Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1042.1 and Xcc-8004.1044.1 are separated by 20 nucleotides Xcc-8004.1044.1 and Xcc-8004.1045.1 are separated by 128 nucleotides Xcc-8004.1045.1 and Xcc-8004.1047.1 are separated by 104 nucleotides
Xcc-8004.1042.1: Xcc-8004.1042.1 - Type I secretion outer membrane protein, TolC precursor, at 995,033 to 996,406
Xcc-8004.1042.1
Xcc-8004.1044.1: Xcc-8004.1044.1 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 996,427 to 997,083
Xcc-8004.1044.1
Xcc-8004.1045.1: Xcc-8004.1045.1 - hypothetical protein, at 997,212 to 997,865
Xcc-8004.1045.1
Xcc-8004.1047.1: Xcc-8004.1047.1 - GGDEF family protein, at 997,970 to 1,001,071
Xcc-8004.1047.1
Position (kb) 997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.118 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.146 kb on + strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.147 kb on - strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.225 kb on + strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.226 kb on - strand at 997.318 kb on + strand, within Xcc-8004.1045.1 at 997.319 kb on - strand, within Xcc-8004.1045.1 at 997.319 kb on - strand, within Xcc-8004.1045.1 at 997.319 kb on - strand, within Xcc-8004.1045.1 at 997.684 kb on + strand, within Xcc-8004.1045.1 at 997.685 kb on - strand, within Xcc-8004.1045.1 at 997.685 kb on - strand, within Xcc-8004.1045.1 at 997.876 kb on + strand at 997.877 kb on - strand at 997.877 kb on - strand at 997.891 kb on + strand at 997.891 kb on + strand at 997.891 kb on + strand at 997.893 kb on + strand at 997.893 kb on + strand at 997.894 kb on - strand at 997.894 kb on - strand at 997.894 kb on - strand at 997.897 kb on + strand at 997.897 kb on + strand at 997.897 kb on + strand at 997.897 kb on + strand at 997.897 kb on + strand at 997.897 kb on + strand at 997.898 kb on - strand at 997.898 kb on - strand at 997.899 kb on + strand at 997.899 kb on + strand at 997.900 kb on - strand at 997.923 kb on - strand at 997.984 kb on + strand at 997.985 kb on - strand at 998.010 kb on + strand at 998.010 kb on + strand at 998.010 kb on + strand at 998.158 kb on - strand at 998.219 kb on + strand at 998.220 kb on - strand at 998.220 kb on - strand at 998.385 kb on + strand, within Xcc-8004.1047.1 at 998.386 kb on - strand, within Xcc-8004.1047.1 at 998.386 kb on - strand, within Xcc-8004.1047.1 at 998.412 kb on + strand, within Xcc-8004.1047.1 at 998.412 kb on + strand, within Xcc-8004.1047.1 at 998.413 kb on - strand, within Xcc-8004.1047.1 at 998.413 kb on - strand, within Xcc-8004.1047.1 at 998.459 kb on + strand, within Xcc-8004.1047.1 at 998.459 kb on + strand, within Xcc-8004.1047.1 at 998.459 kb on + strand, within Xcc-8004.1047.1 at 998.460 kb on - strand, within Xcc-8004.1047.1 at 998.460 kb on - strand, within Xcc-8004.1047.1 at 998.532 kb on + strand, within Xcc-8004.1047.1 at 998.580 kb on - strand, within Xcc-8004.1047.1 at 998.705 kb on + strand, within Xcc-8004.1047.1 at 998.705 kb on + strand, within Xcc-8004.1047.1 at 998.705 kb on + strand, within Xcc-8004.1047.1 at 998.705 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.808 kb on + strand, within Xcc-8004.1047.1 at 998.809 kb on - strand, within Xcc-8004.1047.1 at 998.809 kb on - strand, within Xcc-8004.1047.1 at 998.809 kb on - strand, within Xcc-8004.1047.1 at 998.809 kb on - strand, within Xcc-8004.1047.