Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1906.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1905.1 and Xcc-8004.1906.1 are separated by 28 nucleotidesXcc-8004.1906.1 and Xcc-8004.1908.1 overlap by 4 nucleotidesXcc-8004.1908.1 and Xcc-8004.1909.1 are separated by 10 nucleotides Xcc-8004.1905.1: Xcc-8004.1905.1 - Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO, at 1,838,274 to 1,839,404 Xcc-8004.1905.1 Xcc-8004.1906.1: Xcc-8004.1906.1 - lipoprotein, at 1,839,433 to 1,840,470 Xcc-8004.1906.1 Xcc-8004.1908.1: Xcc-8004.1908.1 - FIG01211507: hypothetical protein, at 1,840,467 to 1,841,369 Xcc-8004.1908.1 Xcc-8004.1909.1: Xcc-8004.1909.1 - FIG01212339: hypothetical protein, at 1,841,380 to 1,841,964 Xcc-8004.1909.1 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -2 -1 0 1 2at 1838.459 kb on + strand, within Xcc-8004.1905.1at 1838.460 kb on - strand, within Xcc-8004.1905.1at 1838.461 kb on + strand, within Xcc-8004.1905.1at 1838.530 kb on + strand, within Xcc-8004.1905.1at 1838.531 kb on - strand, within Xcc-8004.1905.1at 1838.932 kb on + strand, within Xcc-8004.1905.1at 1839.296 kb on - strandat 1839.304 kb on + strandat 1839.305 kb on - strandat 1839.305 kb on - strandat 1839.537 kb on + strand, within Xcc-8004.1906.1at 1839.537 kb on + strand, within Xcc-8004.1906.1at 1839.538 kb on - strand, within Xcc-8004.1906.1at 1839.872 kb on + strand, within Xcc-8004.1906.1at 1840.152 kb on - strand, within Xcc-8004.1906.1at 1840.173 kb on - strand, within Xcc-8004.1906.1at 1840.300 kb on + strand, within Xcc-8004.1906.1at 1840.393 kb on - strandat 1840.393 kb on - strandat 1840.422 kb on + strandat 1840.423 kb on - strandat 1840.534 kb on + strandat 1840.535 kb on - strandat 1840.535 kb on - strandat 1840.573 kb on + strand, within Xcc-8004.1908.1at 1840.574 kb on - strand, within Xcc-8004.1908.1at 1840.880 kb on - strand, within Xcc-8004.1908.1at 1840.972 kb on + strand, within Xcc-8004.1908.1at 1840.976 kb on + strand, within Xcc-8004.1908.1at 1841.026 kb on + strand, within Xcc-8004.1908.1at 1841.026 kb on + strand, within Xcc-8004.1908.1at 1841.027 kb on - strand, within Xcc-8004.1908.1at 1841.027 kb on - strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.166 kb on - strand, within Xcc-8004.1908.1at 1841.284 kb on + strandat 1841.284 kb on + strandat 1841.284 kb on + strandat 1841.285 kb on - strandat 1841.285 kb on - strandat 1841.289 kb on + strandat 1841.289 kb on + strandat 1841.426 kb on + strandat 1841.447 kb on + strand, within Xcc-8004.1909.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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1,838,459 + Xcc-8004.1905.1 0.16 -0.0
1,838,460 - Xcc-8004.1905.1 0.16 +0.4
1,838,461 + Xcc-8004.1905.1 0.17 +0.6
1,838,530 + Xcc-8004.1905.1 0.23 -0.8
1,838,531 - Xcc-8004.1905.1 0.23 -0.3
1,838,932 + Xcc-8004.1905.1 0.58 +1.0
1,839,296 - -0.6
1,839,304 + -1.2
1,839,305 - +0.6
1,839,305 - +0.8
1,839,537 + Xcc-8004.1906.1 0.10 -0.6
1,839,537 + Xcc-8004.1906.1 0.10 -1.8
1,839,538 - Xcc-8004.1906.1 0.10 -1.1
1,839,872 + Xcc-8004.1906.1 0.42 +0.3
1,840,152 - Xcc-8004.1906.1 0.69 -1.8
1,840,173 - Xcc-8004.1906.1 0.71 -0.7
1,840,300 + Xcc-8004.1906.1 0.84 -0.5
1,840,393 - +0.6
1,840,393 - +0.5
1,840,422 + +0.1
1,840,423 - +0.0
1,840,534 + +1.5
1,840,535 - -0.4
1,840,535 - -1.8
1,840,573 + Xcc-8004.1908.1 0.12 +1.1
1,840,574 - Xcc-8004.1908.1 0.12 -0.5
1,840,880 - Xcc-8004.1908.1 0.46 -0.7
1,840,972 + Xcc-8004.1908.1 0.56 -0.4
1,840,976 + Xcc-8004.1908.1 0.56 -0.3
1,841,026 + Xcc-8004.1908.1 0.62 -0.2
1,841,026 + Xcc-8004.1908.1 0.62 +1.8
1,841,027 - Xcc-8004.1908.1 0.62 +0.3
1,841,027 - Xcc-8004.1908.1 0.62 -0.3
1,841,158 + Xcc-8004.1908.1 0.77 -0.2
1,841,158 + Xcc-8004.1908.1 0.77 -0.1
1,841,158 + Xcc-8004.1908.1 0.77 -0.9
1,841,158 + Xcc-8004.1908.1 0.77 -0.6
1,841,158 + Xcc-8004.1908.1 0.77 +0.1
1,841,159 - Xcc-8004.1908.1 0.77 -0.8
1,841,159 - Xcc-8004.1908.1 0.77 -0.6
1,841,159 - Xcc-8004.1908.1 0.77 -0.4
1,841,159 - Xcc-8004.1908.1 0.77 +1.0
1,841,166 - Xcc-8004.1908.1 0.77 +0.3
1,841,284 + -0.1
1,841,284 + +0.3
1,841,284 + +0.3
1,841,285 - +0.8
1,841,285 - +1.3
1,841,289 + +0.5
1,841,289 + -0.7
1,841,426 + +1.3
1,841,447 + Xcc-8004.1909.1 0.11 -0.4

Or see this region's nucleotide sequence