Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1918.1 and Xcc-8004.1919.1 are separated by 41 nucleotides Xcc-8004.1919.1 and Xcc-8004.1920.1 are separated by 202 nucleotides Xcc-8004.1920.1 and Xcc-8004.1921.1 are separated by 184 nucleotides
Xcc-8004.1918.1: Xcc-8004.1918.1 - methylated-DNA-protein-cysteine S-methyltransferase related protein, at 1,848,691 to 1,849,284
Xcc-8004.1918.1
Xcc-8004.1919.1: Xcc-8004.1919.1 - FIG056164: rhomboid family serine protease, at 1,849,326 to 1,850,012
Xcc-8004.1919.1
Xcc-8004.1920.1: Xcc-8004.1920.1 - Metallopeptidase, at 1,850,215 to 1,852,227
Xcc-8004.1920.1
Xcc-8004.1921.1: Xcc-8004.1921.1 - Metallopeptidase, at 1,852,412 to 1,854,628
Xcc-8004.1921.1
Position (kb) 1850
1851
1852
1853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1849.283 kb on - strand at 1849.283 kb on - strand at 1849.283 kb on - strand at 1849.530 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.638 kb on + strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.639 kb on - strand, within Xcc-8004.1919.1 at 1849.641 kb on + strand, within Xcc-8004.1919.1 at 1849.641 kb on + strand, within Xcc-8004.1919.1 at 1849.641 kb on + strand, within Xcc-8004.1919.1 at 1849.641 kb on + strand, within Xcc-8004.1919.1 at 1849.642 kb on - strand, within Xcc-8004.1919.1 at 1849.642 kb on - strand, within Xcc-8004.1919.1 at 1849.642 kb on - strand, within Xcc-8004.1919.1 at 1849.642 kb on - strand, within Xcc-8004.1919.1 at 1850.042 kb on + strand at 1850.043 kb on - strand at 1850.105 kb on + strand at 1850.105 kb on + strand at 1850.106 kb on - strand at 1850.190 kb on - strand at 1850.211 kb on + strand at 1850.212 kb on - strand at 1850.564 kb on + strand, within Xcc-8004.1920.1 at 1850.564 kb on + strand, within Xcc-8004.1920.1 at 1850.564 kb on + strand, within Xcc-8004.1920.1 at 1850.564 kb on + strand, within Xcc-8004.1920.1 at 1850.565 kb on - strand, within Xcc-8004.1920.1 at 1850.565 kb on - strand, within Xcc-8004.1920.1 at 1850.574 kb on - strand, within Xcc-8004.1920.1 at 1850.574 kb on - strand, within Xcc-8004.1920.1 at 1850.574 kb on - strand, within Xcc-8004.1920.1 at 1850.584 kb on + strand, within Xcc-8004.1920.1 at 1850.584 kb on + strand, within Xcc-8004.1920.1 at 1850.585 kb on - strand, within Xcc-8004.1920.1 at 1850.585 kb on - strand, within Xcc-8004.1920.1 at 1850.718 kb on - strand, within Xcc-8004.1920.1 at 1850.726 kb on + strand, within Xcc-8004.1920.1 at 1850.726 kb on + strand, within Xcc-8004.1920.1 at 1850.726 kb on + strand, within Xcc-8004.1920.1 at 1850.727 kb on - strand, within Xcc-8004.1920.1 at 1850.727 kb on - strand, within Xcc-8004.1920.1 at 1850.727 kb on - strand, within Xcc-8004.1920.1 at 1850.813 kb on + strand, within Xcc-8004.1920.1 at 1850.813 kb on + strand, within Xcc-8004.1920.1 at 1850.813 kb on + strand, within Xcc-8004.1920.1 at 1850.960 kb on + strand, within Xcc-8004.1920.1 at 1850.960 kb on + strand, within Xcc-8004.1920.1 at 1850.960 kb on + strand, within Xcc-8004.1920.1 at 1850.961 kb on - strand, within Xcc-8004.1920.1 