat 2695.500 kb on - strandat 2695.500 kb on - strandat 2695.500 kb on - strandat 2695.526 kb on + strandat 2695.527 kb on - strandat 2695.536 kb on + strandat 2695.536 kb on + strandat 2695.536 kb on + strandat 2695.536 kb on + strandat 2695.536 kb on + strandat 2695.536 kb on + strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.571 kb on + strandat 2695.660 kb on + strandat 2695.660 kb on + strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.661 kb on - strandat 2695.735 kb on - strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.939 kb on + strand, within Xcc-8004.2782.1at 2695.948 kb on - strand, within Xcc-8004.2782.1at 2696.193 kb on + strand, within Xcc-8004.2782.1at 2696.193 kb on + strand, within Xcc-8004.2782.1at 2696.193 kb on + strand, within Xcc-8004.2782.1at 2696.193 kb on + strand, within Xcc-8004.2782.1at 2696.194 kb on - strand, within Xcc-8004.2782.1at 2696.194 kb on - strand, within Xcc-8004.2782.1at 2696.194 kb on - strand, within Xcc-8004.2782.1at 2696.544 kb on + strandat 2696.544 kb on + strandat 2696.544 kb on + strandat 2696.544 kb on + strandat 2696.545 kb on - strandat 2696.663 kb on + strandat 2696.663 kb on + strandat 2696.663 kb on + strandat 2696.664 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.732 kb on - strandat 2696.826 kb on + strand, within Xcc-8004.2783.1at 2696.827 kb on - strand, within Xcc-8004.2783.1at 2696.827 kb on - strand, within Xcc-8004.2783.1at 2696.844 kb on + strand, within Xcc-8004.2783.1at 2696.845 kb on - strand, within Xcc-8004.2783.1at 2697.003 kb on + strandat 2697.004 kb on - strandat 2697.004 kb on - strandat 2697.004 kb on - strandat 2697.148 kb on + strandat 2697.148 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.303 kb on + strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.304 kb on - strandat 2697.305 kb on + strandat 2697.305 kb on + strandat 2697.305 kb on + strandat 2697.305 kb on + strandat 2697.306 kb on - strandat 2697.306 kb on - strandat 2697.306 kb on - strandat 2697.306 kb on - strandat 2697.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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2,694,648 + Xcc-8004.2781.1 0.30 -0.4
2,694,648 + Xcc-8004.2781.1 0.30 +1.4
2,694,648 + Xcc-8004.2781.1 0.30 +1.7
2,694,649 - Xcc-8004.2781.1 0.30 +0.7
2,694,649 - Xcc-8004.2781.1 0.30 +1.1
2,694,649 - Xcc-8004.2781.1 0.30 +0.9
2,694,649 - Xcc-8004.2781.1 0.30 -0.3
2,694,824 + Xcc-8004.2781.1 0.45 -0.7
2,694,824 + Xcc-8004.2781.1 0.45 +0.7
2,694,824 + Xcc-8004.2781.1 0.45 +1.0
2,694,824 + Xcc-8004.2781.1 0.45 -0.1
2,694,824 + Xcc-8004.2781.1 0.45 +0.1
2,694,824 + Xcc-8004.2781.1 0.45 +0.6
2,694,824 + Xcc-8004.2781.1 0.45 -1.8
2,694,824 + Xcc-8004.2781.1 0.45 -1.4
