Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2646.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2645.1 and Xcc-8004.2646.1 overlap by 8 nucleotidesXcc-8004.2646.1 and Xcc-8004.2647.1 overlap by 4 nucleotidesXcc-8004.2647.1 and Xcc-8004.2648.1 are separated by 127 nucleotides Xcc-8004.2645.1: Xcc-8004.2645.1 - probable phage replication protein NMA0782, at 2,541,789 to 2,542,898 Xcc-8004.2645.1 Xcc-8004.2646.1: Xcc-8004.2646.1 - hypothetical protein, at 2,542,891 to 2,543,073 Xcc-8004.2646.1 Xcc-8004.2647.1: Xcc-8004.2647.1 - hypothetical protein, at 2,543,070 to 2,543,342 Xcc-8004.2647.1 Xcc-8004.2648.1: Xcc-8004.2648.1 - Phage-related protein, at 2,543,470 to 2,544,018 Xcc-8004.2648.1 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1 2at 2542.024 kb on + strand, within Xcc-8004.2645.1at 2542.229 kb on + strand, within Xcc-8004.2645.1at 2542.237 kb on + strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.352 kb on - strand, within Xcc-8004.2645.1at 2542.500 kb on - strand, within Xcc-8004.2645.1at 2542.510 kb on + strand, within Xcc-8004.2645.1at 2542.510 kb on + strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.782 kb on + strand, within Xcc-8004.2645.1at 2542.783 kb on - strand, within Xcc-8004.2645.1at 2542.904 kb on + strandat 2542.905 kb on - strandat 2542.905 kb on - strandat 2542.905 kb on - strandat 2542.905 kb on - strandat 2543.039 kb on + strand, within Xcc-8004.2646.1at 2543.039 kb on + strand, within Xcc-8004.2646.1at 2543.039 kb on + strand, within Xcc-8004.2646.1at 2543.039 kb on + strand, within Xcc-8004.2646.1at 2543.040 kb on - strand, within Xcc-8004.2646.1at 2543.040 kb on - strand, within Xcc-8004.2646.1at 2543.089 kb on + strandat 2543.090 kb on - strandat 2543.095 kb on + strandat 2543.145 kb on + strand, within Xcc-8004.2647.1at 2543.145 kb on + strand, within Xcc-8004.2647.1at 2543.146 kb on - strand, within Xcc-8004.2647.1at 2543.146 kb on - strand, within Xcc-8004.2647.1at 2543.146 kb on - strand, within Xcc-8004.2647.1at 2543.161 kb on + strand, within Xcc-8004.2647.1at 2543.161 kb on + strand, within Xcc-8004.2647.1at 2543.162 kb on - strand, within Xcc-8004.2647.1at 2543.197 kb on + strand, within Xcc-8004.2647.1at 2543.197 kb on + strand, within Xcc-8004.2647.1at 2543.198 kb on - strand, within Xcc-8004.2647.1at 2543.431 kb on + strandat 2543.432 kb on - strandat 2543.432 kb on - strandat 2543.432 kb on - strandat 2543.481 kb on - strandat 2543.765 kb on + strand, within Xcc-8004.2648.1at 2543.765 kb on + strand, within Xcc-8004.2648.1at 2543.822 kb on + strand, within Xcc-8004.2648.1at 2543.822 kb on + strand, within Xcc-8004.2648.1at 2543.822 kb on + strand, within Xcc-8004.2648.1at 2543.823 kb on - strand, within Xcc-8004.2648.1at 2543.838 kb on - strand, within Xcc-8004.2648.1at 2543.838 kb on - strand, within Xcc-8004.2648.1at 2543.838 kb on - strand, within Xcc-8004.2648.1at 2543.838 kb on - strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.839 kb on + strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.840 kb on - strand, within Xcc-8004.2648.1at 2543.844 kb on + strand, within Xcc-8004.2648.1at 2543.952 kb on + strand, within Xcc-8004.2648.1at 2543.952 kb on + strand, within Xcc-8004.2648.1at 2543.952 kb on + strand, within Xcc-8004.2648.1at 2543.952 kb on + strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.953 kb on - strand, within Xcc-8004.2648.1at 2543.965 kb on + strandat 2543.965 kb on + strandat 2543.966 kb on - strandat 2543.966 kb on - strandat 2543.966 kb on - strandat 2544.016 kb on + strandat 2544.016 kb on + strandat 2544.016 kb on + strandat 2544.016 kb on + strandat 2544.016 kb on + strandat 2544.017 kb on - strandat 2544.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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2,542,024 + Xcc-8004.2645.1 0.21 -1.1