at 1850.961 kb on - strand, within Xcc-8004.1920.1 at 1851.146 kb on + strand, within Xcc-8004.1920.1 at 1851.146 kb on + strand, within Xcc-8004.1920.1 at 1851.146 kb on + strand, within Xcc-8004.1920.1 at 1851.147 kb on - strand, within Xcc-8004.1920.1 at 1851.147 kb on - strand, within Xcc-8004.1920.1 at 1851.254 kb on + strand, within Xcc-8004.1920.1 at 1851.320 kb on + strand, within Xcc-8004.1920.1 at 1851.320 kb on + strand, within Xcc-8004.1920.1 at 1851.321 kb on - strand, within Xcc-8004.1920.1 at 1851.321 kb on - strand, within Xcc-8004.1920.1 at 1851.321 kb on - strand, within Xcc-8004.1920.1 at 1851.321 kb on - strand, within Xcc-8004.1920.1 at 1851.455 kb on + strand, within Xcc-8004.1920.1 at 1851.455 kb on + strand, within Xcc-8004.1920.1 at 1851.455 kb on + strand, within Xcc-8004.1920.1 at 1851.456 kb on - strand, within Xcc-8004.1920.1 at 1851.456 kb on - strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.491 kb on + strand, within Xcc-8004.1920.1 at 1851.492 kb on - strand, within Xcc-8004.1920.1 at 1851.492 kb on - strand, within Xcc-8004.1920.1 at 1851.559 kb on + strand, within Xcc-8004.1920.1 at 1851.559 kb on + strand, within Xcc-8004.1920.1 at 1851.629 kb on + strand, within Xcc-8004.1920.1 at 1851.629 kb on + strand, within Xcc-8004.1920.1 at 1851.680 kb on + strand, within Xcc-8004.1920.1 at 1851.680 kb on + strand, within Xcc-8004.1920.1 at 1851.680 kb on + strand, within Xcc-8004.1920.1 at 1851.680 kb on + strand, within Xcc-8004.1920.1 at 1851.681 kb on - strand, within Xcc-8004.1920.1 at 1851.681 kb on - strand, within Xcc-8004.1920.1 at 1851.681 kb on - strand, within Xcc-8004.1920.1 at 1851.722 kb on + strand, within Xcc-8004.1920.1 at 1851.722 kb on + strand, within Xcc-8004.1920.1 at 1851.723 kb on - strand, within Xcc-8004.1920.1 at 1851.723 kb on - strand, within Xcc-8004.1920.1 at 1852.082 kb on + strand at 1852.082 kb on + strand at 1852.082 kb on + strand at 1852.083 kb on - strand at 1852.083 kb on - strand at 1852.088 kb on + strand at 1852.088 kb on + strand at 1852.088 kb on + strand at 1852.265 kb on + strand at 1852.266 kb on - strand at 1852.266 kb on - strand at 1852.413 kb on + strand at 1852.413 kb on + strand at 1852.413 kb on + strand at 1852.413 kb on + strand at 1852.414 kb on - strand at 1852.521 kb on - strand at 1852.521 kb on - strand at 1852.554 kb on + strand at 1852.554 kb on + strand at 1852.555 kb on - strand at 1852.633 kb on - strand at 1852.692 kb on + strand, within Xcc-8004.1921.1 at 1852.693 kb on - strand, within Xcc-8004.1921.1 at 1852.693 kb on - strand, within Xcc-8004.1921.1 at 1852.785 kb on + strand, within Xcc-8004.1921.1 at 1852.785 kb on + strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.786 kb on - strand, within Xcc-8004.1921.1 at 1852.947 kb on + strand, within Xcc-8004.1921.1 at 1852.948 kb on - strand, within Xcc-8004.1921.1 at 1852.948 kb on - strand, within Xcc-8004.1921.1 at 1852.980 kb on + strand, within Xcc-8004.1921.1 at 1852.980 kb on + strand, within Xcc-8004.1921.1 at 1853.034 kb on + strand, within Xcc-8004.1921.1 at 1853.034 kb on + strand, within Xcc-8004.1921.1 at 1853.034 kb on + strand, within Xcc-8004.1921.1 at 1853.035 kb on - strand, within Xcc-8004.1921.1 at 1853.035 kb on - strand, within Xcc-8004.1921.1 at 1853.037 kb on + strand, within Xcc-8004.1921.1 at 1853.037 kb on + strand, within Xcc-8004.1921.1 at 1853.037 kb on + strand, within Xcc-8004.1921.1 at 1853.038 kb on - strand, within Xcc-8004.1921.1 at 1853.110 kb on - strand, within Xcc-8004.1921.1 at 1853.110 kb on - strand, within Xcc-8004.1921.1 at 1853.151 kb on + strand, within Xcc-8004.1921.1 at 1853.151 kb on + strand, within Xcc-8004.1921.1 at 1853.151 kb on + strand, within Xcc-8004.1921.1 at 1853.152 kb on - strand, within Xcc-8004.1921.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,849,283 - -0.6 1,849,283 - +1.0 1,849,283 - +0.8 1,849,530 + Xcc-8004.1919.1 0.30 -2.0 1,849,638 + Xcc-8004.1919.1 0.45 -0.4 1,849,638 + Xcc-8004.1919.1 0.45 -0.0 1,849,638 + Xcc-8004.1919.1 0.45 -0.7 1,849,638 + Xcc-8004.1919.1 0.45 -0.3 1,849,638 + Xcc-8004.1919.1 0.45 -0.8 1,849,638 + Xcc-8004.1919.1 0.45 -0.2 1,849,639 - Xcc-8004.1919.1 0.46 +0.6 1,849,639 - Xcc-8004.1919.1 0.46 -0.8 1,849,639 - Xcc-8004.1919.1 0.46 -0.9 1,849,639 - Xcc-8004.1919.1 0.46 +0.3 1,849,639 - Xcc-8004.1919.1 0.46 +0.2 1,849,639 - Xcc-8004.1919.1 0.46 +0.8 1,849,639 - Xcc-8004.1919.1 0.46 -0.8 1,849,639 - Xcc-8004.1919.1 0.46 -0.0 1,849,641 + Xcc-8004.1919.1 0.46 -1.0 1,849,641 + Xcc-8004.1919.1 0.46 -0.8 1,849,641 + Xcc-8004.1919.1 0.46 -1.5 1,849,641 + Xcc-8004.1919.1 0.46 +0.6 1,849,642 - Xcc-8004.1919.1 0.46 -0.9 1,849,642 - Xcc-8004.1919.1 0.46 -0.5 1,849,642 - Xcc-8004.1919.1 0.46 -3.5 1,849,642 - Xcc-8004.1919.1 0.46 +1.9 1,850,042 + +0.4 1,850,043 - +0.2 1,850,105 + +0.4 1,850,105 + -0.4 1,850,106 - -1.5 1,850,190 - +0.1 1,850,211 + +0.2 1,850,212 - -0.4 1,850,564 + Xcc-8004.1920.1 0.17 -1.0 1,850,564 + Xcc-8004.1920.1 0.17 -1.3 1,850,564 + Xcc-8004.1920.1 0.17 +0.3 1,850,564 + Xcc-8004.1920.1 0.17 +0.1 1,850,565 - Xcc-8004.1920.1 0.17 -0.9 1,850,565 - Xcc-8004.1920.1 0.17 +0.5 1,850,574 - Xcc-8004.1920.1 0.18 -0.8 1,850,574 - Xcc-8004.1920.1 0.18 -0.7 1,850,574 - Xcc-8004.1920.1 0.18 +1.7 1,850,584 + Xcc-8004.1920.1 0.18 -0.9 1,850,584 + Xcc-8004.1920.1 0.18 -0.6 1,850,585 - Xcc-8004.1920.1 0.18 -0.4 1,850,585 - Xcc-8004.1920.1 0.18 -0.2 1,850,718 - Xcc-8004.1920.1 0.25 -0.8 1,850,726 + Xcc-8004.1920.1 0.25 -1.5 1,850,726 + Xcc-8004.1920.1 0.25 -0.8 1,850,726 + Xcc-8004.1920.1 0.25 -0.2 1,850,727 - Xcc-8004.1920.1 0.25 +1.5 1,850,727 - Xcc-8004.1920.1 0.25 -0.3 1,850,727 - Xcc-8004.1920.1 0.25 -2.5 1,850,813 + Xcc-8004.1920.1 0.30 +0.3 1,850,813 + Xcc-8004.1920.1 0.30 +0.1 1,850,813 + Xcc-8004.1920.1 0.30 -3.0 1,850,960 + Xcc-8004.1920.1 0.37 -1.1 1,850,960 + Xcc-8004.1920.1 0.37 -0.9 1,850,960 + Xcc-8004.1920.1 0.37 -0.0 1,850,961 - Xcc-8004.1920.1 0.37 -0.4 1,850,961 - Xcc-8004.1920.1 0.37 -1.5 1,851,146 + Xcc-8004.1920.1 0.46 -1.8 1,851,146 + Xcc-8004.1920.1 0.46 -0.7 1,851,146 + Xcc-8004.1920.1 0.46 -0.2 1,851,147 - Xcc-8004.1920.1 