Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1398.1 and Xcc-8004.1399.1 overlap by 4 nucleotides Xcc-8004.1399.1 and Xcc-8004.1400.1 overlap by 4 nucleotides Xcc-8004.1400.1 and Xcc-8004.1401.1 are separated by 19 nucleotides
Xcc-8004.1398.1: Xcc-8004.1398.1 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 1,326,385 to 1,327,431
Xcc-8004.1398.1
Xcc-8004.1399.1: Xcc-8004.1399.1 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 1,327,428 to 1,327,997
Xcc-8004.1399.1
Xcc-8004.1400.1: Xcc-8004.1400.1 - Cobalamin synthase (EC 2.7.8.26), at 1,327,994 to 1,328,728
Xcc-8004.1400.1
Xcc-8004.1401.1: Xcc-8004.1401.1 - hypothetical protein, at 1,328,748 to 1,329,728
Xcc-8004.1401.1
Position (kb) 1327
1328 Strain fitness (log2 ratio) -1
0
1 at 1326.574 kb on + strand, within Xcc-8004.1398.1 at 1326.574 kb on + strand, within Xcc-8004.1398.1 at 1326.575 kb on - strand, within Xcc-8004.1398.1 at 1326.575 kb on - strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.131 kb on + strand, within Xcc-8004.1398.1 at 1327.660 kb on - strand, within Xcc-8004.1399.1 at 1327.684 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.718 kb on - strand at 1328.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,326,574 + Xcc-8004.1398.1 0.18 +0.0 1,326,574 + Xcc-8004.1398.1 0.18 +0.4 1,326,575 - Xcc-8004.1398.1 0.18 -0.9 1,326,575 - Xcc-8004.1398.1 0.18 +0.9 1,327,129 + Xcc-8004.1398.1 0.71 +1.6 1,327,129 + Xcc-8004.1398.1 0.71 +1.2 1,327,129 + Xcc-8004.1398.1 0.71 -1.1 1,327,129 + Xcc-8004.1398.1 0.71 -0.3 1,327,130 - Xcc-8004.1398.1 0.71 +0.5 1,327,130 - Xcc-8004.1398.1 0.71 -0.5 1,327,130 - Xcc-8004.1398.1 0.71 +1.1 1,327,130 - Xcc-8004.1398.1 0.71 +0.2 1,327,130 - Xcc-8004.1398.1 0.71 -0.8 1,327,131 + Xcc-8004.1398.1 0.71 -0.6 1,327,660 - Xcc-8004.1399.1 0.41 -0.8 1,327,684 + Xcc-8004.1399.1 0.45 -0.1 1,327,830 + Xcc-8004.1399.1 0.71 -0.2 1,327,830 + Xcc-8004.1399.1 0.71 -1.0 1,327,830 + Xcc-8004.1399.1 0.71 +0.1 1,327,830 + Xcc-8004.1399.1 0.71 -0.7 1,327,830 + Xcc-8004.1399.1 0.71 -0.8 1,327,830 + Xcc-8004.1399.1 0.71 +0.4 1,327,831 - Xcc-8004.1399.1 0.71 +0.5 1,327,831 - Xcc-8004.1399.1 0.71 -0.9 1,327,831 - Xcc-8004.1399.1 0.71 -1.1 1,328,462 + Xcc-8004.1400.1 0.64 -0.3 1,328,462 + Xcc-8004.1400.1 0.64 +0.5 1,328,462 + Xcc-8004.1400.1 0.64 -0.8 1,328,717 + +0.2 1,328,717 + -0.8 1,328,717 + +1.5 1,328,717 + -0.3 1,328,718 - -0.5 1,328,727 - +0.2
Or see this region's nucleotide sequence