Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1789.1 and Xcc-8004.1790.1 are separated by 13 nucleotides Xcc-8004.1790.1 and Xcc-8004.1791.1 are separated by 237 nucleotides Xcc-8004.1791.1 and Xcc-8004.1792.1 are separated by 292 nucleotides
Xcc-8004.1789.1: Xcc-8004.1789.1 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 1,723,717 to 1,725,120
Xcc-8004.1789.1
Xcc-8004.1790.1: Xcc-8004.1790.1 - Zinc uptake regulation protein ZUR, at 1,725,134 to 1,725,652
Xcc-8004.1790.1
Xcc-8004.1791.1: Xcc-8004.1791.1 - hypothetical protein, at 1,725,890 to 1,726,159
Xcc-8004.1791.1
Xcc-8004.1792.1: Xcc-8004.1792.1 - Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family, at 1,726,452 to 1,727,069
Xcc-8004.1792.1
Position (kb) 1725
1726 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1725.133 kb on + strand at 1725.133 kb on + strand at 1725.133 kb on + strand at 1725.285 kb on + strand, within Xcc-8004.1790.1 at 1725.285 kb on + strand, within Xcc-8004.1790.1 at 1725.286 kb on - strand, within Xcc-8004.1790.1 at 1725.286 kb on - strand, within Xcc-8004.1790.1 at 1725.286 kb on - strand, within Xcc-8004.1790.1 at 1725.286 kb on - strand, within Xcc-8004.1790.1 at 1725.286 kb on - strand, within Xcc-8004.1790.1 at 1725.326 kb on + strand, within Xcc-8004.1790.1 at 1725.685 kb on + strand at 1725.685 kb on + strand at 1725.685 kb on + strand at 1725.685 kb on + strand at 1725.686 kb on - strand at 1725.686 kb on - strand at 1725.686 kb on - strand at 1725.727 kb on + strand at 1725.728 kb on - strand at 1725.847 kb on + strand at 1725.848 kb on - strand at 1725.848 kb on - strand at 1725.876 kb on + strand at 1725.896 kb on + strand at 1725.934 kb on + strand, within Xcc-8004.1791.1 at 1725.934 kb on + strand, within Xcc-8004.1791.1 at 1725.935 kb on - strand, within Xcc-8004.1791.1 at 1725.935 kb on - strand, within Xcc-8004.1791.1 at 1725.935 kb on - strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.948 kb on + strand, within Xcc-8004.1791.1 at 1725.949 kb on - strand, within Xcc-8004.1791.1 at 1725.949 kb on - strand, within Xcc-8004.1791.1 at 1725.949 kb on - strand, within Xcc-8004.1791.1 at 1725.949 kb on - strand, within Xcc-8004.1791.1 at 1725.952 kb on + strand, within Xcc-8004.1791.1 at 1725.952 kb on + strand, within Xcc-8004.1791.1 at 1725.952 kb on + strand, within Xcc-8004.1791.1 at 1725.952 kb on + strand, within Xcc-8004.1791.1 at 1725.952 kb on + strand, within Xcc-8004.1791.1 at 1725.953 kb on - strand, within Xcc-8004.1791.1 at 1725.953 kb on - strand, within Xcc-8004.1791.1 at 1725.953 kb on - strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.975 kb on + strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1725.976 kb on - strand, within Xcc-8004.1791.1 at 1726.024 kb on - strand, within Xcc-8004.1791.1 at 1726.024 kb on - strand, within Xcc-8004.1791.1 at 1726.058 kb on + strand, within Xcc-8004.1791.1 at 1726.059 kb on - strand, within Xcc-8004.1791.1 at 1726.198 kb on - strand at 1726.198 kb on - strand at 1726.198 kb on - strand at 1726.198 kb on - strand at 1726.198 kb on - strand at 1726.289 kb on + strand at 1726.289 kb on + strand at 1726.289 kb on + strand at 1726.289 kb on + strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.290 kb on - strand at 1726.305 kb on + strand at 1726.526 kb on - strand, within Xcc-8004.1792.1 at 1726.526 kb on - strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.616 kb on + strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1 at 1726.617 kb on - strand, within Xcc-8004.1792.