Experiment: Aluminum chloride 0.15625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnd and tRNA-Val are separated by 38 nucleotides tRNA-Val and rbp1 are separated by 272 nucleotides rbp1 and Synpcc7942_0680 are separated by 225 nucleotides Synpcc7942_0680 and ispD are separated by 14 nucleotides ispD and Synpcc7942_0682 are separated by 83 nucleotides
Synpcc7942_0678: rnd - 3'-5' exonuclease, at 672,767 to 673,402
rnd
Synpcc7942_R0038: tRNA-Val - tRNA-Val, at 673,441 to 673,512
tRNA-Val
Synpcc7942_0679: rbp1 - RNA-binding region RNP-1, at 673,785 to 674,108
rbp1
Synpcc7942_0680: Synpcc7942_0680 - C-5 sterol desaturase, at 674,334 to 675,149
_0680
Synpcc7942_0681: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 675,164 to 675,862
ispD
Synpcc7942_0682: Synpcc7942_0682 - hypothetical protein, at 675,946 to 676,905
_0682
Position (kb)
674
675
676 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 673.361 kb on - strand at 673.378 kb on + strand at 673.394 kb on - strand at 673.396 kb on + strand at 673.399 kb on + strand at 673.410 kb on - strand at 673.443 kb on - strand at 673.581 kb on + strand at 673.633 kb on - strand at 673.651 kb on + strand at 673.811 kb on - strand at 673.861 kb on - strand, within rbp1 at 673.862 kb on + strand, within rbp1 at 673.870 kb on - strand, within rbp1 at 673.875 kb on - strand, within rbp1 at 673.952 kb on - strand, within rbp1 at 673.975 kb on + strand, within rbp1 at 673.978 kb on - strand, within rbp1 at 674.020 kb on + strand, within rbp1 at 674.041 kb on - strand, within rbp1 at 674.116 kb on + strand at 674.124 kb on - strand at 674.125 kb on - strand at 674.184 kb on + strand at 674.535 kb on + strand, within Synpcc7942_0680 at 674.537 kb on - strand, within Synpcc7942_0680 at 674.610 kb on - strand, within Synpcc7942_0680 at 674.771 kb on - strand, within Synpcc7942_0680 at 674.792 kb on - strand, within Synpcc7942_0680 at 674.801 kb on + strand, within Synpcc7942_0680 at 674.886 kb on - strand, within Synpcc7942_0680 at 674.886 kb on - strand, within Synpcc7942_0680 at 674.922 kb on - strand, within Synpcc7942_0680 at 674.923 kb on + strand, within Synpcc7942_0680 at 674.924 kb on - strand, within Synpcc7942_0680 at 674.959 kb on - strand, within Synpcc7942_0680 at 674.960 kb on - strand, within Synpcc7942_0680 at 674.975 kb on + strand, within Synpcc7942_0680 at 675.004 kb on - strand, within Synpcc7942_0680 at 675.119 kb on + strand at 675.152 kb on - strand at 675.164 kb on - strand at 675.191 kb on - strand at 675.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 0.15625 mM remove 673,361 - -0.4 673,378 + -2.1 673,394 - +0.3 673,396 + +0.7 673,399 + +0.2 673,410 - -1.1 673,443 - +1.5 673,581 + +1.2 673,633 - -1.8 673,651 + -1.3 673,811 - -0.1 673,861 - rbp1 Synpcc7942_0679 0.23 +0.6 673,862 + rbp1 Synpcc7942_0679 0.24 -0.1 673,870 - rbp1 Synpcc7942_0679 0.26 -1.7 673,875 - rbp1 Synpcc7942_0679 0.28 -0.1 673,952 - rbp1 Synpcc7942_0679 0.52 -1.7 673,975 + rbp1 Synpcc7942_0679 0.59 -0.9 673,978 - rbp1 Synpcc7942_0679 0.60 -2.5 674,020 + rbp1 Synpcc7942_0679 0.73 -0.4 674,041 - rbp1 Synpcc7942_0679 0.79 -2.0 674,116 + -2.1 674,124 - +2.7 674,125 - +0.9 674,184 + -0.8 674,535 + Synpcc7942_0680 0.25 -1.7 674,537 - Synpcc7942_0680 0.25 -0.1 674,610 - Synpcc7942_0680 0.34 +0.5 674,771 - Synpcc7942_0680 0.54 -1.9 674,792 - Synpcc7942_0680 0.56 -0.9 674,801 + Synpcc7942_0680 0.57 -1.8 674,886 - Synpcc7942_0680 0.68 -0.7 674,886 - Synpcc7942_0680 0.68 -1.7 674,922 - Synpcc7942_0680 0.72 -1.7 674,923 + Synpcc7942_0680 0.72 -1.9 674,924 - Synpcc7942_0680 0.72 -1.5 674,959 - Synpcc7942_0680 0.77 -0.1 674,960 - Synpcc7942_0680 0.77 -2.6 674,975 + Synpcc7942_0680 0.79 -0.1 675,004 - Synpcc7942_0680 0.82 -0.1 675,119 + +1.5 675,152 - +3.2 675,164 - +0.5 675,191 - -0.7 675,948 - +1.0
Or see this region's nucleotide sequence