Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2334.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2333.1 and Xcc-8004.2334.1 are separated by 69 nucleotidesXcc-8004.2334.1 and Xcc-8004.2335.1 overlap by 4 nucleotides Xcc-8004.2333.1: Xcc-8004.2333.1 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 2,279,904 to 2,281,496 Xcc-8004.2333.1 Xcc-8004.2334.1: Xcc-8004.2334.1 - Transport ATP-binding protein CydD, at 2,281,566 to 2,283,389 Xcc-8004.2334.1 Xcc-8004.2335.1: Xcc-8004.2335.1 - Transport ATP-binding protein CydC, at 2,283,386 to 2,285,062 Xcc-8004.2335.1 Position (kb) 2281 2282 2283 2284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2280.622 kb on + strand, within Xcc-8004.2333.1at 2280.623 kb on - strand, within Xcc-8004.2333.1at 2280.641 kb on - strand, within Xcc-8004.2333.1at 2280.763 kb on + strand, within Xcc-8004.2333.1at 2280.764 kb on - strand, within Xcc-8004.2333.1at 2280.764 kb on - strand, within Xcc-8004.2333.1at 2280.916 kb on + strand, within Xcc-8004.2333.1at 2280.916 kb on + strand, within Xcc-8004.2333.1at 2280.917 kb on - strand, within Xcc-8004.2333.1at 2280.917 kb on - strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.231 kb on + strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.232 kb on - strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.240 kb on + strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.241 kb on - strand, within Xcc-8004.2333.1at 2281.243 kb on + strand, within Xcc-8004.2333.1at 2281.244 kb on - strand, within Xcc-8004.2333.1at 2281.244 kb on - strand, within Xcc-8004.2333.1at 2281.372 kb on + strandat 2281.372 kb on + strandat 2281.372 kb on + strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.373 kb on - strandat 2281.438 kb on + strandat 2281.439 kb on - strandat 2281.439 kb on - strandat 2281.439 kb on - strandat 2281.525 kb on - strandat 2281.636 kb on + strandat 2281.636 kb on + strandat 2281.637 kb on - strandat 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.106 kb on + strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.107 kb on - strand, within Xcc-8004.2334.1at 2282.119 kb on - strand, within Xcc-8004.2334.1at 2282.352 kb on + strand, within Xcc-8004.2334.1at 2282.352 kb on + strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.353 kb on - strand, within Xcc-8004.2334.1at 2282.381 kb on + strand, within Xcc-8004.2334.1at 2282.382 kb on - strand, within Xcc-8004.2334.1at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.499 kb on + strand, within Xcc-8004.2334.1at 2282.514 kb on + strand, within Xcc-8004.2334.1at 2282.514 kb on + strand, within Xcc-8004.2334.1at 2282.515 kb on - strand, within Xcc-8004.2334.1at 2282.515 kb on - strand, within Xcc-8004.2334.1at 2282.622 kb on + strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.623 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.968 kb on - strand, within Xcc-8004.2334.1at 2282.986 kb on - strand, within Xcc-8004.2334.1at 2283.355 kb on + strandat 2283.356 kb on - strandat 2283.356 kb on - strandat 2283.424 kb on + strandat 2283.425 kb on - strandat 2283.626 kb on + strand, within Xcc-8004.2335.1at 2283.825 kb on + strand, within Xcc-8004.2335.1at 2283.825 kb on + strand, within Xcc-8004.2335.1at 2283.826 kb on - strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.869 kb on + strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1at 2283.870 kb on - strand, within Xcc-8004.2335.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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2,280,622 + Xcc-8004.2333.1 0.45 -2.0