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,725,133 + +1.1 1,725,133 + +0.0 1,725,133 + +1.6 1,725,285 + Xcc-8004.1790.1 0.29 -2.2 1,725,285 + Xcc-8004.1790.1 0.29 -0.8 1,725,286 - Xcc-8004.1790.1 0.29 -0.6 1,725,286 - Xcc-8004.1790.1 0.29 -0.3 1,725,286 - Xcc-8004.1790.1 0.29 -1.2 1,725,286 - Xcc-8004.1790.1 0.29 -2.1 1,725,286 - Xcc-8004.1790.1 0.29 +0.3 1,725,326 + Xcc-8004.1790.1 0.37 -1.0 1,725,685 + +0.1 1,725,685 + +1.3 1,725,685 + +1.4 1,725,685 + +0.5 1,725,686 - +0.3 1,725,686 - +1.5 1,725,686 - +1.0 1,725,727 + +0.6 1,725,728 - -0.1 1,725,847 + +0.8 1,725,848 - -0.3 1,725,848 - +0.4 1,725,876 + +0.3 1,725,896 + -1.2 1,725,934 + Xcc-8004.1791.1 0.16 +0.4 1,725,934 + Xcc-8004.1791.1 0.16 +0.2 1,725,935 - Xcc-8004.1791.1 0.17 -0.8 1,725,935 - Xcc-8004.1791.1 0.17 +0.7 1,725,935 - Xcc-8004.1791.1 0.17 +0.1 1,725,948 + Xcc-8004.1791.1 0.21 +0.5 1,725,948 + Xcc-8004.1791.1 0.21 -2.0 1,725,948 + Xcc-8004.1791.1 0.21 +0.4 1,725,948 + Xcc-8004.1791.1 0.21 -0.9 1,725,948 + Xcc-8004.1791.1 0.21 -0.2 1,725,948 + Xcc-8004.1791.1 0.21 +0.1 1,725,948 + Xcc-8004.1791.1 0.21 +0.5 1,725,948 + Xcc-8004.1791.1 0.21 -1.7 1,725,949 - Xcc-8004.1791.1 0.22 +0.1 1,725,949 - Xcc-8004.1791.1 0.22 -1.4 1,725,949 - Xcc-8004.1791.1 0.22 +0.1 1,725,949 - Xcc-8004.1791.1 0.22 +0.2 1,725,952 + Xcc-8004.1791.1 0.23 +0.9 1,725,952 + Xcc-8004.1791.1 0.23 -2.4 1,725,952 + Xcc-8004.1791.1 0.23 +1.4 1,725,952 + Xcc-8004.1791.1 0.23 -0.7 1,725,952 + Xcc-8004.1791.1 0.23 +2.1 1,725,953 - Xcc-8004.1791.1 0.23 +0.7 1,725,953 - Xcc-8004.1791.1 0.23 +0.3 1,725,953 - Xcc-8004.1791.1 0.23 -1.4 1,725,975 + Xcc-8004.1791.1 0.31 +0.6 1,725,975 + Xcc-8004.1791.1 0.31 -0.2 1,725,975 + Xcc-8004.1791.1 0.31 -1.5 1,725,975 + Xcc-8004.1791.1 0.31 +0.8 1,725,975 + Xcc-8004.1791.1 0.31 -2.4 1,725,975 + Xcc-8004.1791.1 0.31 -2.2 1,725,975 + Xcc-8004.1791.1 0.31 +1.1 1,725,976 - Xcc-8004.1791.1 0.32 +1.0 1,725,976 - Xcc-8004.1791.1 0.32 +0.6 1,725,976 - Xcc-8004.1791.1 0.32 +0.7 1,725,976 - Xcc-8004.1791.1 0.32 -1.0 1,725,976 - Xcc-8004.1791.1 0.32 -0.7 1,725,976 - Xcc-8004.1791.1 0.32 +1.1 1,725,976 - Xcc-8004.1791.1 0.32 +0.3 1,725,976 - Xcc-8004.1791.1 0.32 -0.8 1,726,024 - Xcc-8004.1791.1 0.50 -0.2 1,726,024 - Xcc-8004.1791.1 0.50 +1.0 1,726,058 + Xcc-8004.1791.1 0.62 +0.4 1,726,059 - Xcc-8004.1791.1 0.63 -1.0 1,726,198 - -1.1 1,726,198 - +0.7 1,726,198 - +0.3 1,726,198 - -1.2 1,726,198 - +1.3 1,726,289 + -2.0 1,726,289 + +0.1 1,726,289 + -2.0 1,726,289 + +0.8 1,726,290 - +0.6 1,726,290 - -0.8 1,726,290 - +1.0 1,726,290 - -0.6 1,726,290 - +1.0 1,726,290 - +0.9 1,726,290 - -0.8 1,726,290 - -0.5 1,726,305 + +0.4 1,726,526 - Xcc-8004.1792.1 0.12 +1.1 1,726,526 - Xcc-8004.1792.1 0.12 +0.7 1,726,616 + Xcc-8004.1792.1 0.27 +0.3 1,726,616 + Xcc-8004.1792.1 0.27 +0.2 1,726,616 + Xcc-8004.1792.1 0.27 -0.4 1,726,616 + Xcc-8004.1792.1 0.27 +0.4 1,726,616 + Xcc-8004.1792.1 0.27 -0.1 1,726,616 + Xcc-8004.1792.1 0.27 -1.2 1,726,617 - Xcc-8004.1792.1 0.27 -2.2 1,726,617 - Xcc-8004.1792.1 0.27 +1.0 1,726,617 - Xcc-8004.1792.1 0.27 -0.6 1,726,617 - Xcc-8004.1792.1 0.27 +1.2 1,726,617 - Xcc-8004.1792.1 0.27 -0.9 1,726,617 - Xcc-8004.1792.1 0.27 -0.8 1,726,617 - Xcc-8004.1792.1 0.27 +3.3 1,726,617 - Xcc-8004.1792.1 0.27 -1.3
Or see this region's nucleotide sequence