Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1565.1 and Xcc-8004.1566.1 are separated by 3 nucleotides Xcc-8004.1566.1 and Xcc-8004.1567.1 are separated by 207 nucleotides
Xcc-8004.1565.1: Xcc-8004.1565.1 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,503,714 to 1,504,679
Xcc-8004.1565.1
Xcc-8004.1566.1: Xcc-8004.1566.1 - Putative activity regulator of membrane protease YbbK, at 1,504,683 to 1,505,117
Xcc-8004.1566.1
Xcc-8004.1567.1: Xcc-8004.1567.1 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 1,505,325 to 1,506,434
Xcc-8004.1567.1
Position (kb) 1504
1505
1506 Strain fitness (log2 ratio) -1
0
1
2 at 1503.831 kb on + strand, within Xcc-8004.1565.1 at 1503.832 kb on - strand, within Xcc-8004.1565.1 at 1503.879 kb on + strand, within Xcc-8004.1565.1 at 1503.879 kb on + strand, within Xcc-8004.1565.1 at 1504.068 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.480 kb on - strand, within Xcc-8004.1565.1 at 1504.497 kb on + strand, within Xcc-8004.1565.1 at 1504.658 kb on - strand at 1504.658 kb on - strand at 1504.658 kb on - strand at 1504.881 kb on + strand, within Xcc-8004.1566.1 at 1504.881 kb on + strand, within Xcc-8004.1566.1 at 1504.882 kb on - strand, within Xcc-8004.1566.1 at 1505.155 kb on + strand at 1505.526 kb on + strand, within Xcc-8004.1567.1 at 1505.577 kb on + strand, within Xcc-8004.1567.1 at 1505.577 kb on + strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.578 kb on - strand, within Xcc-8004.1567.1 at 1505.628 kb on + strand, within Xcc-8004.1567.1 at 1505.628 kb on + strand, within Xcc-8004.1567.1 at 1505.629 kb on - strand, within Xcc-8004.1567.1 at 1505.629 kb on - strand, within Xcc-8004.1567.1 at 1505.904 kb on + strand, within Xcc-8004.1567.1 at 1506.078 kb on + strand, within Xcc-8004.1567.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,503,831 + Xcc-8004.1565.1 0.12 -0.4 1,503,832 - Xcc-8004.1565.1 0.12 +0.2 1,503,879 + Xcc-8004.1565.1 0.17 +0.7 1,503,879 + Xcc-8004.1565.1 0.17 +0.0 1,504,068 - Xcc-8004.1565.1 0.37 -0.4 1,504,480 - Xcc-8004.1565.1 0.79 -0.3 1,504,480 - Xcc-8004.1565.1 0.79 -0.4 1,504,480 - Xcc-8004.1565.1 0.79 -0.2 1,504,480 - Xcc-8004.1565.1 0.79 -0.2 1,504,480 - Xcc-8004.1565.1 0.79 -0.0 1,504,497 + Xcc-8004.1565.1 0.81 +1.4 1,504,658 - +0.2 1,504,658 - +0.4 1,504,658 - -0.7 1,504,881 + Xcc-8004.1566.1 0.46 -0.4 1,504,881 + Xcc-8004.1566.1 0.46 -0.4 1,504,882 - Xcc-8004.1566.1 0.46 -1.5 1,505,155 + +1.0 1,505,526 + Xcc-8004.1567.1 0.18 +0.0 1,505,577 + Xcc-8004.1567.1 0.23 +0.5 1,505,577 + Xcc-8004.1567.1 0.23 -0.6 1,505,578 - Xcc-8004.1567.1 0.23 -1.6 1,505,578 - Xcc-8004.1567.1 0.23 +2.4 1,505,578 - Xcc-8004.1567.1 0.23 -0.9 1,505,578 - Xcc-8004.1567.1 0.23 -0.5 1,505,578 - Xcc-8004.1567.1 0.23 +1.5 1,505,628 + Xcc-8004.1567.1 0.27 +0.8 1,505,628 + Xcc-8004.1567.1 0.27 -1.3 1,505,629 - Xcc-8004.1567.1 0.27 -1.1 1,505,629 - Xcc-8004.1567.1 0.27 -0.2 1,505,904 + Xcc-8004.1567.1 0.52 -0.1 1,506,078 + Xcc-8004.1567.1 0.68 -1.1
Or see this region's nucleotide sequence