Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2630.1 and Xcc-8004.2632.1 are separated by 10 nucleotides Xcc-8004.2632.1 and Xcc-8004.2633.1 are separated by 1 nucleotides
Xcc-8004.2630.1: Xcc-8004.2630.1 - Adsorption protein, at 2,533,949 to 2,535,001
Xcc-8004.2630.1
Xcc-8004.2632.1: Xcc-8004.2632.1 - Minor coat protein, at 2,535,012 to 2,535,332
Xcc-8004.2632.1
Xcc-8004.2633.1: Xcc-8004.2633.1 - Zona occludens toxin, at 2,535,334 to 2,536,656
Xcc-8004.2633.1
Position (kb) 2535
2536 Strain fitness (log2 ratio) -2
-1
0
1 at 2534.015 kb on - strand at 2534.015 kb on - strand at 2534.015 kb on - strand at 2534.068 kb on + strand, within Xcc-8004.2630.1 at 2534.196 kb on - strand, within Xcc-8004.2630.1 at 2534.196 kb on - strand, within Xcc-8004.2630.1 at 2534.222 kb on + strand, within Xcc-8004.2630.1 at 2534.256 kb on - strand, within Xcc-8004.2630.1 at 2534.269 kb on + strand, within Xcc-8004.2630.1 at 2534.270 kb on - strand, within Xcc-8004.2630.1 at 2534.352 kb on - strand, within Xcc-8004.2630.1 at 2534.352 kb on - strand, within Xcc-8004.2630.1 at 2534.354 kb on + strand, within Xcc-8004.2630.1 at 2534.354 kb on + strand, within Xcc-8004.2630.1 at 2534.360 kb on + strand, within Xcc-8004.2630.1 at 2534.361 kb on - strand, within Xcc-8004.2630.1 at 2534.361 kb on - strand, within Xcc-8004.2630.1 at 2534.390 kb on + strand, within Xcc-8004.2630.1 at 2534.390 kb on + strand, within Xcc-8004.2630.1 at 2534.396 kb on + strand, within Xcc-8004.2630.1 at 2534.396 kb on + strand, within Xcc-8004.2630.1 at 2534.397 kb on - strand, within Xcc-8004.2630.1 at 2534.397 kb on - strand, within Xcc-8004.2630.1 at 2534.397 kb on - strand, within Xcc-8004.2630.1 at 2534.397 kb on - strand, within Xcc-8004.2630.1 at 2534.397 kb on - strand, within Xcc-8004.2630.1 at 2534.832 kb on + strand, within Xcc-8004.2630.1 at 2534.833 kb on - strand, within Xcc-8004.2630.1 at 2534.972 kb on + strand at 2535.011 kb on + strand at 2535.144 kb on + strand, within Xcc-8004.2632.1 at 2535.144 kb on + strand, within Xcc-8004.2632.1 at 2535.244 kb on + strand, within Xcc-8004.2632.1 at 2535.244 kb on + strand, within Xcc-8004.2632.1 at 2535.244 kb on + strand, within Xcc-8004.2632.1 at 2535.244 kb on + strand, within Xcc-8004.2632.1 at 2535.579 kb on + strand, within Xcc-8004.2633.1 at 2535.830 kb on - strand, within Xcc-8004.2633.1 at 2535.886 kb on + strand, within Xcc-8004.2633.1 at 2535.910 kb on + strand, within Xcc-8004.2633.1 at 2535.911 kb on - strand, within Xcc-8004.2633.1 at 2535.911 kb on - strand, within Xcc-8004.2633.1 at 2535.920 kb on - strand, within Xcc-8004.2633.1 at 2535.920 kb on - strand, within Xcc-8004.2633.1 at 2535.963 kb on + strand, within Xcc-8004.2633.1 at 2536.030 kb on + strand, within