Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.171.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.170.1 and Xcc-8004.171.1 overlap by 10 nucleotidesXcc-8004.171.1 and Xcc-8004.172.1 are separated by 447 nucleotides Xcc-8004.170.1: Xcc-8004.170.1 - Mobile element protein, at 162,213 to 163,193 Xcc-8004.170.1 Xcc-8004.171.1: Xcc-8004.171.1 - hypothetical protein, at 163,184 to 163,294 Xcc-8004.171.1 Xcc-8004.172.1: Xcc-8004.172.1 - Mobile element protein, at 163,742 to 164,440 Xcc-8004.172.1 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1at 163.229 kb on + strand, within Xcc-8004.171.1at 163.302 kb on + strandat 163.302 kb on + strandat 163.324 kb on - strandat 163.324 kb on - strandat 163.338 kb on + strandat 163.347 kb on + strandat 163.347 kb on + strandat 163.347 kb on + strandat 163.348 kb on - strandat 163.349 kb on + strandat 163.350 kb on - strandat 163.350 kb on - strandat 163.350 kb on - strandat 163.350 kb on - strandat 163.439 kb on + strandat 163.439 kb on + strandat 163.527 kb on + strandat 163.539 kb on - strandat 163.563 kb on + strandat 163.597 kb on - strandat 163.604 kb on - strandat 163.607 kb on + strandat 163.608 kb on - strandat 163.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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163,229 + Xcc-8004.171.1 0.41 -1.3
163,302 + +0.0
163,302 + +0.3
163,324 - -0.3
163,324 - +0.8
163,338 + +1.2
163,347 + +0.1
163,347 + -0.3
163,347 + -0.4
163,348 - +0.4
163,349 + -0.2
163,350 - -0.5
163,350 - -0.7
163,350 - -2.2
163,350 - -0.5
163,439 + -2.2
163,439 + +0.0
163,527 + +0.2
163,539 - -0.2
163,563 + +0.9
163,597 - -2.3
163,604 - +0.6
163,607 + +0.0
163,608 - +0.1
163,610 + -0.2

Or see this region's nucleotide sequence