Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1696.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1694.1 and Xcc-8004.1695.1 are separated by 343 nucleotidesXcc-8004.1695.1 and Xcc-8004.1696.1 overlap by 4 nucleotidesXcc-8004.1696.1 and Xcc-8004.1697.1 are separated by 83 nucleotides Xcc-8004.1694.1: Xcc-8004.1694.1 - Ferrichrome-iron receptor, at 1,626,576 to 1,628,894 Xcc-8004.1694.1 Xcc-8004.1695.1: Xcc-8004.1695.1 - Ferredoxin, 2Fe-2S, at 1,629,238 to 1,629,567 Xcc-8004.1695.1 Xcc-8004.1696.1: Xcc-8004.1696.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 1,629,564 to 1,630,253 Xcc-8004.1696.1 Xcc-8004.1697.1: Xcc-8004.1697.1 - Cysteine desulfurase (EC 2.8.1.7), SufS subfamily, at 1,630,337 to 1,631,578 Xcc-8004.1697.1 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -2 -1 0 1at 1628.734 kb on + strandat 1628.734 kb on + strandat 1628.734 kb on + strandat 1628.734 kb on + strandat 1628.735 kb on - strandat 1628.735 kb on - strandat 1628.735 kb on - strandat 1629.110 kb on + strandat 1629.110 kb on + strandat 1629.137 kb on - strandat 1629.181 kb on + strandat 1629.181 kb on + strandat 1629.181 kb on + strandat 1629.181 kb on + strandat 1629.182 kb on - strandat 1629.182 kb on - strandat 1629.182 kb on - strandat 1629.182 kb on - strandat 1629.182 kb on - strandat 1629.698 kb on - strand, within Xcc-8004.1696.1at 1629.698 kb on - strand, within Xcc-8004.1696.1at 1629.851 kb on - strand, within Xcc-8004.1696.1at 1630.259 kb on + strandat 1630.259 kb on + strandat 1630.260 kb on - strandat 1630.260 kb on - strandat 1630.260 kb on - strandat 1630.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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1,628,734 + -0.3
1,628,734 + +0.0
1,628,734 + -0.8
1,628,734 + -1.5
1,628,735 - -0.8
1,628,735 - -0.2
1,628,735 - +0.6
1,629,110 + +0.8
1,629,110 + -0.6
1,629,137 - -1.3
1,629,181 + -0.2
1,629,181 + -0.4
1,629,181 + -1.8
1,629,181 + +1.2
1,629,182 - +0.8
1,629,182 - +1.2
1,629,182 - -0.5
1,629,182 - -0.2
1,629,182 - +0.7
1,629,698 - Xcc-8004.1696.1 0.19 -1.1
1,629,698 - Xcc-8004.1696.1 0.19 -1.5
1,629,851 - Xcc-8004.1696.1 0.42 +0.8
1,630,259 + +1.4
1,630,259 + +0.8
1,630,260 - +1.0
1,630,260 - -0.1
1,630,260 - +1.1
1,630,260 - -0.1

Or see this region's nucleotide sequence