Xcc-8004.2633.1 at 2536.031 kb on - strand, within Xcc-8004.2633.1 at 2536.046 kb on - strand, within Xcc-8004.2633.1 at 2536.046 kb on - strand, within Xcc-8004.2633.1 at 2536.046 kb on - strand, within Xcc-8004.2633.1 at 2536.080 kb on + strand, within Xcc-8004.2633.1 at 2536.080 kb on + strand, within Xcc-8004.2633.1 at 2536.080 kb on + strand, within Xcc-8004.2633.1 at 2536.081 kb on - strand, within Xcc-8004.2633.1 at 2536.207 kb on + strand, within Xcc-8004.2633.1 at 2536.207 kb on + strand, within Xcc-8004.2633.1 at 2536.208 kb on - strand, within Xcc-8004.2633.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 2,534,015 - +0.2 2,534,015 - +0.1 2,534,015 - -1.1 2,534,068 + Xcc-8004.2630.1 0.11 +0.3 2,534,196 - Xcc-8004.2630.1 0.23 -0.8 2,534,196 - Xcc-8004.2630.1 0.23 -1.9 2,534,222 + Xcc-8004.2630.1 0.26 -0.6 2,534,256 - Xcc-8004.2630.1 0.29 +0.1 2,534,269 + Xcc-8004.2630.1 0.30 +0.1 2,534,270 - Xcc-8004.2630.1 0.30 -1.4 2,534,352 - Xcc-8004.2630.1 0.38 -0.5 2,534,352 - Xcc-8004.2630.1 0.38 +0.5 2,534,354 + Xcc-8004.2630.1 0.38 -0.6 2,534,354 + Xcc-8004.2630.1 0.38 -0.4 2,534,360 + Xcc-8004.2630.1 0.39 +1.1 2,534,361 - Xcc-8004.2630.1 0.39 -0.4 2,534,361 - Xcc-8004.2630.1 0.39 -0.4 2,534,390 + Xcc-8004.2630.1 0.42 +0.1 2,534,390 + Xcc-8004.2630.1 0.42 -0.1 2,534,396 + Xcc-8004.2630.1 0.42 -0.5 2,534,396 + Xcc-8004.2630.1 0.42 +0.3 2,534,397 - Xcc-8004.2630.1 0.43 -1.4 2,534,397 - Xcc-8004.2630.1 0.43 -0.5 2,534,397 - Xcc-8004.2630.1 0.43 +0.5 2,534,397 - Xcc-8004.2630.1 0.43 -1.2 2,534,397 - Xcc-8004.2630.1 0.43 -0.3 2,534,832 + Xcc-8004.2630.1 0.84 -0.2 2,534,833 - Xcc-8004.2630.1 0.84 +1.0 2,534,972 + +0.3 2,535,011 + -0.1 2,535,144 + Xcc-8004.2632.1 0.41 -0.2 2,535,144 + Xcc-8004.2632.1 0.41 -0.9 2,535,244 + Xcc-8004.2632.1 0.72 +0.5 2,535,244 + Xcc-8004.2632.1 0.72 +0.3 2,535,244 + Xcc-8004.2632.1 0.72 -1.3 2,535,244 + Xcc-8004.2632.1 0.72 -1.2 2,535,579 + Xcc-8004.2633.1 0.19 +0.3 2,535,830 - Xcc-8004.2633.1 0.37 +0.8 2,535,886 + Xcc-8004.2633.1 0.42 -0.7 2,535,910 + Xcc-8004.2633.1 0.44 -0.1 2,535,911 - Xcc-8004.2633.1 0.44 +0.1 2,535,911 - Xcc-8004.2633.1 0.44 -0.1 2,535,920 - Xcc-8004.2633.1 0.44 +1.3 2,535,920 - Xcc-8004.2633.1 0.44 -2.0 2,535,963 + Xcc-8004.2633.1 0.48 -0.6 2,536,030 + Xcc-8004.2633.1 0.53 -1.1 2,536,031 - Xcc-8004.2633.1 0.53 -0.5 2,536,046 - Xcc-8004.2633.1 0.54 +0.7 2,536,046 - Xcc-8004.2633.1 0.54 -0.5 2,536,046 - Xcc-8004.2633.1 0.54 +0.8 2,536,080 + Xcc-8004.2633.1 0.56 +0.4 2,536,080 + Xcc-8004.2633.1 0.56 +0.8 2,536,080 + Xcc-8004.2633.1 0.56 +0.4 2,536,081 - Xcc-8004.2633.1 0.56 -0.1 2,536,207 + Xcc-8004.2633.1 0.66 +1.5 2,536,207 + Xcc-8004.2633.1 0.66 +1.2 2,536,208 - Xcc-8004.2633.1 0.66 -0.6
Or see this region's nucleotide sequence