2,542,229 + Xcc-8004.2645.1 0.40 -0.2
2,542,237 + Xcc-8004.2645.1 0.40 -2.2
2,542,238 - Xcc-8004.2645.1 0.40 -2.2
2,542,238 - Xcc-8004.2645.1 0.40 -0.8
2,542,238 - Xcc-8004.2645.1 0.40 -0.2
2,542,352 - Xcc-8004.2645.1 0.51 +1.0
2,542,500 - Xcc-8004.2645.1 0.64 -0.9
2,542,510 + Xcc-8004.2645.1 0.65 -1.0
2,542,510 + Xcc-8004.2645.1 0.65 -1.2
2,542,604 - Xcc-8004.2645.1 0.73 -0.4
2,542,604 - Xcc-8004.2645.1 0.73 +0.8
2,542,604 - Xcc-8004.2645.1 0.73 +0.3
2,542,746 + Xcc-8004.2645.1 0.86 -0.3
2,542,746 + Xcc-8004.2645.1 0.86 -1.2
2,542,746 + Xcc-8004.2645.1 0.86 -0.1
2,542,746 + Xcc-8004.2645.1 0.86 -0.6
2,542,747 - Xcc-8004.2645.1 0.86 +0.6
2,542,747 - Xcc-8004.2645.1 0.86 -0.8
2,542,747 - Xcc-8004.2645.1 0.86 +0.2
2,542,747 - Xcc-8004.2645.1 0.86 -1.2
2,542,782 + Xcc-8004.2645.1 0.89 -0.1
2,542,783 - Xcc-8004.2645.1 0.90 +0.9
2,542,904 + -1.9
2,542,905 - +0.4
2,542,905 - +0.6
2,542,905 - +0.8
2,542,905 - +1.5
2,543,039 + Xcc-8004.2646.1 0.81 -0.1
2,543,039 + Xcc-8004.2646.1 0.81 -1.2
2,543,039 + Xcc-8004.2646.1 0.81 -1.3
2,543,039 + Xcc-8004.2646.1 0.81 -0.2
2,543,040 - Xcc-8004.2646.1 0.81 -0.0
2,543,040 - Xcc-8004.2646.1 0.81 -0.8
2,543,089 + -1.8
2,543,090 - -1.0
2,543,095 + -1.9
2,543,145 + Xcc-8004.2647.1 0.27 -0.0
2,543,145 + Xcc-8004.2647.1 0.27 +0.1
2,543,146 - Xcc-8004.2647.1 0.28 -0.0
2,543,146 - Xcc-8004.2647.1 0.28 -1.7
2,543,146 - Xcc-8004.2647.1 0.28 -0.2
2,543,161 + Xcc-8004.2647.1 0.33 -1.0
2,543,161 + Xcc-8004.2647.1 0.33 +0.3
2,543,162 - Xcc-8004.2647.1 0.34 +0.5
2,543,197 + Xcc-8004.2647.1 0.47 +0.1
2,543,197 + Xcc-8004.2647.1 0.47 +0.1
2,543,198 - Xcc-8004.2647.1 0.47 -1.1
2,543,431 + +0.6
2,543,432 - +0.3
2,543,432 - -0.8
2,543,432 - +0.5
2,543,481 - -2.0
2,543,765 + Xcc-8004.2648.1 0.54 -0.5
2,543,765 + Xcc-8004.2648.1 0.54 -0.2
2,543,822 + Xcc-8004.2648.1 0.64 +0.4
2,543,822 + Xcc-8004.2648.1 0.64 -0.6
2,543,822 + Xcc-8004.2648.1 0.64 +0.6
2,543,823 - Xcc-8004.2648.1 0.64 +1.4
2,543,838 - Xcc-8004.2648.1 0.67 -0.2
2,543,838 - Xcc-8004.2648.1 0.67 -0.5
2,543,838 - Xcc-8004.2648.1 0.67 -0.3
2,543,838 - Xcc-8004.2648.1 0.67 -0.5
2,543,839 + Xcc-8004.2648.1 0.67 -0.0
2,543,839 + Xcc-8004.2648.1 0.67 +0.1
2,543,839 + Xcc-8004.2648.1 0.67 -0.4
2,543,839 + Xcc-8004.2648.1 0.67 -1.3
2,543,839 + Xcc-8004.2648.1 0.67 -0.6
2,543,839 + Xcc-8004.2648.1 0.67 +0.5
2,543,839 + Xcc-8004.2648.1 0.67 -0.8
2,543,839 + Xcc-8004.2648.1 0.67 -0.2
2,543,839 + Xcc-8004.2648.1 0.67 -1.8
2,543,839 + Xcc-8004.2648.1 0.67 +2.2
2,543,840 - Xcc-8004.2648.1 0.67 -1.7
2,543,840 - Xcc-8004.2648.1 0.67 +0.1
2,543,840 - Xcc-8004.2648.1 0.67 -1.0
2,543,840 - Xcc-8004.2648.1 0.67 +0.8
2,543,840 - Xcc-8004.2648.1 0.67 -1.2
2,543,840 - Xcc-8004.2648.1 0.67 -1.0
2,543,840 - Xcc-8004.2648.1 0.67 -0.3
2,543,840 - Xcc-8004.2648.1 0.67 +0.3
2,543,840 - Xcc-8004.2648.1 0.67 -0.8
2,543,840 - Xcc-8004.2648.1 0.67 -1.0
2,543,840 - Xcc-8004.2648.1 0.67 +0.1
2,543,840 - Xcc-8004.2648.1 0.67 -0.2
2,543,844 + Xcc-8004.2648.1 0.68 -0.4
2,543,952 + Xcc-8004.2648.1 0.88 +0.6
2,543,952 + Xcc-8004.2648.1 0.88 -0.6
2,543,952 + Xcc-8004.2648.1 0.88 +0.6
2,543,952 + Xcc-8004.2648.1 0.88 +0.2
2,543,953 - Xcc-8004.2648.1 0.88 -1.3
2,543,953 - Xcc-8004.2648.1 0.88 +1.6
2,543,953 - Xcc-8004.2648.1 0.88 -0.5
2,543,953 - Xcc-8004.2648.1 0.88 +1.0
2,543,953 - Xcc-8004.2648.1 0.88 -1.1
2,543,953 - Xcc-8004.2648.1 0.88 +0.2
2,543,965 + -0.8
2,543,965 + +0.9
2,543,966 - +0.1
2,543,966 - -1.6
2,543,966 - +0.6
2,544,016 + +0.8
2,544,016 + +1.4
2,544,016 + +0.3
2,544,016 + -1.2
2,544,016 + +0.4
2,544,017 - -0.8
2,544,017 - -0.0

Or see this region's nucleotide sequence