Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2275

Experiment: Aluminum chloride 0.15625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchlD and tRNA-Arg are separated by 585 nucleotidestRNA-Arg and Synpcc7942_2275 overlap by 27 nucleotidesSynpcc7942_2275 and Synpcc7942_2276 overlap by 34 nucleotidesSynpcc7942_2276 and Synpcc7942_2277 are separated by 256 nucleotides Synpcc7942_2274: chlD - protoporphyrin IX magnesium-chelatase, at 2,340,963 to 2,342,996 chlD Synpcc7942_R0011: tRNA-Arg - tRNA-Arg, at 2,343,582 to 2,343,657 tRNA-Arg Synpcc7942_2275: Synpcc7942_2275 - hypothetical protein, at 2,343,631 to 2,343,915 _2275 Synpcc7942_2276: Synpcc7942_2276 - hypothetical protein, at 2,343,882 to 2,344,334 _2276 Synpcc7942_2277: Synpcc7942_2277 - hypothetical protein, at 2,344,591 to 2,344,899 _2277 Position (kb) 2343 2344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2343.019 kb on + strandat 2343.034 kb on + strandat 2343.212 kb on - strandat 2343.221 kb on - strandat 2343.406 kb on - strandat 2343.447 kb on + strandat 2343.447 kb on + strandat 2343.455 kb on - strandat 2343.499 kb on - strandat 2343.505 kb on - strandat 2343.524 kb on - strandat 2343.715 kb on + strand, within Synpcc7942_2275at 2343.718 kb on - strand, within Synpcc7942_2275at 2343.780 kb on - strand, within Synpcc7942_2275at 2343.791 kb on + strand, within Synpcc7942_2275at 2343.866 kb on + strand, within Synpcc7942_2275at 2343.909 kb on + strandat 2343.909 kb on + strandat 2343.917 kb on - strandat 2343.917 kb on - strandat 2343.932 kb on - strand, within Synpcc7942_2276at 2343.952 kb on - strand, within Synpcc7942_2276at 2343.959 kb on - strand, within Synpcc7942_2276at 2343.970 kb on + strand, within Synpcc7942_2276at 2343.970 kb on + strand, within Synpcc7942_2276at 2343.995 kb on + strand, within Synpcc7942_2276at 2344.003 kb on - strand, within Synpcc7942_2276at 2344.005 kb on + strand, within Synpcc7942_2276at 2344.005 kb on + strand, within Synpcc7942_2276at 2344.013 kb on - strand, within Synpcc7942_2276at 2344.028 kb on - strand, within Synpcc7942_2276at 2344.029 kb on - strand, within Synpcc7942_2276at 2344.040 kb on + strand, within Synpcc7942_2276at 2344.053 kb on + strand, within Synpcc7942_2276at 2344.082 kb on - strand, within Synpcc7942_2276at 2344.132 kb on + strand, within Synpcc7942_2276at 2344.140 kb on - strand, within Synpcc7942_2276at 2344.140 kb on - strandat 2344.142 kb on + strand, within Synpcc7942_2276at 2344.176 kb on - strand, within Synpcc7942_2276at 2344.247 kb on + strand, within Synpcc7942_2276at 2344.249 kb on + strand, within Synpcc7942_2276at 2344.376 kb on + strandat 2344.403 kb on - strandat 2344.404 kb on - strandat 2344.426 kb on + strandat 2344.451 kb on - strandat 2344.485 kb on - strandat 2344.486 kb on - strandat 2344.499 kb on + strandat 2344.587 kb on + strandat 2344.604 kb on + strandat 2344.619 kb on + strandat 2344.638 kb on + strand, within Synpcc7942_2277at 2344.698 kb on - strand, within Synpcc7942_2277at 2344.746 kb on - strand, within Synpcc7942_2277at 2344.763 kb on + strand, within Synpcc7942_2277at 2344.777 kb on + strand, within Synpcc7942_2277at 2344.784 kb on - strand, within Synpcc7942_2277at 2344.790 kb on - strand, within Synpcc7942_2277at 2344.849 kb on - strand, within Synpcc7942_2277at 2344.858 kb on + strand, within Synpcc7942_2277at 2344.858 kb on + strand, within Synpcc7942_2277at 2344.858 kb on + strand, within Synpcc7942_2277at 2344.866 kb on - strand, within Synpcc7942_2277at 2344.888 kb on - strandat 2344.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.15625 mM
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2,343,019 + +1.3
2,343,034 + -0.3
2,343,212 - -1.7
2,343,221 - +0.5
2,343,406 - +0.4
2,343,447 + +0.2
2,343,447 + -2.4
2,343,455 - +0.8
2,343,499 - -1.4
2,343,505 - -2.3
2,343,524 - -0.1
2,343,715 + Synpcc7942_2275 0.29 -2.2
2,343,718 - Synpcc7942_2275 0.31 -1.3
2,343,780 - Synpcc7942_2275 0.52 -0.1
2,343,791 + Synpcc7942_2275 0.56 -1.1
2,343,866 + Synpcc7942_2275 0.82 -0.1
2,343,909 + -0.3
2,343,909 + -0.8
2,343,917 - -1.5
2,343,917 - -0.1
2,343,932 - Synpcc7942_2276 0.11 -0.1
2,343,952 - Synpcc7942_2276 0.15 +0.1
2,343,959 - Synpcc7942_2276 0.17 +1.2
2,343,970 + Synpcc7942_2276 0.19 -0.3
2,343,970 + Synpcc7942_2276 0.19 -1.4
2,343,995 + Synpcc7942_2276 0.25 -0.2
2,344,003 - Synpcc7942_2276 0.27 +1.9
2,344,005 + Synpcc7942_2276 0.27 -0.6
2,344,005 + Synpcc7942_2276 0.27 -3.4
2,344,013 - Synpcc7942_2276 0.29 -2.1
2,344,028 - Synpcc7942_2276 0.32 -0.2
2,344,029 - Synpcc7942_2276 0.32 +1.6
2,344,040 + Synpcc7942_2276 0.35 -2.7
2,344,053 + Synpcc7942_2276 0.38 -1.1
2,344,082 - Synpcc7942_2276 0.44 -2.4
2,344,132 + Synpcc7942_2276 0.55 -0.3
2,344,140 - Synpcc7942_2276 0.57 -0.7
2,344,140 - -1.7
2,344,142 + Synpcc7942_2276 0.57 +1.6
2,344,176 - Synpcc7942_2276 0.65 +0.7
2,344,247 + Synpcc7942_2276 0.81 -0.7
2,344,249 + Synpcc7942_2276 0.81 -0.6
2,344,376 + +2.3
2,344,403 - -0.8
2,344,404 - +0.2
2,344,426 + +0.1
2,344,451 - +2.8
2,344,485 - +1.5
2,344,486 - -0.1
2,344,499 + +0.9
2,344,587 + +0.8
2,344,604 + +0.2
2,344,619 + +0.2
2,344,638 + Synpcc7942_2277 0.15 -0.5
2,344,698 - Synpcc7942_2277 0.35 +1.5
2,344,746 - Synpcc7942_2277 0.50 +0.4
2,344,763 + Synpcc7942_2277 0.56 -0.2
2,344,777 + Synpcc7942_2277 0.60 -0.1
2,344,784 - Synpcc7942_2277 0.62 -2.4
2,344,790 - Synpcc7942_2277 0.64 +1.8
2,344,849 - Synpcc7942_2277 0.83 +0.6
2,344,858 + Synpcc7942_2277 0.86 +0.1
2,344,858 + Synpcc7942_2277 0.86 +0.9
2,344,858 + Synpcc7942_2277 0.86 +0.7
2,344,866 - Synpcc7942_2277 0.89 -0.7
2,344,888 - -0.5
2,344,913 - +0.8

Or see this region's nucleotide sequence