Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1943.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1942.1 and Xcc-8004.1943.1 are separated by 33 nucleotidesXcc-8004.1943.1 and Xcc-8004.1944.1 overlap by 8 nucleotides Xcc-8004.1942.1: Xcc-8004.1942.1 - putative membrane protein, at 1,872,214 to 1,873,677 Xcc-8004.1942.1 Xcc-8004.1943.1: Xcc-8004.1943.1 - FIG01211831: hypothetical protein, at 1,873,711 to 1,874,151 Xcc-8004.1943.1 Xcc-8004.1944.1: Xcc-8004.1944.1 - FIG01211388: hypothetical protein, at 1,874,144 to 1,874,980 Xcc-8004.1944.1 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1872.785 kb on + strand, within Xcc-8004.1942.1at 1872.785 kb on + strand, within Xcc-8004.1942.1at 1872.785 kb on + strand, within Xcc-8004.1942.1at 1872.785 kb on + strand, within Xcc-8004.1942.1at 1872.785 kb on + strand, within Xcc-8004.1942.1at 1872.786 kb on - strand, within Xcc-8004.1942.1at 1872.786 kb on - strand, within Xcc-8004.1942.1at 1872.787 kb on + strand, within Xcc-8004.1942.1at 1872.787 kb on + strand, within Xcc-8004.1942.1at 1872.787 kb on + strand, within Xcc-8004.1942.1at 1872.788 kb on - strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.958 kb on + strand, within Xcc-8004.1942.1at 1872.959 kb on - strand, within Xcc-8004.1942.1at 1872.959 kb on - strand, within Xcc-8004.1942.1at 1872.959 kb on - strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.012 kb on + strand, within Xcc-8004.1942.1at 1873.013 kb on - strand, within Xcc-8004.1942.1at 1873.013 kb on - strand, within Xcc-8004.1942.1at 1873.614 kb on - strandat 1873.648 kb on - strandat 1873.712 kb on + strandat 1873.713 kb on - strandat 1873.935 kb on - strand, within Xcc-8004.1943.1at 1873.988 kb on - strand, within Xcc-8004.1943.1at 1874.078 kb on + strand, within Xcc-8004.1943.1at 1874.079 kb on - strand, within Xcc-8004.1943.1at 1874.079 kb on - strand, within Xcc-8004.1943.1at 1874.138 kb on + strandat 1874.138 kb on + strandat 1874.314 kb on - strand, within Xcc-8004.1944.1at 1874.319 kb on + strand, within Xcc-8004.1944.1at 1874.320 kb on - strand, within Xcc-8004.1944.1at 1874.328 kb on + strand, within Xcc-8004.1944.1at 1874.328 kb on + strand, within Xcc-8004.1944.1at 1874.328 kb on + strand, within Xcc-8004.1944.1at 1874.329 kb on - strand, within Xcc-8004.1944.1at 1874.329 kb on - strand, within Xcc-8004.1944.1at 1874.409 kb on + strand, within Xcc-8004.1944.1at 1874.457 kb on + strand, within Xcc-8004.1944.1at 1874.457 kb on + strand, within