0.46 -1.9 1,851,147 - Xcc-8004.1920.1 0.46 -0.9 1,851,254 + Xcc-8004.1920.1 0.52 -0.2 1,851,320 + Xcc-8004.1920.1 0.55 -1.7 1,851,320 + Xcc-8004.1920.1 0.55 -1.5 1,851,321 - Xcc-8004.1920.1 0.55 -0.3 1,851,321 - Xcc-8004.1920.1 0.55 -0.5 1,851,321 - Xcc-8004.1920.1 0.55 +0.5 1,851,321 - Xcc-8004.1920.1 0.55 -0.8 1,851,455 + Xcc-8004.1920.1 0.62 -0.7 1,851,455 + Xcc-8004.1920.1 0.62 -0.8 1,851,455 + Xcc-8004.1920.1 0.62 +0.2 1,851,456 - Xcc-8004.1920.1 0.62 -1.3 1,851,456 - Xcc-8004.1920.1 0.62 -0.5 1,851,491 + Xcc-8004.1920.1 0.63 -0.8 1,851,491 + Xcc-8004.1920.1 0.63 +0.5 1,851,491 + Xcc-8004.1920.1 0.63 -0.8 1,851,491 + Xcc-8004.1920.1 0.63 -2.1 1,851,491 + Xcc-8004.1920.1 0.63 -2.5 1,851,491 + Xcc-8004.1920.1 0.63 -0.8 1,851,491 + Xcc-8004.1920.1 0.63 -0.2 1,851,492 - Xcc-8004.1920.1 0.63 -0.0 1,851,492 - Xcc-8004.1920.1 0.63 -1.2 1,851,559 + Xcc-8004.1920.1 0.67 +0.0 1,851,559 + Xcc-8004.1920.1 0.67 -0.9 1,851,629 + Xcc-8004.1920.1 0.70 -1.5 1,851,629 + Xcc-8004.1920.1 0.70 -1.8 1,851,680 + Xcc-8004.1920.1 0.73 -0.3 1,851,680 + Xcc-8004.1920.1 0.73 -0.6 1,851,680 + Xcc-8004.1920.1 0.73 -0.9 1,851,680 + Xcc-8004.1920.1 0.73 +0.2 1,851,681 - Xcc-8004.1920.1 0.73 -2.2 1,851,681 - Xcc-8004.1920.1 0.73 -0.0 1,851,681 - Xcc-8004.1920.1 0.73 +0.8 1,851,722 + Xcc-8004.1920.1 0.75 -1.7 1,851,722 + Xcc-8004.1920.1 0.75 -0.0 1,851,723 - Xcc-8004.1920.1 0.75 -0.1 1,851,723 - Xcc-8004.1920.1 0.75 -1.8 1,852,082 + +0.3 1,852,082 + +0.1 1,852,082 + -1.4 1,852,083 - +0.6 1,852,083 - +0.2 1,852,088 + -0.6 1,852,088 + -1.6 1,852,088 + -0.5 1,852,265 + -1.1 1,852,266 - -0.2 1,852,266 - -0.0 1,852,413 + -0.2 1,852,413 + +0.0 1,852,413 + +0.2 1,852,413 + -0.8 1,852,414 - +0.5 1,852,521 - -0.3 1,852,521 - +1.5 1,852,554 + -1.8 1,852,554 + +0.5 1,852,555 - -1.0 1,852,633 - +0.2 1,852,692 + Xcc-8004.1921.1 0.13 +0.3 1,852,693 - Xcc-8004.1921.1 0.13 +0.1 1,852,693 - Xcc-8004.1921.1 0.13 +0.3 1,852,785 + Xcc-8004.1921.1 0.17 +0.4 1,852,785 + Xcc-8004.1921.1 0.17 +0.2 1,852,786 - Xcc-8004.1921.1 0.17 -0.3 1,852,786 - Xcc-8004.1921.1 0.17 +0.5 1,852,786 - Xcc-8004.1921.1 0.17 +0.5 1,852,786 - Xcc-8004.1921.1 0.17 +1.5 1,852,786 - Xcc-8004.1921.1 0.17 -0.4 1,852,786 - Xcc-8004.1921.1 0.17 -0.1 1,852,786 - Xcc-8004.1921.1 0.17 -0.3 1,852,947 + Xcc-8004.1921.1 0.24 -0.5 1,852,948 - Xcc-8004.1921.1 0.24 -0.0 1,852,948 - Xcc-8004.1921.1 0.24 -0.1 1,852,980 + Xcc-8004.1921.1 0.26 -0.8 1,852,980 + Xcc-8004.1921.1 0.26 -0.6 1,853,034 + Xcc-8004.1921.1 0.28 +0.1 1,853,034 + Xcc-8004.1921.1 0.28 +0.4 1,853,034 + Xcc-8004.1921.1 0.28 -0.1 1,853,035 - Xcc-8004.1921.1 0.28 +1.2 1,853,035 - Xcc-8004.1921.1 0.28 +1.5 1,853,037 + Xcc-8004.1921.1 0.28 +0.6 1,853,037 + Xcc-8004.1921.1 0.28 +0.5 1,853,037 + Xcc-8004.1921.1 0.28 +0.1 1,853,038 - Xcc-8004.1921.1 0.28 -1.7 1,853,110 - Xcc-8004.1921.1 0.31 +0.8 1,853,110 - Xcc-8004.1921.1 0.31 -0.4 1,853,151 + Xcc-8004.1921.1 0.33 -1.4 1,853,151 + Xcc-8004.1921.1 0.33 +0.7 1,853,151 + Xcc-8004.1921.1 0.33 +0.8 1,853,152 - Xcc-8004.1921.1 0.33 -0.1
Or see this region's nucleotide sequence