Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1378.1 and Xcc-8004.1379.1 are separated by 193 nucleotides Xcc-8004.1379.1 and Xcc-8004.1380.1 are separated by 43 nucleotides Xcc-8004.1380.1 and Xcc-8004.1381.1 are separated by 172 nucleotides Xcc-8004.1381.1 and Xcc-8004.1382.1 are separated by 153 nucleotides
Xcc-8004.1378.1: Xcc-8004.1378.1 - FIG01212847: hypothetical protein, at 1,308,200 to 1,309,270
Xcc-8004.1378.1
Xcc-8004.1379.1: Xcc-8004.1379.1 - Glutathione S-transferase, at 1,309,464 to 1,310,171
Xcc-8004.1379.1
Xcc-8004.1380.1: Xcc-8004.1380.1 - COG2827: putative endonuclease containing a URI domain, at 1,310,215 to 1,310,523
Xcc-8004.1380.1
Xcc-8004.1381.1: Xcc-8004.1381.1 - ABC transporter ATP-binding subunit, at 1,310,696 to 1,311,109
Xcc-8004.1381.1
Xcc-8004.1382.1: Xcc-8004.1382.1 - ClpB protein, at 1,311,263 to 1,313,848
Xcc-8004.1382.1
Position (kb) 1310
1311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1309.275 kb on + strand at 1309.275 kb on + strand at 1309.275 kb on + strand at 1309.276 kb on - strand at 1309.279 kb on + strand at 1309.279 kb on + strand at 1309.279 kb on + strand at 1309.280 kb on - strand at 1309.280 kb on - strand at 1309.280 kb on - strand at 1309.280 kb on - strand at 1309.280 kb on - strand at 1309.280 kb on - strand at 1309.486 kb on + strand at 1309.540 kb on + strand, within Xcc-8004.1379.1 at 1309.541 kb on - strand, within Xcc-8004.1379.1 at 1309.595 kb on + strand, within Xcc-8004.1379.1 at 1309.595 kb on + strand, within Xcc-8004.1379.1 at 1309.595 kb on + strand, within Xcc-8004.1379.1 at 1309.595 kb on + strand, within Xcc-8004.1379.1 at 1309.598 kb on + strand, within Xcc-8004.1379.1 at 1309.636 kb on + strand, within Xcc-8004.1379.1 at 1309.636 kb on + strand, within Xcc-8004.1379.1 at 1309.636 kb on + strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.637 kb on - strand, within Xcc-8004.1379.1 at 1309.668 kb on + strand, within Xcc-8004.1379.1 at 1309.668 kb on + strand, within Xcc-8004.1379.1 at 1309.668 kb on + strand, within Xcc-8004.1379.1 at 1309.668 kb on + strand, within Xcc-8004.1379.1 at 1309.669 kb on - strand, within Xcc-8004.1379.1 at 1309.678 kb on + strand, within Xcc-8004.1379.1 at 1309.678 kb on + strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.679 kb on - strand, within Xcc-8004.1379.1 at 1309.736 kb on - strand, within Xcc-8004.1379.1 at 1309.810 kb on + strand, within Xcc-8004.1379.1 at 1309.811 kb on - strand, within Xcc-8004.1379.1 at 1309.811 kb on - strand, within Xcc-8004.1379.1 at 1309.813 kb on + strand, within Xcc-8004.1379.1 at 1309.813 kb on + strand, within Xcc-8004.1379.1 at 1309.814 kb on - strand, within Xcc-8004.1379.1 at 1309.814 kb on - strand, within Xcc-8004.1379.1 at 1310.086 kb on + strand, within Xcc-8004.1379.1 at 1310.087 kb on - strand, within Xcc-8004.1379.1 at 1310.152 kb on + strand at 1310.152 kb on + strand at 1310.153 kb on - strand at 1310.153 kb on - strand at 1310.153 kb on - strand at 1310.155 kb on + strand at 1310.155 kb