Xcc-8004.1944.1at 1874.457 kb on + strand, within Xcc-8004.1944.1at 1874.457 kb on + strand, within Xcc-8004.1944.1at 1874.457 kb on + strand, within Xcc-8004.1944.1at 1874.458 kb on - strand, within Xcc-8004.1944.1at 1874.470 kb on - strand, within Xcc-8004.1944.1at 1874.498 kb on + strand, within Xcc-8004.1944.1at 1874.712 kb on + strand, within Xcc-8004.1944.1at 1874.713 kb on - strand, within Xcc-8004.1944.1at 1874.713 kb on - strand, within Xcc-8004.1944.1at 1874.772 kb on + strand, within Xcc-8004.1944.1at 1874.772 kb on + strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.872 kb on - strand, within Xcc-8004.1944.1at 1874.873 kb on + strand, within Xcc-8004.1944.1at 1874.873 kb on + strand, within Xcc-8004.1944.1at 1874.874 kb on - strand, within Xcc-8004.1944.1at 1874.874 kb on - strand, within Xcc-8004.1944.1at 1874.896 kb on - strand, within Xcc-8004.1944.1at 1874.896 kb on - strand, within Xcc-8004.1944.1at 1875.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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1,872,785 + Xcc-8004.1942.1 0.39 +0.4
1,872,785 + Xcc-8004.1942.1 0.39 +0.4
1,872,785 + Xcc-8004.1942.1 0.39 -0.2
1,872,785 + Xcc-8004.1942.1 0.39 +0.4
1,872,785 + Xcc-8004.1942.1 0.39 -1.3
1,872,786 - Xcc-8004.1942.1 0.39 -0.2
1,872,786 - Xcc-8004.1942.1 0.39 -3.0
1,872,787 + Xcc-8004.1942.1 0.39 +1.4
1,872,787 + Xcc-8004.1942.1 0.39 +0.5
1,872,787 + Xcc-8004.1942.1 0.39 -0.5
1,872,788 - Xcc-8004.1942.1 0.39 -0.8
1,872,958 + Xcc-8004.1942.1 0.51 -0.2
1,872,958 + Xcc-8004.1942.1 0.51 -0.6
1,872,958 + Xcc-8004.1942.1 0.51 +0.6
1,872,958 + Xcc-8004.1942.1 0.51 +0.1
1,872,958 + Xcc-8004.1942.1 0.51 +0.7
1,872,958 + Xcc-8004.1942.1 0.51 +2.5
1,872,958 + Xcc-8004.1942.1 0.51 -0.1
1,872,958 + Xcc-8004.1942.1 0.51 -0.2
1,872,958 + Xcc-8004.1942.1 0.51 +0.1
1,872,958 + Xcc-8004.1942.1 0.51 +0.6
1,872,959 - Xcc-8004.1942.1 0.51 +0.2
1,872,959 - Xcc-8004.1942.1 0.51 -1.2
1,872,959 - Xcc-8004.1942.1 0.51 -1.0
1,873,012 + Xcc-8004.1942.1 0.55 -1.0
1,873,012 + Xcc-8004.1942.1 0.55 -0.8
1,873,012 + Xcc-8004.1942.1 0.55 +1.9
1,873,012 + Xcc-8004.1942.1 0.55 -0.0
1,873,012 + Xcc-8004.1942.1 0.55 -0.4
1,873,012 + Xcc-8004.1942.1 0.55 -0.7
1,873,013 - Xcc-8004.1942.1 0.55 -0.8
1,873,013 - Xcc-8004.1942.1 0.55 -0.9
1,873,614 - +0.2
1,873,648 - -0.2
1,873,712 + +0.5
1,873,713 - -0.4
1,873,935 - Xcc-8004.1943.1 0.51 -1.7
1,873,988 - Xcc-8004.1943.1 0.63 -1.4
1,874,078 + Xcc-8004.1943.1 0.83 -0.3
1,874,079 - Xcc-8004.1943.1 0.83 +0.5
