Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1806.1 and Xcc-8004.1807.1 are separated by 24 nucleotides Xcc-8004.1807.1 and Xcc-8004.1808.1 overlap by 4 nucleotides Xcc-8004.1808.1 and Xcc-8004.1809.1 are separated by 146 nucleotides Xcc-8004.1809.1 and Xcc-8004.1810.1 are separated by 179 nucleotides
Xcc-8004.1806.1: Xcc-8004.1806.1 - MFS transporter, at 1,742,672 to 1,743,880
Xcc-8004.1806.1
Xcc-8004.1807.1: Xcc-8004.1807.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,743,905 to 1,744,150
Xcc-8004.1807.1
Xcc-8004.1808.1: Xcc-8004.1808.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,744,147 to 1,744,494
Xcc-8004.1808.1
Xcc-8004.1809.1: Xcc-8004.1809.1 - extracellular serine protease, at 1,744,641 to 1,745,030
Xcc-8004.1809.1
Xcc-8004.1810.1: Xcc-8004.1810.1 - FIG01210140: hypothetical protein, at 1,745,210 to 1,745,830
Xcc-8004.1810.1
Position (kb) 1744
1745 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1743.333 kb on - strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.685 kb on + strand, within Xcc-8004.1806.1 at 1744.264 kb on + strand, within Xcc-8004.1808.1 at 1744.265 kb on - strand, within Xcc-8004.1808.1 at 1744.265 kb on - strand, within Xcc-8004.1808.1 at 1744.442 kb on + strand, within Xcc-8004.1808.1 at 1744.517 kb on + strand at 1744.518 kb on - strand at 1744.590 kb on - strand at 1744.632 kb on - strand at 1744.632 kb on - strand at 1744.642 kb on + strand at 1744.643 kb on - strand at 1744.643 kb on - strand at 1744.643 kb on - strand at 1744.905 kb on + strand, within Xcc-8004.1809.1 at 1744.906 kb on - strand, within Xcc-8004.1809.1 at 1745.022 kb on + strand at 1745.023 kb on - strand at 1745.023 kb on - strand at 1745.097 kb on - strand at 1745.336 kb on - strand, within Xcc-8004.1810.1 at 1745.351 kb on - strand, within Xcc-8004.1810.1 at 1745.351 kb on - strand, within Xcc-8004.1810.1 at 1745.351 kb on - strand, within Xcc-8004.1810.1 at 1745.352 kb on + strand, within Xcc-8004.1810.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,743,333 - Xcc-8004.1806.1 0.55 -0.2 1,743,359 + Xcc-8004.1806.1 0.57 -0.4 1,743,359 + Xcc-8004.1806.1 0.57 -1.1 1,743,359 + Xcc-8004.1806.1 0.57 +0.8 1,743,359 + Xcc-8004.1806.1 0.57 +1.8 1,743,359 + Xcc-8004.1806.1 0.57 +0.2 1,743,359 + Xcc-8004.1806.1 0.57 +1.9 1,743,359 + Xcc-8004.1806.1 0.57 -0.5 1,743,359 + Xcc-8004.1806.1 0.57 -0.0 1,743,359 + Xcc-8004.1806.1 0.57 -0.2 1,743,360 - Xcc-8004.1806.1 0.57 -0.6 1,743,360 - Xcc-8004.1806.1 0.57 -1.2 1,743,360 - Xcc-8004.1806.1 0.57 +0.4 1,743,360 - Xcc-8004.1806.1 0.57 +0.1 1,743,360 - Xcc-8004.1806.1 0.57 -0.5 1,743,360 - Xcc-8004.1806.1 0.57 +0.4 1,743,360 - Xcc-8004.1806.1 0.57 -1.4 1,743,362 - Xcc-8004.1806.1 0.57 +0.4 1,743,362 - Xcc-8004.1806.1 0.57 +0.1 1,743,362 - Xcc-8004.1806.1 0.57 -1.5 1,743,685 + Xcc-8004.1806.1 0.84 -0.8 1,744,264 + Xcc-8004.1808.1 0.34 -0.5 1,744,265 - Xcc-8004.1808.1 0.34 -0.7 1,744,265 - Xcc-8004.1808.1 0.34 -0.5 1,744,442 + Xcc-8004.1808.1 0.85 -0.2 1,744,517 + -0.6 1,744,518 - +0.6 1,744,590 - -1.0 1,744,632 - -0.5 1,744,632 - -0.1 1,744,642 + +1.6 1,744,643 - +0.9 1,744,643 - +0.8 1,744,643 - +0.8 1,744,905 + Xcc-8004.1809.1 0.68 +0.9 1,744,906 - Xcc-8004.1809.1 0.68 -1.9 1,745,022 + +0.3 1,745,023 - +0.1 1,745,023 - +0.1 1,745,097 - +0.0 1,745,336 - Xcc-8004.1810.1 0.20 -0.5 1,745,351 - Xcc-8004.1810.1 0.23 +0.4 1,745,351 - Xcc-8004.1810.1 0.23 +0.1 1,745,351 - Xcc-8004.1810.1 0.23 -1.2 1,745,352 + Xcc-8004.1810.1 0.23 +1.0
Or see this region's nucleotide sequence