2,694,824 + Xcc-8004.2781.1 0.45 +1.2
2,694,824 + Xcc-8004.2781.1 0.45 -0.3
2,694,824 + Xcc-8004.2781.1 0.45 -0.3
2,694,824 + Xcc-8004.2781.1 0.45 -0.3
2,694,824 + Xcc-8004.2781.1 0.45 +0.3
2,694,824 + Xcc-8004.2781.1 0.45 +1.6
2,694,825 - Xcc-8004.2781.1 0.45 +0.9
2,694,825 - Xcc-8004.2781.1 0.45 -0.5
2,694,825 - Xcc-8004.2781.1 0.45 +0.9
2,694,825 - Xcc-8004.2781.1 0.45 +0.7
2,694,825 - Xcc-8004.2781.1 0.45 -0.5
2,694,825 - Xcc-8004.2781.1 0.45 -2.3
2,694,825 - Xcc-8004.2781.1 0.45 +0.0
2,694,825 - Xcc-8004.2781.1 0.45 -0.7
2,694,854 + Xcc-8004.2781.1 0.47 +0.4
2,694,855 - Xcc-8004.2781.1 0.47 +0.0
2,694,890 + Xcc-8004.2781.1 0.50 -0.9
2,694,890 + Xcc-8004.2781.1 0.50 +1.7
2,694,890 + Xcc-8004.2781.1 0.50 +0.7
2,694,890 + Xcc-8004.2781.1 0.50 +1.7
2,694,890 + Xcc-8004.2781.1 0.50 +0.2
2,694,890 + Xcc-8004.2781.1 0.50 +0.9
2,694,890 + Xcc-8004.2781.1 0.50 +0.7
2,694,890 + Xcc-8004.2781.1 0.50 +0.2
2,694,891 - Xcc-8004.2781.1 0.50 +2.6
2,694,891 - Xcc-8004.2781.1 0.50 -0.2
2,694,891 - Xcc-8004.2781.1 0.50 +1.0
2,694,891 - Xcc-8004.2781.1 0.50 -0.5
2,694,891 - Xcc-8004.2781.1 0.50 -0.8
2,694,935 + Xcc-8004.2781.1 0.54 -0.4
2,694,935 + Xcc-8004.2781.1 0.54 +0.0
2,694,935 + Xcc-8004.2781.1 0.54 +0.6
2,694,935 + Xcc-8004.2781.1 0.54 +1.5
2,694,935 + Xcc-8004.2781.1 0.54 +0.7
2,694,935 + Xcc-8004.2781.1 0.54 -1.2
2,694,935 + Xcc-8004.2781.1 0.54 +0.6
2,694,935 + Xcc-8004.2781.1 0.54 +0.0
2,694,935 + Xcc-8004.2781.1 0.54 +1.2
2,694,935 + Xcc-8004.2781.1 0.54 -0.7
2,694,935 + Xcc-8004.2781.1 0.54 +0.3
2,694,935 + Xcc-8004.2781.1 0.54 +0.7
2,694,936 - Xcc-8004.2781.1 0.54 +0.8
2,694,936 - Xcc-8004.2781.1 0.54 +0.6
2,694,936 - Xcc-8004.2781.1 0.54 -0.3
2,694,936 - Xcc-8004.2781.1 0.54 +0.6
2,694,936 - Xcc-8004.2781.1 0.54 +1.5
2,694,936 - Xcc-8004.2781.1 0.54 -0.1
2,694,936 - Xcc-8004.2781.1 0.54 +0.3
2,694,936 - Xcc-8004.2781.1 0.54 +0.2
2,694,936 - Xcc-8004.2781.1 0.54 -0.1
2,694,936 - Xcc-8004.2781.1 0.54 +0.7
2,694,936 - Xcc-8004.2781.1 0.54 -1.0
2,694,936 - Xcc-8004.2781.1 0.54 -1.0
2,694,936 - Xcc-8004.2781.1 0.54 +1.4
2,694,936 - Xcc-8004.2781.1 0.54 +0.1
2,694,936 - Xcc-8004.2781.1 0.54 +2.3
2,695,097 + Xcc-8004.2781.1 0.67 -0.2
2,695,098 - Xcc-8004.2781.1 0.67 +0.4
2,695,139 + Xcc-8004.2781.1 0.70 +0.0
2,695,199 + Xcc-8004.2781.1 0.75 -0.3
2,695,200 - Xcc-8004.2781.1 0.75 -0.2
2,695,301 + Xcc-8004.2781.1 0.84 -0.3
2,695,301 + Xcc-8004.2781.1 0.84 -2.1
2,695,301 + Xcc-8004.2781.1 0.84 -0.4
2,695,301 + Xcc-8004.2781.1 0.84 +1.7
2,695,301 + Xcc-8004.2781.1 0.84 -0.7
2,695,302 - Xcc-8004.2781.1 0.84 +1.3
2,695,302 - Xcc-8004.2781.1 0.84 -0.1
2,695,302 - Xcc-8004.2781.1 0.84 +0.2
2,695,302 - Xcc-8004.2781.1 0.84 +0.3
2,695,302 - Xcc-8004.2781.1 0.84 -1.1