on + strand at 1310.155 kb on + strand at 1310.155 kb on + strand at 1310.156 kb on - strand at 1310.156 kb on - strand at 1310.156 kb on - strand at 1310.202 kb on - strand at 1310.468 kb on + strand, within Xcc-8004.1380.1 at 1310.468 kb on + strand, within Xcc-8004.1380.1 at 1310.468 kb on + strand, within Xcc-8004.1380.1 at 1310.495 kb on + strand at 1310.495 kb on + strand at 1310.495 kb on + strand at 1310.495 kb on + strand at 1310.495 kb on + strand at 1310.496 kb on - strand at 1310.496 kb on - strand at 1310.496 kb on - strand at 1310.616 kb on - strand at 1310.634 kb on + strand at 1310.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,309,275 + +0.5 1,309,275 + +0.4 1,309,275 + +1.2 1,309,276 - +0.6 1,309,279 + -0.1 1,309,279 + -0.1 1,309,279 + +0.7 1,309,280 - +0.4 1,309,280 - -0.6 1,309,280 - +1.3 1,309,280 - +0.7 1,309,280 - +1.0 1,309,280 - -1.1 1,309,486 + +0.2 1,309,540 + Xcc-8004.1379.1 0.11 -0.3 1,309,541 - Xcc-8004.1379.1 0.11 -1.6 1,309,595 + Xcc-8004.1379.1 0.19 -1.2 1,309,595 + Xcc-8004.1379.1 0.19 -0.1 1,309,595 + Xcc-8004.1379.1 0.19 -0.3 1,309,595 + Xcc-8004.1379.1 0.19 +1.1 1,309,598 + Xcc-8004.1379.1 0.19 +2.0 1,309,636 + Xcc-8004.1379.1 0.24 +0.1 1,309,636 + Xcc-8004.1379.1 0.24 -0.9 1,309,636 + Xcc-8004.1379.1 0.24 +0.6 1,309,637 - Xcc-8004.1379.1 0.24 +1.1 1,309,637 - Xcc-8004.1379.1 0.24 +0.2 1,309,637 - Xcc-8004.1379.1 0.24 +0.7 1,309,637 - Xcc-8004.1379.1 0.24 +1.0 1,309,637 - Xcc-8004.1379.1 0.24 +0.7 1,309,637 - Xcc-8004.1379.1 0.24 -1.2 1,309,637 - Xcc-8004.1379.1 0.24 +1.0 1,309,668 + Xcc-8004.1379.1 0.29 +0.3 1,309,668 + Xcc-8004.1379.1 0.29 +0.4 1,309,668 + Xcc-8004.1379.1 0.29 -0.6 1,309,668 + Xcc-8004.1379.1 0.29 -0.4 1,309,669 - Xcc-8004.1379.1 0.29 -0.4 1,309,678 + Xcc-8004.1379.1 0.30 -1.1 1,309,678 + Xcc-8004.1379.1 0.30 -0.4 1,309,679 - Xcc-8004.1379.1 0.30 -0.2 1,309,679 - Xcc-8004.1379.1 0.30 +0.2 1,309,679 - Xcc-8004.1379.1 0.30 -0.3 1,309,679 - Xcc-8004.1379.1 0.30 -0.3 1,309,679 - Xcc-8004.1379.1 0.30 +0.7 1,309,679 - Xcc-8004.1379.1 0.30 -0.3 1,309,679 - Xcc-8004.1379.1 0.30 +0.1 1,309,736 - Xcc-8004.1379.1 0.38 +0.7 1,309,810 + Xcc-8004.1379.1 0.49 +0.2 1,309,811 - Xcc-8004.1379.1 0.49 -2.2 1,309,811 - Xcc-8004.1379.1 0.49 -0.1 1,309,813 + Xcc-8004.1379.1 0.49 +1.3 1,309,813 + Xcc-8004.1379.1 0.49 -0.4 1,309,814 - Xcc-8004.1379.1 0.49 -0.7 1,309,814 - Xcc-8004.1379.1 0.49 +0.1 1,310,086 + Xcc-8004.1379.1 0.88 +0.1 1,310,087 - Xcc-8004.1379.1 0.88 -0.4 1,310,152 + +1.5 1,310,152 + +0.1 1,310,153 - -0.6 1,310,153 - +0.1 1,310,153 - +0.7 1,310,155 + +0.5 1,310,155 + +1.1 1,310,155 + -0.3 1,310,155 + -1.2 1,310,156 - -0.3 1,310,156 - +0.4 1,310,156 - +0.1 1,310,202 - +0.7 1,310,468 + Xcc-8004.1380.1 0.82 -0.3 1,310,468 + Xcc-8004.1380.1 0.82 -1.9 1,310,468 + Xcc-8004.1380.1 0.82 -0.3 1,310,495 + -0.7 1,310,495 + +0.4 1,310,495 + +0.7 1,310,495 + -0.4 1,310,495 + +0.4 1,310,496 - -0.9 1,310,496 - -1.1 1,310,496 - -1.9 1,310,616 - -0.9 1,310,634 + +2.7 1,310,634 + -1.3
Or see this region's nucleotide sequence