1,874,079 - Xcc-8004.1943.1 0.83 -0.8
1,874,138 + +0.4
1,874,138 + +1.0
1,874,314 - Xcc-8004.1944.1 0.20 -0.8
1,874,319 + Xcc-8004.1944.1 0.21 +1.0
1,874,320 - Xcc-8004.1944.1 0.21 -0.1
1,874,328 + Xcc-8004.1944.1 0.22 -0.5
1,874,328 + Xcc-8004.1944.1 0.22 -0.8
1,874,328 + Xcc-8004.1944.1 0.22 -0.7
1,874,329 - Xcc-8004.1944.1 0.22 -0.8
1,874,329 - Xcc-8004.1944.1 0.22 +0.1
1,874,409 + Xcc-8004.1944.1 0.32 +0.1
1,874,457 + Xcc-8004.1944.1 0.37 -1.3
1,874,457 + Xcc-8004.1944.1 0.37 +0.1
1,874,457 + Xcc-8004.1944.1 0.37 +1.4
1,874,457 + Xcc-8004.1944.1 0.37 +0.2
1,874,457 + Xcc-8004.1944.1 0.37 -0.5
1,874,458 - Xcc-8004.1944.1 0.38 -1.2
1,874,470 - Xcc-8004.1944.1 0.39 -1.5
1,874,498 + Xcc-8004.1944.1 0.42 -1.5
1,874,712 + Xcc-8004.1944.1 0.68 +0.8
1,874,713 - Xcc-8004.1944.1 0.68 +1.4
1,874,713 - Xcc-8004.1944.1 0.68 -1.6
1,874,772 + Xcc-8004.1944.1 0.75 +0.8
1,874,772 + Xcc-8004.1944.1 0.75 +1.1
1,874,773 - Xcc-8004.1944.1 0.75 -1.5
1,874,773 - Xcc-8004.1944.1 0.75 -0.0
1,874,773 - Xcc-8004.1944.1 0.75 +0.8
1,874,776 + Xcc-8004.1944.1 0.76 -0.0
1,874,776 + Xcc-8004.1944.1 0.76 -0.1
1,874,776 + Xcc-8004.1944.1 0.76 -1.7
1,874,776 + Xcc-8004.1944.1 0.76 -0.9
1,874,777 - Xcc-8004.1944.1 0.76 +0.5
1,874,777 - Xcc-8004.1944.1 0.76 +0.8
1,874,777 - Xcc-8004.1944.1 0.76 -0.2
1,874,777 - Xcc-8004.1944.1 0.76 -1.0
1,874,778 + Xcc-8004.1944.1 0.76 +0.8
1,874,778 + Xcc-8004.1944.1 0.76 -0.1
1,874,778 + Xcc-8004.1944.1 0.76 +0.9
1,874,778 + Xcc-8004.1944.1 0.76 -2.4
1,874,778 + Xcc-8004.1944.1 0.76 -0.6
1,874,778 + Xcc-8004.1944.1 0.76 +1.5
1,874,778 + Xcc-8004.1944.1 0.76 -0.7
1,874,778 + Xcc-8004.1944.1 0.76 -0.0
1,874,778 + Xcc-8004.1944.1 0.76 -0.2
1,874,778 + Xcc-8004.1944.1 0.76 -0.9
1,874,779 - Xcc-8004.1944.1 0.76 +0.2
1,874,779 - Xcc-8004.1944.1 0.76 -1.2
1,874,779 - Xcc-8004.1944.1 0.76 +1.9
1,874,779 - Xcc-8004.1944.1 0.76 +0.6
1,874,779 - Xcc-8004.1944.1 0.76 -0.8
1,874,779 - Xcc-8004.1944.1 0.76 -1.1
1,874,779 - Xcc-8004.1944.1 0.76 +0.8
1,874,779 - Xcc-8004.1944.1 0.76 +1.1
1,874,779 - Xcc-8004.1944.1 0.76 +1.0
1,874,871 + Xcc-8004.1944.1 0.87 -0.5
1,874,871 + Xcc-8004.1944.1 0.87 +1.8
1,874,871 + Xcc-8004.1944.1 0.87 -0.2
1,874,872 - Xcc-8004.1944.1 0.87 -0.4
1,874,873 + Xcc-8004.1944.1 0.87 +1.4
1,874,873 + Xcc-8004.1944.1 0.87 +0.5
1,874,874 - Xcc-8004.1944.1 0.87 -0.1
1,874,874 - Xcc-8004.1944.1 0.87 +0.4
1,874,896 - Xcc-8004.1944.1 0.90 -0.0
1,874,896 - Xcc-8004.1944.1 0.90 +0.1
1,875,119 + +1.0

Or see this region's nucleotide sequence