Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.268.1 and Xcc-8004.269.1 are separated by 88 nucleotides Xcc-8004.269.1 and Xcc-8004.270.1 are separated by 109 nucleotides Xcc-8004.270.1 and Xcc-8004.271.1 are separated by 17 nucleotides
Xcc-8004.268.1: Xcc-8004.268.1 - FIG01210356: hypothetical protein, at 259,728 to 260,150
Xcc-8004.268.1
Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676
Xcc-8004.269.1
Xcc-8004.270.1: Xcc-8004.270.1 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 260,786 to 261,298
Xcc-8004.270.1
Xcc-8004.271.1: Xcc-8004.271.1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 261,316 to 262,341
Xcc-8004.271.1
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.942 kb on - strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.148 kb on + strand at 260.148 kb on + strand at 260.148 kb on + strand at 260.149 kb on - strand at 260.149 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.723 kb on - strand at 260.781 kb on + strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.864 kb on + strand, within Xcc-8004.270.1 at 260.865 kb on - strand, within Xcc-8004.270.1 at 261.035 kb on + strand, within Xcc-8004.270.1 at 261.035 kb on + strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.194 kb on + strand, within Xcc-8004.270.1 at 261.194 kb on + strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.225 kb on - strand, within Xcc-8004.270.1 at 261.225 kb on - strand, within Xcc-8004.270.1 at 261.296 kb on + strand at 261.296 kb on + strand at 261.297 kb on - strand at 261.297 kb on - strand at 261.297 kb on - strand at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.851 kb on - strand, within Xcc-8004.271.1 at 261.851 kb on - strand, within Xcc-8004.271.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 259,839 + Xcc-8004.268.1 0.26 -0.5 259,839 + Xcc-8004.268.1 0.26 +0.1 259,899 + Xcc-8004.268.1 0.40 -0.4 259,899 + Xcc-8004.268.1 0.40 -0.2 259,899 + Xcc-8004.268.1 0.40 -0.4 259,899 + Xcc-8004.268.1 0.40 +0.2 259,899 + Xcc-8004.268.1 0.40 +0.5 259,899 + Xcc-8004.268.1 0.40 -1.0 259,899 + Xcc-8004.268.1 0.40 +0.7 259,899 + Xcc-8004.268.1 0.40 -0.4 259,899 + Xcc-8004.268.1 0.40 -1.0 259,899 + Xcc-8004.268.1 0.40 -0.4 259,900 - Xcc-8004.268.1 0.41 -0.3 259,900 - Xcc-8004.268.1 0.41 -0.6 259,900 - Xcc-8004.268.1 0.41 +0.2 259,900 - Xcc-8004.268.1 0.41 +0.8 259,900 - Xcc-8004.268.1 0.41 -1.8 259,900 - Xcc-8004.268.1 0.41 +0.2 259,900 - Xcc-8004.268.1 0.41 -2.2 259,900 - Xcc-8004.268.1 0.41 -0.2 259,900 - Xcc-8004.268.1 0.41 -0.6 259,900 - Xcc-8004.268.1 0.41 +0.6 259,900 - Xcc-8004.268.1 0.41 +0.9 259,942 - Xcc-8004.268.1 0.51 +0.4 260,042 + Xcc-8004.268.1 0.74 +1.4 260,042 + Xcc-8004.268.1 0.74 +0.6 260,042 + Xcc-8004.268.1 0.74 +0.0 260,043 - Xcc-8004.268.1 0.74 +0.8 260,043 - Xcc-8004.268.1 0.74 -0.3 260,043 - Xcc-8004.268.1 0.74 -1.0 260,043 - Xcc-8004.268.1 0.74 +1.5 260,043 - Xcc-8004.268.1 0.74 -0.5 260,148 + -0.6 260,148 + +0.6 260,148 + +0.2 260,149 - -0.7 260,149 - +0.6 260,191 - +0.6 260,191 - -0.1 260,191 - -1.2 260,608 + Xcc-8004.269.1 0.84 +1.3 260,608 + Xcc-8004.269.1 0.84 -0.8 260,608 + Xcc-8004.269.1 0.84 -1.2 260,608 + Xcc-8004.269.1 0.84 -1.8 260,608 + Xcc-8004.269.1 0.84 +0.8 260,609 - Xcc-8004.269.1 0.84 -0.7 260,609 - Xcc-8004.269.1 0.84 -0.3 260,609 - Xcc-8004.269.1 0.84 +0.5 260,723 - -0.4 260,781 + +1.0 260,782 - -0.4 260,782 - -2.4 260,782 - -2.2 260,782 - -1.4 260,782 - +0.6 260,864 + Xcc-8004.270.1 0.15 -1.4 260,865 - Xcc-8004.270.1 0.15 -1.4 261,035 + Xcc-8004.270.1 0.49 +0.1 261,035 + Xcc-8004.270.1 0.49 -0.2 261,036 - Xcc-8004.270.1 0.49 -0.4 261,036 - Xcc-8004.270.1 0.49 -1.7 261,036 - Xcc-8004.270.1 0.49 -1.2 261,140 + Xcc-8004.270.1 0.69 +1.0 261,140 + Xcc-8004.270.1 0.69 -1.1 261,140 + Xcc-8004.270.1 0.69 -2.2 261,140 + Xcc-8004.270.1 0.69 -1.0 261,140 + Xcc-8004.270.1 0.69 -1.7 261,140 + Xcc-8004.270.1 0.69 -1.7 261,141 - Xcc-8004.270.1 0.69 -1.2 261,141 - Xcc-8004.270.1 0.69 -2.2 261,141 - Xcc-8004.270.1 0.69 -1.0 261,141 - Xcc-8004.270.1 0.69 -0.4 261,194 + Xcc-8004.270.1 0.80 -0.4 261,194 + Xcc-8004.270.1 0.80 -1.9 261,195 - Xcc-8004.270.1 0.80 -1.0 261,195 - Xcc-8004.270.1 0.80 -0.1 261,195 - Xcc-8004.270.1 0.80 -1.8 261,224 + Xcc-8004.270.1 0.85 -2.4 261,224 + Xcc-8004.270.1 0.85 -0.4 261,224 + Xcc-8004.270.1 0.85 -1.2 261,225 - Xcc-8004.270.1 0.86 -1.0 261,225 - Xcc-8004.270.1 0.86 -2.2 261,296 + +0.1 261,296 + -0.3 261,297 - -1.7 261,297 - -1.7 261,297 - -0.4 261,473 - Xcc-8004.271.1 0.15 -1.1 261,473 - Xcc-8004.271.1 0.15 -2.5 261,473 - Xcc-8004.271.1 0.15 -2.2 261,850 + Xcc-8004.271.1 0.52 -3.0 261,850 + Xcc-8004.271.1 0.52 -1.7 261,850 + Xcc-8004.271.1 0.52 -1.4 261,851 - Xcc-8004.271.1 0.52 -1.4 261,851 - Xcc-8004.271.1 0.52 -2.2
Or see this region's nucleotide sequence