2,695,302 - Xcc-8004.2781.1 0.84 +0.6
2,695,302 - Xcc-8004.2781.1 0.84 -1.6
2,695,430 - +0.7
2,695,430 - -2.6
2,695,430 - +0.9
2,695,430 - +1.6
2,695,430 - +0.3
2,695,492 + -0.2
2,695,492 + -0.7
2,695,492 + -0.4
2,695,492 + +0.3
2,695,493 - -0.4
2,695,493 - -0.8
2,695,493 - +0.9
2,695,493 - +0.6
2,695,493 - -0.4
2,695,499 + +0.6
2,695,499 + +0.4
2,695,500 - +0.1
2,695,500 - +0.2
2,695,500 - -0.7
2,695,526 + +0.3
2,695,527 - -0.3
2,695,536 + -0.1
2,695,536 + +0.9
2,695,536 + -0.3
2,695,536 + +0.2
2,695,536 + -0.5
2,695,536 + +0.7
2,695,537 - -0.3
2,695,537 - +1.3
2,695,537 - +0.7
2,695,537 - +0.7
2,695,537 - -0.4
2,695,537 - -1.6
2,695,571 + +1.1
2,695,660 + -0.2
2,695,660 + -1.0
2,695,661 - -1.0
2,695,661 - -0.9
2,695,661 - +0.5
2,695,661 - +0.1
2,695,661 - +0.5
2,695,661 - -0.5
2,695,661 - +0.6
2,695,735 - Xcc-8004.2782.1 0.12 -2.1
2,695,939 + Xcc-8004.2782.1 0.39 -0.1
2,695,939 + Xcc-8004.2782.1 0.39 +0.2
2,695,939 + Xcc-8004.2782.1 0.39 +0.4
2,695,939 + Xcc-8004.2782.1 0.39 +0.9
2,695,939 + Xcc-8004.2782.1 0.39 +0.0
2,695,939 + Xcc-8004.2782.1 0.39 +1.0
2,695,948 - Xcc-8004.2782.1 0.40 +0.3
2,696,193 + Xcc-8004.2782.1 0.72 +0.3
2,696,193 + Xcc-8004.2782.1 0.72 -0.8
2,696,193 + Xcc-8004.2782.1 0.72 -0.6
2,696,193 + Xcc-8004.2782.1 0.72 +1.7
2,696,194 - Xcc-8004.2782.1 0.73 +0.9
2,696,194 - Xcc-8004.2782.1 0.73 +1.7
2,696,194 - Xcc-8004.2782.1 0.73 -0.8
2,696,544 + +0.7
2,696,544 + +1.2
2,696,544 + -0.1
2,696,544 + -1.1
2,696,545 - +0.6
2,696,663 + -0.5
2,696,663 + -1.4
2,696,663 + -2.7
2,696,664 - +0.4
2,696,732 - -0.1
2,696,732 - +0.7
2,696,732 - +0.5
2,696,732 - +1.0
2,696,732 - +1.2
2,696,732 - +0.3
2,696,732 - +1.3
2,696,732 - +2.3
2,696,826 + Xcc-8004.2783.1 0.49 +0.2
2,696,827 - Xcc-8004.2783.1 0.50 +0.2
2,696,827 - Xcc-8004.2783.1 0.50 +2.1
2,696,844 + Xcc-8004.2783.1 0.60 +0.2
2,696,845 - Xcc-8004.2783.1 0.61 -0.7
2,697,003 + +0.3
2,697,004 - -0.8
2,697,004 - +0.3
2,697,004 - +0.7
2,697,148 + +1.0
2,697,148 + -0.0
2,697,303 + +0.0
2,697,303 + -2.4
2,697,303 + -1.0
2,697,303 + +0.5
2,697,303 + -1.8
2,697,303 + +1.7
2,697,303 + -0.6
2,697,303 + +0.9
2,697,303 + +0.4
2,697,303 + +0.7
2,697,303 + +1.9
2,697,303 + -0.3
2,697,303 + -0.4
2,697,303 + -1.2
2,697,303 + +2.3
2,697,303 + -1.6
2,697,303 + +0.2
2,697,303 + +1.5
2,697,304 - -0.8
2,697,304 - -0.7
2,697,304 - +0.5
2,697,304 - -3.0
2,697,304 - -0.7
2,697,304 - -0.6
2,697,304 - +0.2
2,697,304 - -0.5
2,697,304 - +1.4
2,697,304 - +0.0
2,697,304 - +0.4
2,697,304 - +1.1
2,697,304 - -1.2
2,697,304 - +0.3
2,697,304 - -0.8
2,697,304 - +0.1
2,697,305 + +0.1
2,697,305 + -0.7
2,697,305 + +1.1
2,697,305 + +0.3
2,697,306 - +0.1
2,697,306 - -1.3
2,697,306 - +0.8
2,697,306 - +0.7
2,697,306 - +1.1

Or see this region's nucleotide sequence