Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1263.1 and Xcc-8004.1264.1 are separated by 15 nucleotides Xcc-8004.1264.1 and Xcc-8004.1265.1 are separated by 100 nucleotides
Xcc-8004.1263.1: Xcc-8004.1263.1 - hypothetical protein, at 1,200,471 to 1,203,146
Xcc-8004.1263.1
Xcc-8004.1264.1: Xcc-8004.1264.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 1,203,162 to 1,203,740
Xcc-8004.1264.1
Xcc-8004.1265.1: Xcc-8004.1265.1 - sodium/alanine symporter family protein, at 1,203,841 to 1,205,334
Xcc-8004.1265.1
Position (kb) 1203
1204 Strain fitness (log2 ratio) -1
0
1
2 at 1202.172 kb on + strand, within Xcc-8004.1263.1 at 1202.175 kb on + strand, within Xcc-8004.1263.1 at 1202.175 kb on + strand, within Xcc-8004.1263.1 at 1202.176 kb on - strand, within Xcc-8004.1263.1 at 1202.176 kb on - strand, within Xcc-8004.1263.1 at 1202.280 kb on + strand, within Xcc-8004.1263.1 at 1202.454 kb on + strand, within Xcc-8004.1263.1 at 1202.454 kb on + strand, within Xcc-8004.1263.1 at 1202.454 kb on + strand, within Xcc-8004.1263.1 at 1202.455 kb on - strand, within Xcc-8004.1263.1 at 1202.482 kb on - strand, within Xcc-8004.1263.1 at 1202.558 kb on - strand, within Xcc-8004.1263.1 at 1202.879 kb on + strand at 1202.879 kb on + strand at 1202.879 kb on + strand at 1202.879 kb on + strand at 1202.879 kb on + strand at 1202.880 kb on - strand at 1202.880 kb on - strand at 1202.880 kb on - strand at 1202.883 kb on + strand at 1202.883 kb on + strand at 1202.883 kb on + strand at 1202.883 kb on + strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1202.884 kb on - strand at 1203.342 kb on + strand, within Xcc-8004.1264.1 at 1203.344 kb on + strand, within Xcc-8004.1264.1 at 1203.549 kb on + strand, within Xcc-8004.1264.1 at 1203.631 kb on + strand, within Xcc-8004.1264.1 at 1203.631 kb on + strand, within Xcc-8004.1264.1 at 1203.631 kb on + strand, within Xcc-8004.1264.1 at 1203.631 kb on + strand, within Xcc-8004.1264.1 at 1203.919 kb on + strand at 1204.066 kb on - strand, within Xcc-8004.1265.1 at 1204.066 kb on - strand, within Xcc-8004.1265.1 at 1204.156 kb on + strand, within Xcc-8004.1265.1 at 1204.156 kb on + strand, within Xcc-8004.1265.1 at 1204.156 kb on + strand, within Xcc-8004.1265.1 at 1204.157 kb on - strand, within Xcc-8004.1265.1 at 1204.183 kb on + strand, within Xcc-8004.1265.1 at 1204.184 kb on - strand, within Xcc-8004.1265.1 at 1204.184 kb on - strand, within Xcc-8004.1265.1 at 1204.228 kb on + strand, within Xcc-8004.1265.1 at 1204.229 kb on - strand, within Xcc-8004.1265.1 at 1204.231 kb on + strand, within Xcc-8004.1265.1 at 1204.232 kb on - strand, within Xcc-8004.1265.1 at 1204.232 kb on - strand, within Xcc-8004.1265.1 at 1204.232 kb on - strand, within Xcc-8004.1265.1 at 1204.232 kb on - strand, within Xcc-8004.1265.1 at 1204.232 kb on - strand, within Xcc-8004.1265.1 at 1204.262 kb on - strand, within Xcc-8004.1265.1 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.537 kb on + strand, within Xcc-8004.1265.1 at 1204.687 kb on + strand, within Xcc-8004.1265.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,202,172 + Xcc-8004.1263.1 0.64 -0.6 1,202,175 + Xcc-8004.1263.1 0.64 +1.5 1,202,175 + Xcc-8004.1263.1 0.64 -0.5 1,202,176 - Xcc-8004.1263.1 0.64 +1.6 1,202,176 - Xcc-8004.1263.1 0.64 +0.5 1,202,280 + Xcc-8004.1263.1 0.68 +0.7 1,202,454 + Xcc-8004.1263.1 0.74 -0.1 1,202,454 + Xcc-8004.1263.1 0.74 +0.4 1,202,454 + Xcc-8004.1263.1 0.74 -0.3 1,202,455 - Xcc-8004.1263.1 0.74 -1.7 1,202,482 - Xcc-8004.1263.1 0.75 -1.5 1,202,558 - Xcc-8004.1263.1 0.78 -0.5 1,202,879 + +0.4 1,202,879 + +0.3 1,202,879 + +0.7 1,202,879 + +0.8 1,202,879 + -0.3 1,202,880 - -1.3 1,202,880 - -1.5 1,202,880 - +0.3 1,202,883 + +0.1 1,202,883 + -0.2 1,202,883 + -0.3 1,202,883 + +0.7 1,202,884 - +0.1 1,202,884 - +1.2 1,202,884 - +0.1 1,202,884 - -0.2 1,202,884 - -0.4 1,202,884 - -0.8 1,202,884 - +1.2 1,203,342 + Xcc-8004.1264.1 0.31 +0.7 1,203,344 + Xcc-8004.1264.1 0.31 +0.2 1,203,549 + Xcc-8004.1264.1 0.67 -1.3 1,203,631 + Xcc-8004.1264.1 0.81 -0.8 1,203,631 + Xcc-8004.1264.1 0.81 +0.7 1,203,631 + Xcc-8004.1264.1 0.81 -0.9 1,203,631 + Xcc-8004.1264.1 0.81 -0.9 1,203,919 + -1.3 1,204,066 - Xcc-8004.1265.1 0.15 +0.0 1,204,066 - Xcc-8004.1265.1 0.15 -0.9 1,204,156 + Xcc-8004.1265.1 0.21 +1.0 1,204,156 + Xcc-8004.1265.1 0.21 +1.9 1,204,156 + Xcc-8004.1265.1 0.21 +0.7 1,204,157 - Xcc-8004.1265.1 0.21 -0.3 1,204,183 + Xcc-8004.1265.1 0.23 -0.7 1,204,184 - Xcc-8004.1265.1 0.23 -0.3 1,204,184 - Xcc-8004.1265.1 0.23 -0.6 1,204,228 + Xcc-8004.1265.1 0.26 +0.2 1,204,229 - Xcc-8004.1265.1 0.26 +0.5 1,204,231 + Xcc-8004.1265.1 0.26 -0.1 1,204,232 - Xcc-8004.1265.1 0.26 +0.3 1,204,232 - Xcc-8004.1265.1 0.26 +0.6 1,204,232 - Xcc-8004.1265.1 0.26 -1.5 1,204,232 - Xcc-8004.1265.1 0.26 -0.5 1,204,232 - Xcc-8004.1265.1 0.26 +2.0 1,204,262 - Xcc-8004.1265.1 0.28 -0.4 1,204,537 + Xcc-8004.1265.1 0.47 +0.4 1,204,537 + Xcc-8004.1265.1 0.47 +1.2 1,204,537 + Xcc-8004.1265.1 0.47 +0.7 1,204,687 + Xcc-8004.1265.1 0.57 +0.6
Or see this region's nucleotide sequence