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 997,118 + +0.7 997,146 + -0.7 997,146 + -1.5 997,146 + -0.1 997,146 + +0.6 997,146 + +1.1 997,146 + +1.6 997,146 + +1.2 997,146 + +0.2 997,146 + +0.0 997,146 + -0.3 997,146 + -0.9 997,146 + -0.9 997,147 - +1.7 997,147 - +0.0 997,147 - -0.6 997,147 - +0.1 997,147 - -0.8 997,147 - -0.3 997,147 - -0.2 997,147 - +0.4 997,147 - -0.8 997,147 - +0.8 997,147 - -0.4 997,147 - +0.1 997,147 - +0.7 997,147 - -1.1 997,225 + -0.0 997,225 + -0.7 997,225 + +1.1 997,225 + -0.1 997,225 + +0.7 997,225 + -2.3 997,225 + +1.7 997,225 + +0.2 997,225 + -0.1 997,225 + -1.0 997,225 + -0.6 997,225 + +0.7 997,225 + -0.5 997,226 - +0.6 997,226 - +0.6 997,226 - +0.3 997,226 - -1.0 997,226 - +0.7 997,226 - -0.3 997,226 - +0.7 997,226 - -0.9 997,226 - +1.0 997,226 - -2.5 997,226 - +0.6 997,226 - +0.4 997,226 - +1.1 997,226 - +0.1 997,318 + Xcc-8004.1045.1 0.16 -0.5 997,319 - Xcc-8004.1045.1 0.16 -0.5 997,319 - Xcc-8004.1045.1 0.16 -0.5 997,319 - Xcc-8004.1045.1 0.16 +0.6 997,684 + Xcc-8004.1045.1 0.72 -0.6 997,685 - Xcc-8004.1045.1 0.72 -1.6 997,685 - Xcc-8004.1045.1 0.72 -2.9 997,876 + +0.4 997,877 - +1.1 997,877 - +1.2 997,891 + +1.0 997,891 + -0.9 997,891 + +0.3 997,893 + -0.0 997,893 + +0.1 997,894 - +0.7 997,894 - -1.5 997,894 - +0.0 997,897 + -0.6 997,897 + -0.1 997,897 + -0.9 997,897 + -0.6 997,897 + +2.4 997,897 + +0.7 997,898 - +0.3 997,898 - -0.1 997,899 + +1.7 997,899 + -1.3 997,900 - -0.1 997,923 - +0.2 997,984 + -0.3 997,985 - +0.1 998,010 + +0.7 998,010 + -0.6 998,010 + -1.6 998,158 - +0.7 998,219 + -0.4 998,220 - -0.3 998,220 - +0.1 998,385 + Xcc-8004.1047.1 0.13 +2.6 998,386 - Xcc-8004.1047.1 0.13 +0.7 998,386 - Xcc-8004.1047.1 0.13 +0.2 998,412 + Xcc-8004.1047.1 0.14 +0.5 998,412 + Xcc-8004.1047.1 0.14 +0.3 998,413 - Xcc-8004.1047.1 0.14 -0.6 998,413 - Xcc-8004.1047.1 0.14 +0.9 998,459 + Xcc-8004.1047.1 0.16 -0.5 998,459 + Xcc-8004.1047.1 0.16 +0.2 998,459 + Xcc-8004.1047.1 0.16 -1.3 998,460 - Xcc-8004.1047.1 0.16 -1.3 998,460 - Xcc-8004.1047.1 0.16 +0.7 998,532 + Xcc-8004.1047.1 0.18 -0.1 998,580 - Xcc-8004.1047.1 0.20 +1.2 998,705 + Xcc-8004.1047.1 0.24 -0.4 998,705 + Xcc-8004.1047.1 0.24 -0.6 998,705 + Xcc-8004.1047.1 0.24 -2.3 998,705 + Xcc-8004.1047.1 0.24 -0.1 998,808 + Xcc-8004.1047.1 0.27 -0.5 998,808 + Xcc-8004.1047.1 0.27 -0.9 998,808 + Xcc-8004.1047.1 0.27 +1.2 998,808 + Xcc-8004.1047.1 0.27 -0.0 998,808 + Xcc-8004.1047.1 0.27 -0.1 998,808 + Xcc-8004.1047.1 0.27 +0.2 998,808 + Xcc-8004.1047.1 0.27 -0.1 998,809 - Xcc-8004.1047.1 0.27 -0.4 998,809 - Xcc-8004.1047.1 0.27 +1.5 998,809 - Xcc-8004.1047.1 0.27 -0.7 998,809 - Xcc-8004.1047.1 0.27 -1.9
Or see this region's nucleotide sequence