2,280,623 - Xcc-8004.2333.1 0.45 -2.8
2,280,641 - Xcc-8004.2333.1 0.46 -0.8
2,280,763 + Xcc-8004.2333.1 0.54 +0.6
2,280,764 - Xcc-8004.2333.1 0.54 -0.8
2,280,764 - Xcc-8004.2333.1 0.54 +0.1
2,280,916 + Xcc-8004.2333.1 0.64 -0.2
2,280,916 + Xcc-8004.2333.1 0.64 +0.1
2,280,917 - Xcc-8004.2333.1 0.64 +0.1
2,280,917 - Xcc-8004.2333.1 0.64 +0.5
2,281,231 + Xcc-8004.2333.1 0.83 -3.1
2,281,231 + Xcc-8004.2333.1 0.83 -1.8
2,281,231 + Xcc-8004.2333.1 0.83 -1.8
2,281,231 + Xcc-8004.2333.1 0.83 -0.2
2,281,231 + Xcc-8004.2333.1 0.83 -2.2
2,281,232 - Xcc-8004.2333.1 0.83 -2.4
2,281,232 - Xcc-8004.2333.1 0.83 -0.9
2,281,232 - Xcc-8004.2333.1 0.83 -2.0
2,281,240 + Xcc-8004.2333.1 0.84 -2.4
2,281,240 + Xcc-8004.2333.1 0.84 -0.5
2,281,240 + Xcc-8004.2333.1 0.84 -2.5
2,281,240 + Xcc-8004.2333.1 0.84 -1.5
2,281,240 + Xcc-8004.2333.1 0.84 +0.1
2,281,240 + Xcc-8004.2333.1 0.84 -1.5
2,281,240 + Xcc-8004.2333.1 0.84 -0.2
2,281,240 + Xcc-8004.2333.1 0.84 -0.6
2,281,240 + Xcc-8004.2333.1 0.84 -0.2
2,281,241 - Xcc-8004.2333.1 0.84 -2.8
2,281,241 - Xcc-8004.2333.1 0.84 -1.2
2,281,241 - Xcc-8004.2333.1 0.84 -0.8
2,281,241 - Xcc-8004.2333.1 0.84 -1.9
2,281,241 - Xcc-8004.2333.1 0.84 +0.8
2,281,241 - Xcc-8004.2333.1 0.84 -2.4
2,281,243 + Xcc-8004.2333.1 0.84 -1.4
2,281,244 - Xcc-8004.2333.1 0.84 -0.4
2,281,244 - Xcc-8004.2333.1 0.84 -1.8
2,281,372 + -1.5
2,281,372 + -2.4
2,281,372 + -0.2
2,281,373 - -1.4
2,281,373 - -2.0
2,281,373 - -0.9
2,281,373 - -1.7
2,281,373 - -0.6
2,281,373 - -2.0
2,281,438 + +0.8
2,281,439 - -2.1
2,281,439 - -2.0
2,281,439 - -0.4
2,281,525 - +0.6
2,281,636 + -0.5
2,281,636 + +0.2
2,281,637 - +0.3
2,282,106 + Xcc-8004.2334.1 0.30 -1.0
2,282,106 + Xcc-8004.2334.1 0.30 +0.8
2,282,106 + Xcc-8004.2334.1 0.30 -1.8
2,282,106 + Xcc-8004.2334.1 0.30 -0.5
2,282,107 - Xcc-8004.2334.1 0.30 +0.1
2,282,107 - Xcc-8004.2334.1 0.30 -1.8
2,282,107 - Xcc-8004.2334.1 0.30 -2.4
2,282,119 - Xcc-8004.2334.1 0.30 -1.4
2,282,352 + Xcc-8004.2334.1 0.43 -0.2
2,282,352 + Xcc-8004.2334.1 0.43 -0.5
2,282,353 - Xcc-8004.2334.1 0.43 -1.5
2,282,353 - Xcc-8004.2334.1 0.43 -0.2
2,282,353 - Xcc-8004.2334.1 0.43 -1.2
2,282,381 + Xcc-8004.2334.1 0.45 -1.7
2,282,382 - Xcc-8004.2334.1 0.45 -2.2
2,282,499 + Xcc-8004.2334.1 0.51 -0.2
2,282,499 + Xcc-8004.2334.1 0.51 -3.3
2,282,499 + Xcc-8004.2334.1 0.51 -1.2
2,282,514 + Xcc-8004.2334.1 0.52 -1.4
2,282,514 + Xcc-8004.2334.1 0.52 -1.2
2,282,515 - Xcc-8004.2334.1 0.52 -2.2
2,282,515 - Xcc-8004.2334.1 0.52 -0.1
2,282,622 + Xcc-8004.2334.1 0.58 +0.8
2,282,623 - Xcc-8004.2334.1 0.58 +0.1
2,282,623 - Xcc-8004.2334.1 0.58 -1.2
2,282,623 - Xcc-8004.2334.1 0.58 -1.5
2,282,623 - Xcc-8004.2334.1 0.58 +0.2
2,282,968 - Xcc-8004.2334.1 0.77 -2.4
2,282,968 - Xcc-8004.2334.1 0.77 -1.8
2,282,968 - Xcc-8004.2334.1 0.77 +0.2
2,282,986 - Xcc-8004.2334.1 0.78 -0.2
2,283,355 + +1.8
2,283,356 - +2.0
2,283,356 - -1.2
2,283,424 + +1.4
2,283,425 - -0.8
2,283,626 + Xcc-8004.2335.1 0.14 -0.8
2,283,825 + Xcc-8004.2335.1 0.26 -1.7
2,283,825 + Xcc-8004.2335.1 0.26 -2.4
2,283,826 - Xcc-8004.2335.1 0.26 -0.8
2,283,869 + Xcc-8004.2335.1 0.29 -1.4
2,283,869 + Xcc-8004.2335.1 0.29 -2.8
2,283,869 + Xcc-8004.2335.1 0.29 -1.2
2,283,870 - Xcc-8004.2335.1 0.29 -1.8
2,283,870 - Xcc-8004.2335.1 0.29 -1.3
2,283,870 - Xcc-8004.2335.1 0.29 -2.7
2,283,870 - Xcc-8004.2335.1 0.29 -1.2
2,283,870 - Xcc-8004.2335.1 0.29 -2.0
2,283,870 - Xcc-8004.2335.1 0.29 -1.5

Or see this region's nucleotide sequence